mRNA_H-elongata_contig62714.13851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62714.13851.1
Unique NamemRNA_H-elongata_contig62714.13851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62714.13851.1 vs. uniprot
Match: D7FHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.910e-22
Identity = 62/134 (46.27%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:    1 YIPFGSLGLGEDGSAGALIFRRSLLAARLGIPADRMPDFACLVGNDWIQPNVNVQRIIARNGCNV-----------------NNGQKKRKKITIRSGAN----------STASSAIELVEATGRFFSRFYRDSK 321
            YIPF SLG+G DGSAGAL+FRR+L+AARLGIPAD MPD ACLVGNDWIQP  +V RII ++                     N G         R G N          + ++SA  LVEAT R+ S F R ++
Sbjct:  232 YIPFWSLGVGADGSAGALVFRRTLVAARLGIPADWMPDLACLVGNDWIQPENHVHRIIMQSAAXXXXXXXXXXXXXXXXXAHNAGALASSSAPWRRGCNGNGISSSNGLTVSASAKHLVEATARYLSEFLRHTQ 365
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BLAST of mRNA_H-elongata_contig62714.13851.1 vs. uniprot
Match: A0A6H5KA26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA26_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.260e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 YIPFGSLGLGEDGSAGALIFRRSLLAARLGIPADRMPDFACLVGNDWIQPNVNVQR 168
            YIPF SLG+G DGSAGAL+FRR+L+AARLGIPAD MPD ACLVGNDWIQP  +V R
Sbjct:  200 YIPFWSLGVGADGSAGALVFRRTLVAARLGIPADWMPDLACLVGNDWIQPENHVHR 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62714.13851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB0_ECTSI5.910e-2246.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA26_9PHAE6.260e-2078.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62714contigH-elongata_contig62714:1683..3296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62714.13851.1prot_H-elongata_contig62714.13851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62714 1683..3296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.9049191-CDS-H-elongata_contig62714:1682..18751622931010.9049191-CDS-H-elongata_contig62714:1682..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62714 1683..1875 -
1691679661.346841-CDS-H-elongata_contig62714:1682..18751691679661.346841-CDS-H-elongata_contig62714:1682..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62714 1683..1875 -
1622931010.9226053-CDS-H-elongata_contig62714:2818..29061622931010.9226053-CDS-H-elongata_contig62714:2818..2906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62714 2819..2906 -
1691679661.355657-CDS-H-elongata_contig62714:2818..29061691679661.355657-CDS-H-elongata_contig62714:2818..2906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62714 2819..2906 -
1622931010.943467-CDS-H-elongata_contig62714:3217..32961622931010.943467-CDS-H-elongata_contig62714:3217..3296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62714 3218..3296 -
1691679661.3654795-CDS-H-elongata_contig62714:3217..32961691679661.3654795-CDS-H-elongata_contig62714:3217..3296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62714 3218..3296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62714.13851.1

>prot_H-elongata_contig62714.13851.1 ID=prot_H-elongata_contig62714.13851.1|Name=mRNA_H-elongata_contig62714.13851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
YIPFGSLGLGEDGSAGALIFRRSLLAARLGIPADRMPDFACLVGNDWIQP
NVNVQRIIARNGCNVNNGQKKRKKITIRSGANSTASSAIELVEATGRFFS
RFYRDSKPLQGKRPSSPVRA
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mRNA from alignment at H-elongata_contig62714:1683..3296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62714.13851.1 ID=mRNA_H-elongata_contig62714.13851.1|Name=mRNA_H-elongata_contig62714.13851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1614bp|location=Sequence derived from alignment at H-elongata_contig62714:1683..3296- (Himanthalia elongata Himel1 dioecious)
TACATTCCCTTCGGGTCGCTTGGGCTGGGCGAGGACGGATCGGCCGGCGC
CCTCATCTTCCGTCGATCGTTGCTGGCAGGTAGCGACCCTTACCGCAGCA
CCGCATATATACAGTAGCGACCCTTACCGTAGCACCGCATATTCCATAGG
TAGACTGTCATACACCTTAACCCTTTTGGAACTGGATTTCAAGTTTATTA
TTTAATTTAGTCTATAAAAAACAGATCGAGGTTCCATAGGGGTTAAGCAT
GGTGCCCCTTGTTTATTACCTGTAACTACGAGAAATATAGATACTTCTAC
ATATTTAATCATTTTATTTTAAAACCTTTCTAACAACCAACGACGCGACT
CAACTCGGCTCGGCTCGACTCTCTTGCCTGTATGCGTCAGCGAGGCTCGG
TATACCAGCGGATCGAATGCCGGATTTTGCCTGCCTCGTAGGGAACGACT
GGATACAGCCCAACGTCAACGTCCAAAGGTAAGAAGGCGGGGAGGGGACG
GGGACGGGTTATTAATAGTACATCTTGTTACTCGCCCCGTGCTGCAAGAG
TCGCGTCGAGTAATTCATAAAAAGTCTCCTATAATAGTACCAAAGGTGAT
TGGGTCTATCACACGGTTCTCCCTAATATCATACGGGTCCCCCTCATTAC
CACACGGTTCTCCCTTAATACCACACCTAATAACACACGGGTCTCCCTTG
ATACCACACGGTTTTCCCTTAATATCATACGGGTCCCCCTCATTACCACA
CGGGTCCTCCTTAATACCACACGGTTCTCCCTTAATACCACACTCGCCTC
GCTTAATATAACATGGGTCTCCCTCATTACCACACGGGTCCTCCTTAATA
CCACACGGTTCTCCCTTAATACCACATGGTTCTCCTTTAATATAACATGG
ATCCCCTCATTACCACACGGGTCCTCCTTAATACCACACGGTTCTCTCTT
AATACCACATAAGATTGGGTCTATCCGTATCTTCCCTTTCCCCCCATAGT
AGAATATCGCATGGGTCCCCCTTAATACCAAACATGTCCCCCTTAATACC
ACATGTGTCCCGCTTGATACGAAACGGGCCCCCTTTAATTCCACACGTGC
CCCCCCCTTGATACTATACGGGTCCCCCTTAATACCACACGGGTCCCCCT
TAATATAACACAGGCCCCCCTTAATATGACACGGGTCCCCCGTAATACCA
CAGGAGTCTCCCCTAATACCACACAGATCTCCCTTAAAAAATAACAACCA
TGCGCATACTCTAATATAGTTTAAGGGAAGCCTTACAAGAACAAGTGTGA
CTGCGGAGCGATTCCCCCATCATTTGCCTATTGGGTTGAGAGTCACCCGT
CGCCACCTGTAAGCCGTGAGCCTAAGCGTGTATATCTTCATCCGCTGTGT
TTCGCGCTGGACCATCCTCAGGATCATCGCCAGGAACGGTTGTAACGTCA
ACAACGGTCAGAAAAAAAGAAAGAAAATCACCATTCGAAGCGGCGCCAAT
TCCACCGCATCCTCGGCGATAGAGCTTGTGGAAGCCACGGGGCGATTTTT
CTCTCGTTTCTACCGCGACAGCAAACCCCTCCAGGGAAAACGCCCCTCCA
GTCCCGTTCGAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig62714:1683..3296-

>mRNA_H-elongata_contig62714.13851.1 ID=mRNA_H-elongata_contig62714.13851.1|Name=mRNA_H-elongata_contig62714.13851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig62714:1683..3296- (Himanthalia elongata Himel1 dioecious)
TACATTCCCTTCGGGTCGCTTGGGCTGGGCGAGGACGGATCGGCCGGCGC
CCTCATCTTCCGTCGATCGTTGCTGGCAGTACATTCCCTTCGGGTCGCTT
GGGCTGGGCGAGGACGGATCGGCCGGCGCCCTCATCTTCCGTCGATCGTT
GCTGGCAGCGAGGCTCGGTATACCAGCGGATCGAATGCCGGATTTTGCCT
GCCTCGTAGGGAACGACTGGATACAGCCCAACGTCAACGTCCAAAGCGAG
GCTCGGTATACCAGCGGATCGAATGCCGGATTTTGCCTGCCTCGTAGGGA
ACGACTGGATACAGCCCAACGTCAACGTCCAAAGGATCATCGCCAGGAAC
GGTTGTAACGTCAACAACGGTCAGAAAAAAAGAAAGAAAATCACCATTCG
AAGCGGCGCCAATTCCACCGCATCCTCGGCGATAGAGCTTGTGGAAGCCA
CGGGGCGATTTTTCTCTCGTTTCTACCGCGACAGCAAACCCCTCCAGGGA
AAACGCCCCTCCAGTCCCGTTCGAGCGGATCATCGCCAGGAACGGTTGTA
ACGTCAACAACGGTCAGAAAAAAAGAAAGAAAATCACCATTCGAAGCGGC
GCCAATTCCACCGCATCCTCGGCGATAGAGCTTGTGGAAGCCACGGGGCG
ATTTTTCTCTCGTTTCTACCGCGACAGCAAACCCCTCCAGGGAAAACGCC
CCTCCAGTCCCGTTCGAGCG
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