mRNA_H-elongata_contig62772.13856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62772.13856.1
Unique NamemRNA_H-elongata_contig62772.13856.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A6H5J742_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J742_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 2.140e-108
Identity = 178/189 (94.18%), Postives = 183/189 (96.83%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSVTNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDINA+LVEDQGFLQILRDLICDPNPTVV ANAVAALSEIGDTSG+DVMEI+TSVLQKLLAALNECTEWGQVFILDSLAKYTP DGREAEGIIERVTPRLQHANSAVVMSAVKVVL+YLDSV + DT RSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKR GILESEIKV
Sbjct:   94 DPYVRKTAAVCVAKLYDINADLVEDQGFLQILRDLICDPNPTVV-ANAVAALSEIGDTSGRDVMEIDTSVLQKLLAALNECTEWGQVFILDSLAKYTPADGREAEGIIERVTPRLQHANSAVVMSAVKVVLTYLDSVNSVDTSRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRPGILESEIKV 281
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A836CH70_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH70_9STRA)

HSP 1 Score: 315 bits (808), Expect = 3.710e-99
Identity = 166/189 (87.83%), Postives = 173/189 (91.53%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSVTNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDINA LVEDQGFLQ+LRDL+CDPNPTVV ANAVAALSEI DT G+DVM+I T+ LQKLLAALNECTEWGQVFILDSLAKY PVDG EAEGIIERVTPRLQHANSAVVMSAVKV+LSYLD +TN DT R FSRKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE EIKV
Sbjct:  144 DPYVRKTAAVCVAKLYDINAGLVEDQGFLQVLRDLVCDPNPTVV-ANAVAALSEITDTGGKDVMQITTATLQKLLAALNECTEWGQVFILDSLAKYDPVDGVEAEGIIERVTPRLQHANSAVVMSAVKVILSYLDLITNKDTERVFSRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPKILEHEIKV 331
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A7S2H873_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H873_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.430e-91
Identity = 150/193 (77.72%), Postives = 168/193 (87.05%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLD----SVTNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDI   LV+++GFL++L DLI D NP+VV AN VAALSEI +TSG+DVM+I+ +VLQKLLAALNECTEWGQVFILDSLAKYTP D REAEGIIERVTPRLQHANSAVVMSAVKV+L+Y++    S  N D IR+ +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE EI+V
Sbjct:  146 DPYVRKTAAVCVAKLYDIAPGLVQERGFLEVLHDLISDSNPSVV-ANGVAALSEIAETSGRDVMKISAAVLQKLLAALNECTEWGQVFILDSLAKYTPADAREAEGIIERVTPRLQHANSAVVMSAVKVILAYMEVMGSSGANADAIRNLTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPNILEDEIRV 337
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A7S1VQ66_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQ66_9STRA)

HSP 1 Score: 294 bits (752), Expect = 2.870e-91
Identity = 151/189 (79.89%), Postives = 171/189 (90.48%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSVTNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDI  +LV+++GFL +L DLI D NP+VV AN VAALSEI +TSG+DVM+I+  VLQKLLAALNECTEWGQVFILDSLAKYTP DGREAEGIIERVTPRLQHAN+AVVMSAVKV+L+Y+D++ N+D IR+ +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE+EIKV
Sbjct:  145 DPYVRKTAAVCVAKLYDIAPDLVQERGFLDVLHDLISDSNPSVV-ANGVAALSEISETSGRDVMKISAGVLQKLLAALNECTEWGQVFILDSLAKYTPADGREAEGIIERVTPRLQHANAAVVMSAVKVILNYMDALQNSDAIRNLTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPNILENEIKV 332
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A7S3LFQ5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFQ5_9STRA)

HSP 1 Score: 293 bits (749), Expect = 8.020e-91
Identity = 155/191 (81.15%), Postives = 172/191 (90.05%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSV--TNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDIN ELV ++GFL++L DLI D NP+VV AN VAALSEI +TSG+DVM+I+ SVLQKLLAALNECTEWGQVFILDSLAKYTP DGREAEGIIERVTPRLQHANSAVVMSAVKV+LSY++ +   N+D+IR  +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE+EIKV
Sbjct:  137 DPYVRKTAAVCVAKLYDINPELVVERGFLEVLHDLISDSNPSVV-ANGVAALSEIAETSGKDVMKISASVLQKLLAALNECTEWGQVFILDSLAKYTPADGREAEGIIERVTPRLQHANSAVVMSAVKVILSYMELMGSANSDSIRHLTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPHILENEIKV 326
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A7S3PZD9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZD9_9STRA)

HSP 1 Score: 291 bits (746), Expect = 3.380e-90
Identity = 155/191 (81.15%), Postives = 173/191 (90.58%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSV--TNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDI   LV+++GFL+IL DLI D NP+VV AN VAALSEI +TSG+DVM+I+TSVLQKLLAALNECTEWGQVFILDSLAKYTP D REAEGIIERVTPRLQHANSAVVMSAVKV+LSY++ +  +N+DTIR+ +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE+EIKV
Sbjct:  147 DPYVRKTAAVCVAKLYDIAPALVQERGFLEILHDLISDSNPSVV-ANGVAALSEIAETSGKDVMKISTSVLQKLLAALNECTEWGQVFILDSLAKYTPADAREAEGIIERVTPRLQHANSAVVMSAVKVILSYMELMGNSNSDTIRNLTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPTILENEIKV 336
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A1Z5K9X8_FISSO (AP-1 complex subunit beta-1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9X8_FISSO)

HSP 1 Score: 289 bits (740), Expect = 1.240e-89
Identity = 153/191 (80.10%), Postives = 170/191 (89.01%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSV--TNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDI  +LVE++GF++IL DLI D NP+VV AN VAALSEI ++SG+DVM I  SVLQKLLAALNECTEWGQVFILDSLAKYTP DGREAEGIIERVTPRLQHANSAVVMSAVKV+LSY++ +   N+D IR+ +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE+EIKV
Sbjct:  120 DPYVRKTAAVCVAKLYDIAPDLVEERGFIEILHDLISDSNPSVV-ANGVAALSEIAESSGKDVMRITASVLQKLLAALNECTEWGQVFILDSLAKYTPADGREAEGIIERVTPRLQHANSAVVMSAVKVILSYMELMGSQNSDAIRALTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPNILENEIKV 309
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A7S1FVF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVF1_9STRA)

HSP 1 Score: 288 bits (737), Expect = 3.640e-89
Identity = 150/189 (79.37%), Postives = 169/189 (89.42%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSVTNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYD+   LVE++GFL+ L DLI D NP+VV AN+VAALSE+ +TSG+DVM +++SVLQKLLAALNECTEWGQVFILDSLAKY P DG+EAEGIIERVTPRLQHANSAVVMSAVKV+LSY++ V N DTIR+ +RKLAPPLVTLLNSE E QYVALRNINLIVQKR  ILE+EIKV
Sbjct:  132 DPYVRKTAAVCVAKLYDVAPNLVEERGFLETLHDLISDSNPSVV-ANSVAALSEVAETSGRDVMRVSSSVLQKLLAALNECTEWGQVFILDSLAKYAPRDGQEAEGIIERVTPRLQHANSAVVMSAVKVILSYMELVANQDTIRNLTRKLAPPLVTLLNSEAEIQYVALRNINLIVQKRPHILENEIKV 319
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: A0A6U3VDL9_9STRA (AP complex subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VDL9_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.000e-88
Identity = 149/191 (78.01%), Postives = 168/191 (87.96%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSV--TNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDI   LV+++GFL++L DLI D NP+VV AN VAALSEI +TSG+DVM+I+ +VLQKLLAALNECTEWGQVFILDSLAKYTP D REAEGIIERVTPRLQHANSAVVMSAVKV+L+Y++ +   N D IR+ +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR  ILE EI+V
Sbjct:  145 DPYVRKTAAVCVAKLYDIAPGLVQERGFLEVLHDLISDSNPSVV-ANGVAALSEIAETSGRDVMKISAAVLQKLLAALNECTEWGQVFILDSLAKYTPADAREAEGIIERVTPRLQHANSAVVMSAVKVILAYMEVMGGANADAIRNLTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRPNILEDEIRV 334
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BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Match: B8C7W7_THAPS (Beta subunit of tetrameric clathrin adaptor complex AP1 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C7W7_THAPS)

HSP 1 Score: 287 bits (734), Expect = 2.170e-88
Identity = 152/194 (78.35%), Postives = 171/194 (88.14%), Query Frame = 1 
Query:    1 DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVAALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVDGREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSV-----TNTDTIRSFSRKLAPPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKV 567
            DPYVRKTAAVCVAKLYDI  ELV+++GF++ L DLI D NP+VV AN VAALSEI +TSG+DVM+I+ SVLQKLLAALNECTEWGQVFILDSLAKYTP D REAEGIIERVTPRLQHANSAVVMSAVKV+LSY+D +      + D+IR+ +RKLAPPLVTLLNSEPE QYVALRNINLIVQKR+ ILE+EIKV
Sbjct:  144 DPYVRKTAAVCVAKLYDIAPELVQERGFIETLHDLISDSNPSVV-ANGVAALSEISETSGRDVMKISASVLQKLLAALNECTEWGQVFILDSLAKYTPADAREAEGIIERVTPRLQHANSAVVMSAVKVILSYMDVMGGSGGAHADSIRALTRKLAPPLVTLLNSEPEIQYVALRNINLIVQKRSNILENEIKV 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62772.13856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J742_9PHAE2.140e-10894.18B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A836CH70_9STRA3.710e-9987.83Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A7S2H873_9STRA1.430e-9177.72Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S1VQ66_9STRA2.870e-9179.89Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S3LFQ5_9STRA8.020e-9181.15Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3PZD9_9STRA3.380e-9081.15Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K9X8_FISSO1.240e-8980.10AP-1 complex subunit beta-1 n=2 Tax=Fistulifera so... [more]
A0A7S1FVF1_9STRA3.640e-8979.37Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6U3VDL9_9STRA1.000e-8878.01AP complex subunit beta n=1 Tax=Ditylum brightwell... [more]
B8C7W7_THAPS2.170e-8878.35Beta subunit of tetrameric clathrin adaptor comple... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62772contigH-elongata_contig62772:249..2998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue3.9e-91
Seed eggNOG ortholog2880.D8LDW2
KEGG koko:K11825,ko:K12392
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,map04142,map04144,map04721,map04961,map05016
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005886,GO:0005905,GO:0005911,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0008150,GO:0009267,GO:0009506,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0012505,GO:0012506,GO:0012510,GO:0016020,GO:0016043,GO:0016050,GO:0022402,GO:0030054,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030587,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031152,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032502,GO:0032991,GO:0033298,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045334,GO:0048475,GO:0048856,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0055044,GO:0061640,GO:0071496,GO:0071840,GO:0071944,GO:0090702,GO:0097708,GO:0098588,GO:0098630,GO:0098743,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1903047
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size576
Cds size576
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62772.13856.1prot_H-elongata_contig62772.13856.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62772 249..2998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.3033547-CDS-H-elongata_contig62772:248..3771622931011.3033547-CDS-H-elongata_contig62772:248..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 249..377 +
1691679661.4728944-CDS-H-elongata_contig62772:248..3771691679661.4728944-CDS-H-elongata_contig62772:248..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 249..377 +
1622931011.3171787-CDS-H-elongata_contig62772:570..6991622931011.3171787-CDS-H-elongata_contig62772:570..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 571..699 +
1691679661.4863145-CDS-H-elongata_contig62772:570..6991691679661.4863145-CDS-H-elongata_contig62772:570..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 571..699 +
1622931011.3329773-CDS-H-elongata_contig62772:1292..14181622931011.3329773-CDS-H-elongata_contig62772:1292..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 1293..1418 +
1691679661.5038443-CDS-H-elongata_contig62772:1292..14181691679661.5038443-CDS-H-elongata_contig62772:1292..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 1293..1418 +
1622931011.3539884-CDS-H-elongata_contig62772:2806..29981622931011.3539884-CDS-H-elongata_contig62772:2806..2998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 2807..2998 +
1691679661.5126617-CDS-H-elongata_contig62772:2806..29981691679661.5126617-CDS-H-elongata_contig62772:2806..2998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62772 2807..2998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62772.13856.1

>prot_H-elongata_contig62772.13856.1 ID=prot_H-elongata_contig62772.13856.1|Name=mRNA_H-elongata_contig62772.13856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
DPYVRKTAAVCVAKLYDINAELVEDQGFLQILRDLICDPNPTVVVANAVA
ALSEIGDTSGQDVMEINTSVLQKLLAALNECTEWGQVFILDSLAKYTPVD
GREAEGIIERVTPRLQHANSAVVMSAVKVVLSYLDSVTNTDTIRSFSRKL
APPLVTLLNSEPETQYVALRNINLIVQKRAGILESEIKVCA*
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mRNA from alignment at H-elongata_contig62772:249..2998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62772.13856.1 ID=mRNA_H-elongata_contig62772.13856.1|Name=mRNA_H-elongata_contig62772.13856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2750bp|location=Sequence derived from alignment at H-elongata_contig62772:249..2998+ (Himanthalia elongata Himel1 dioecious)
GATCCTTATGTTCGCAAGACGGCGGCCGTGTGCGTAGCGAAGCTCTACGA
CATCAATGCGGAGCTCGTGGAGGACCAGGGTTTCCTGCAGATATTGAGGG
ACCTGATCTGCGACCCAAACCCCACGGTAGTGCCCTGTTTTGTTGGACGA
GAGGGACCGGGGAGGCGGGGGGGAGGGGGAACGAGGACTTTCTTTGGCAA
TTTTCGCTCTAGTTCTTCAAATATGCAATCCACGCCCTCTTTACAAAATC
AATCGTGATGGAAATCTGGGAGATCTCGCGTGATATTGAAATCGATTTGC
TTCGTTTTTCGGCTTTTTGAAGGTGGTGGCTAACGCAGTGGCGGCGCTGT
CGGAGATCGGAGACACCTCCGGGCAGGACGTGATGGAAATCAACACCTCC
GTGCTGCAGAAGCTTCTAGCCGCGCTCAACGAGTGCACCGAGTGGGGCCA
GGTGACCATCCCGCAGCGAAAACCGGAGAGATGGACTATGACAGAGAGAG
AAAGGCAGACAGATAGAGAGATACATCAGTTATCATAACCCAACGCTTTT
ATTCATGAGCAAACGAGAGAGAAAGGGGCAGAGTCGCGTTCGACTTGAAT
CGAAGCCATGTGAAATGTACACCCTCTATTTTCCAGCTGTTGATGTTAGG
CGGAGCGAGTAGGAGGTAGGTGGGGAGGGGGGGGGGCGGGGGGAGCGGTC
GATCCATACGTACTTTCTACGATATGTGTCCGTTTTTATATCTTCCCCGA
CTCTCTTGAGTCTGCGGTGTTGTGCCGGTACGATATACGGCGTGTTCCGT
TTTATTTCTCTTTTTGTTCTTTGTTTTTTTTATGTGTTTCTCCCTATGGC
GCCACTCATCGTAATAGGTAACCTCTTTAAACGTTACCCATGCATCCCGT
CGTGAGCATGTGGCCCTAGAGGAGGGTACCTACCTACTCATATATCATCA
CACAGACTCCTCGGTTCACGCTTACTGTACGCCTTTTTTTCACTGTCGCG
CTTCTGTTTCTGTATGGTACGATATCGTATGGTATGGGACACAGGTATTC
ATCTTGGACTCGCTGGCCAAGTACACACCAGTGGACGGCCGGGAGGCGGA
AGGTATCATCGAGCGGGTCACGCCGCGCTTGCAGCACGCCAACTCGGCGG
TCGTGATGTCCGCCGTAAAGGTGTGTGTGTGTGTTGGTGTTGGTGTTGGT
GTTGGTGTGTGTGGATGGGGGGAGGGGGTAGGGGTGTTGTTTCCATCTGC
TTTATAGCTGTGGCTACAGACTAGCGATCGATCTACTCGCGTAGAGCTCT
CCCGGCAATCAAAACAACGGACGCGCGGTGTACGCGCGCGTAGTTCTGCG
GTTCGTCGGAAATCGTGCGCTTGCTCTCGTCCAGTAAATAAAATTATGAA
AATTACGAAGTAAAAGACACCTGCGATATTCCACAACGCCGCGAACGAAA
CGTACAAACCCCTGACGTTTTACAGGCAAGAAACATATTGTCGAGGGTAG
AGCCTACAATGTTTGCTGCGTAACCCGTCCGAGGTGGGAGCTAAATTCAC
ACACGGCTCGGAACACCTCTCTTTCTCTCCCGCTCTCCCCCCCCTCTCCT
TTTCTAGGTTGTGTGATAGAACAGAGACATCCCACAAAACCATGCTGTAA
TCACCCCGCAGAAAGGAACAAAACTGTCGTGGTACCGGACCGCGCTTTAC
TACGGTCTTACCAGGCTTGATGTGACGTATCCTGGCGGGTTGATATATTT
TTTTGCCACGTTAACTTGGACAAAAAGAAAGTTGCAGGCTTAGCTAGCAC
AGGCTAGTTACAGTATTAGTCGTATGTGTTCGGTTACGGTGCGTACACTG
GAGGGATGAAGGAGGGGAGACTTCGCTCTCCGTGTGTTCTCAGGCTTGCT
CGGAGAGACGCACACTATTTTCCTTCCTCCTCATATGTCTCGCTTGCTCG
CTTTCTCACTCGCAGTCCCAATCCGCCACGCCTGGTAAGAGCTACGGCCC
TACATCCATCTCTCGTGTCTACTCTCTTGACGAATACACTCTGATCCTCT
TTCCCCCTCCGACCGAGACCTCCTACGATTGCACTCCCCGCGTGCGCGTC
TGAAGTCGGGTTATCGTACGAACATCGTAGGAAACGGGGCGCACTGTAAA
TAGTATAATATGCCACACACACAAACACACACACACACACTCTAGTAGTA
ACATTTTTGGTCGGAAGTCACACTACACATTAATATAACACCCTCTGTGG
TATAAGCAAGCACCCCGATGGTGATATACGAGGTAACTCATTGATAGGGC
AAGCTTTCAACCTTAGAAACCCCGGGGTTTTGGCATTTGGCTCCCGCGGG
AGGTTATGATAGGATAAGGATATACACTGAACATTCAGTACTATTTCACT
TACGGTACAGTGTGTTCAAGGAGTGTAGATGTCTGAAGCACCCCCAAAGT
AATAGACACAGTAATATCGCTGCATTGCTGCACGCTCCCCCCTCCCCCTT
CCCCCACCCCCAAAACAACTTGTCACGCCCCCGGTACGTTATGATTTTTG
GTCGCCAGGTAGTGCTGTCGTATTTGGATAGCGTCACCAACACGGACACG
ATCCGGTCGTTCAGCCGCAAGCTGGCCCCTCCCCTCGTGACGCTGCTCAA
CTCCGAGCCGGAGACACAGTACGTGGCGCTGCGCAACATCAATCTTATCG
TCCAGAAGCGCGCGGGCATTCTGGAGTCGGAGATCAAGGTCTGTGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig62772:249..2998+

>mRNA_H-elongata_contig62772.13856.1 ID=mRNA_H-elongata_contig62772.13856.1|Name=mRNA_H-elongata_contig62772.13856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig62772:249..2998+ (Himanthalia elongata Himel1 dioecious)
GATCCTTATGTTCGCAAGACGGCGGCCGTGTGCGTAGCGAAGCTCTACGA
CATCAATGCGGAGCTCGTGGAGGACCAGGGTTTCCTGCAGATATTGAGGG
ACCTGATCTGCGACCCAAACCCCACGGTAGATCCTTATGTTCGCAAGACG
GCGGCCGTGTGCGTAGCGAAGCTCTACGACATCAATGCGGAGCTCGTGGA
GGACCAGGGTTTCCTGCAGATATTGAGGGACCTGATCTGCGACCCAAACC
CCACGGTAGTGGTGGCTAACGCAGTGGCGGCGCTGTCGGAGATCGGAGAC
ACCTCCGGGCAGGACGTGATGGAAATCAACACCTCCGTGCTGCAGAAGCT
TCTAGCCGCGCTCAACGAGTGCACCGAGTGGGGCCAGGTGGTGGCTAACG
CAGTGGCGGCGCTGTCGGAGATCGGAGACACCTCCGGGCAGGACGTGATG
GAAATCAACACCTCCGTGCTGCAGAAGCTTCTAGCCGCGCTCAACGAGTG
CACCGAGTGGGGCCAGGTATTCATCTTGGACTCGCTGGCCAAGTACACAC
CAGTGGACGGCCGGGAGGCGGAAGGTATCATCGAGCGGGTCACGCCGCGC
TTGCAGCACGCCAACTCGGCGGTCGTGATGTCCGCCGTAAAGGTATTCAT
CTTGGACTCGCTGGCCAAGTACACACCAGTGGACGGCCGGGAGGCGGAAG
GTATCATCGAGCGGGTCACGCCGCGCTTGCAGCACGCCAACTCGGCGGTC
GTGATGTCCGCCGTAAAGGTAGTGCTGTCGTATTTGGATAGCGTCACCAA
CACGGACACGATCCGGTCGTTCAGCCGCAAGCTGGCCCCTCCCCTCGTGA
CGCTGCTCAACTCCGAGCCGGAGACACAGTACGTGGCGCTGCGCAACATC
AATCTTATCGTCCAGAAGCGCGCGGGCATTCTGGAGTCGGAGATCAAGGT
CTGTGCATGAGTAGTGCTGTCGTATTTGGATAGCGTCACCAACACGGACA
CGATCCGGTCGTTCAGCCGCAAGCTGGCCCCTCCCCTCGTGACGCTGCTC
AACTCCGAGCCGGAGACACAGTACGTGGCGCTGCGCAACATCAATCTTAT
CGTCCAGAAGCGCGCGGGCATTCTGGAGTCGGAGATCAAGGTCTGTGCAT
GA
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