mRNA_H-elongata_contig62769.13855.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62769.13855.1
Unique NamemRNA_H-elongata_contig62769.13855.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5L7W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W0_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.680e-32
Identity = 66/143 (46.15%), Postives = 86/143 (60.14%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC    + L L++    P+ A  R  SPE+R MI AE+ +L + G I +S S WAA C  V+K DG +R+  D+R LN  L S SGGLGD+  IFD +     F+  DLASGF Q+ I    R  TAFR+ADG LW++ R 
Sbjct:   86 VPACINGELELPLINEFCTPFAAKQRRVSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKYRSKTAFRDADGMLWEFTRA 228
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.900e-32
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC    + L L++    P+ A  R  SPE+R MI AE+ +L + G I +S S WAA C  V+K DG +R+  D+R LN  L S SGGLGD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:  137 VPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRA 279
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.640e-32
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC    + L L++    P+ A  R  SPE+R MI AE+ +L + G I +S S WAA C  V+K DG +R+  D+R LN  L S SGGLGD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:  139 VPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRA 281
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.800e-32
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC    + L L++    P+ A  R  SPE+R MI AE+ +L + G I +S S WAA C  V+K DG +R+  D+R LN  L S SGGLGD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:  661 VPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRA 803
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.070e-32
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC    + L L++    P+ A  R  SPE+R MI AE+ +L + G I +S SAWAA C  V+K DG +R+  D+R LN  L S SGGL D+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:   62 VPACINGELELPLINEFCTPFAAKQRRLSPEERRMIRAEIQQLVDRGVIRQSMSAWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLADMQTIFDGLKGKKYFTQVDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRA 204
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.630e-31
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC    + L L++    P+ A  R  SPE+R MI AE+ +L + G I +  S WAA CS V+K DG +R+  D+R LN  L S SGGLGD+  I D +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:  190 VPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQPMSLWAAQCSCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTILDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRA 332
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5KAQ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.670e-31
Identity = 66/143 (46.15%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            V AC G+ + L L+D    P+ A  R  SPE+R MI AE+ +L + G I  S S WAA C  V+K DG +R+  D+R LN  L + SGGLGD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG L+++ R 
Sbjct:  157 VAACGGSELELPLIDEFCTPHAAKQRRFSPEERRMIRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRA 299
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.420e-30
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1 
Query:   34 MRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            + L L++    P+ A  R  SPE+R MI AE+ +L + G I +S S WAA C  V+K DG +R+  D+R LN  L S SGGLGD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:    5 LELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRA 139
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.240e-30
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            V AC G  + L L+D    P+ A  R  SPE+R MI AE+ +L + G I  S S WAA C  V+K DG +R+  D+R LN  L + SGGLGD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG L+++ R 
Sbjct:  299 VAACGGTELELPLIDEFCTPHAAKQRRFSPEERRMIRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRA 441
[Close]
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Match: A0A6H5L7I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.150e-29
Identity = 64/143 (44.76%), Postives = 84/143 (58.74%), Query Frame = 1 
Query:   10 VPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESGTIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIFDEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC 438
            VPAC      L L++    P+ A  R  +P  R MI AE+ +L + G I +S S WAA C  V+K DG +R+  D+R LN  L S SGG GD+  IFD +     F+  DLASGF Q+ I   DR+ TAFR+ADG LW++ R 
Sbjct:  158 VPACINGEYELPLINEFCTPFAAKQRRFAPAGRRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGWGDMQTIFDGLKGKKYFTQLDLASGFRQMEIAEKDRYKTAFRDADGMLWEFTRA 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62769.13855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W0_9PHAE1.680e-3246.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV6_9PHAE2.900e-3246.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE3.640e-3246.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE3.800e-3246.85RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KGF2_9PHAE9.070e-3246.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J659_9PHAE1.630e-3146.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAQ6_9PHAE8.670e-3146.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIS6_9PHAE3.420e-3046.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF4_9PHAE5.240e-3046.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7I8_9PHAE2.150e-2944.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62769contigH-elongata_contig62769:946..1386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score74.3
Seed ortholog evalue5.2e-11
Seed eggNOG ortholog7029.ACYPI43064-PA
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,3ECJT@33342,3SIRK@50557,41WI3@6656,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.256356-CDS-H-elongata_contig62769:945..13861622931011.256356-CDS-H-elongata_contig62769:945..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62769 946..1386 +
1691679661.4594455-CDS-H-elongata_contig62769:945..13861691679661.4594455-CDS-H-elongata_contig62769:945..1386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62769 946..1386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62769.13855.1prot_H-elongata_contig62769.13855.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62769 946..1386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62769.13855.1

>prot_H-elongata_contig62769.13855.1 ID=prot_H-elongata_contig62769.13855.1|Name=mRNA_H-elongata_contig62769.13855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
YESVPACEGAPMRLELVDPNEKPYVAPMRYHSPEQRGMIHAEVVKLKESG
TIEESTSAWAANCSTVRKSDGIVRVVQDFRGLNSRLRSQSGGLGDLAHIF
DEMGKISCFSSCDLASGFLQLGIHADDRHLTAFRNADGKLWQYVRC*
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mRNA from alignment at H-elongata_contig62769:946..1386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62769.13855.1 ID=mRNA_H-elongata_contig62769.13855.1|Name=mRNA_H-elongata_contig62769.13855.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig62769:946..1386+ (Himanthalia elongata Himel1 dioecious)
TACGAAAGCGTGCCGGCTTGCGAGGGGGCGCCCATGCGCCTCGAGCTGGT
AGACCCCAACGAGAAACCGTACGTAGCGCCGATGCGTTACCACAGTCCGG
AACAGCGGGGGATGATCCACGCCGAAGTGGTCAAACTCAAGGAGAGCGGG
ACGATCGAAGAGTCCACTTCAGCTTGGGCAGCGAACTGCTCCACCGTGCG
CAAGAGCGACGGAATCGTACGCGTGGTTCAGGACTTTCGCGGCCTCAACT
CCCGCCTGAGGTCACAGAGCGGAGGCCTCGGAGACCTAGCGCACATATTT
GACGAGATGGGGAAAATATCGTGTTTCTCAAGCTGCGACCTGGCGTCGGG
GTTTCTACAGCTCGGGATCCACGCGGACGACAGGCACCTGACGGCCTTCC
GCAACGCCGACGGGAAGCTCTGGCAATACGTGCGATGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62769:946..1386+

>mRNA_H-elongata_contig62769.13855.1 ID=mRNA_H-elongata_contig62769.13855.1|Name=mRNA_H-elongata_contig62769.13855.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig62769:946..1386+ (Himanthalia elongata Himel1 dioecious)
TACGAAAGCGTGCCGGCTTGCGAGGGGGCGCCCATGCGCCTCGAGCTGGT
AGACCCCAACGAGAAACCGTACGTAGCGCCGATGCGTTACCACAGTCCGG
AACAGCGGGGGATGATCCACGCCGAAGTGGTCAAACTCAAGGAGAGCGGG
ACGATCGAAGAGTCCACTTCAGCTTGGGCAGCGAACTGCTCCACCGTGCG
CAAGAGCGACGGAATCGTACGCGTGGTTCAGGACTTTCGCGGCCTCAACT
CCCGCCTGAGGTCACAGAGCGGAGGCCTCGGAGACCTAGCGCACATATTT
GACGAGATGGGGAAAATATCGTGTTTCTCAAGCTGCGACCTGGCGTCGGG
GTTTCTACAGCTCGGGATCCACGCGGACGACAGGCACCTGACGGCCTTCC
GCAACGCCGACGGGAAGCTCTGGCAATACGTGCGATGTTGATACGAAAGC
GTGCCGGCTTGCGAGGGGGCGCCCATGCGCCTCGAGCTGGTAGACCCCAA
CGAGAAACCGTACGTAGCGCCGATGCGTTACCACAGTCCGGAACAGCGGG
GGATGATCCACGCCGAAGTGGTCAAACTCAAGGAGAGCGGGACGATCGAA
GAGTCCACTTCAGCTTGGGCAGCGAACTGCTCCACCGTGCGCAAGAGCGA
CGGAATCGTACGCGTGGTTCAGGACTTTCGCGGCCTCAACTCCCGCCTGA
GGTCACAGAGCGGAGGCCTCGGAGACCTAGCGCACATATTTGACGAGATG
GGGAAAATATCGTGTTTCTCAAGCTGCGACCTGGCGTCGGGGTTTCTACA
GCTCGGGATCCACGCGGACGACAGGCACCTGACGGCCTTCCGCAACGCCG
ACGGGAAGCTCTGGCAATACGTGCGATGTTGA
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