mRNA_H-elongata_contig6267.13842.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI) HSP 1 Score: 262 bits (669), Expect = 1.680e-69 Identity = 299/906 (33.00%), Postives = 401/906 (44.26%), Query Frame = 3
Query: 75 MPKEATCDVECAMKVESLRILNKKRKQQQRTDTSGAGTSCPSGAG-NGRGLKRSFPGSPGTEPQLGKGNS------------------------EPPLDCDAVCGGNAPDNSKSSLINRGNSKDSKDSA-RRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGAKGLGGGTAAAAIKAAAAAV------SEAKGGVPRTFSDPASESHEGGCDMKCECHNSASSLPETATEDATLAIGVVTPLECDREVEVPPKISNTGESGGAVEAEDVAVARSETSGGSDERPAHNDHGGDKDAERSPGSTQASRAEAGANQPTQPIHTGNVHVMTGALVQSHLELLSKGINMQIRFHHHLHQVVESQRKLQAELLAGQ-RDHLPPILSEPGSPRVITSAADTLIPATIGPSPIDHPLGGLRQAECSPRDRNMSGAARFLGADGGLPNDSVFDLNVPRSVWEIPGAAKMVSSPTSLAEAIAEANGLV-------------------GVSSAASSQSMKQSSPPL--HASDSTLDSAAPGSAHASGDAPRDIA----PPVDLRYKS-----RTPDVAPMSHFNPAA--------------VPPARNRSKMSSPRVGM-PRRGYVPGEYTLRYRV-----SGAVA--AGDQPHIRRSAEVVGQRA-GDHSGMAAAQCGAEARGALAAATGLTVSATPIGTPEREALALKRQMQTQLEMHRTVVGACTGQAN--------GGGAERFPVASRVF-PALAEVGGGNSGNNARIEAMGARINSGAGGEVAGTMIG---EACRLGVSGAGGGNYHPQESVEASTLLGLLQDSDILDLNWLDRS-DLKSV-----DQGPTSARQAGEEQPSLLSLFME 2480
MPKEATCDVECAMKVE +RI++KKRKQ QR + GA + + KR S G S SK +A RRRFVWSVPLHQDFVAAVFD+GLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY YLTDLDG K LG + K P D +E+ E C C+C +++ + + + G + E D E S TG A A S DE + G A+ + G T+A GA + P V+ GAL+ SHLELL+KGI+MQ++FH+HL +VVESQ++LQA+L+ Q R+H+P +E + C P D +G+ +GA+G ++ VP+ V + G S + +++++ LV G +AA+ + ++ P + HA S L+ AA +A S D+ R A P V + R D F+PAA V P+ ++ G+ P RGY+ G+YTL + SG +A A QP + + + G+ A G H + AA+ AEAR ALA+AT V++T + +E L L+R MQ Q+ M ++++ AC QA GG V PA E GGG A GA G G+ AG +G E RL + P ++ + S ++GLL D+ D LDR +LKS GP AR G+E +L S ME
Sbjct: 1 MPKEATCDVECAMKVEEIRIMSKKRKQSQRVGGGNGALASEEGANISAKAAKRPLSNSNGCGAGTQSAKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLGXXXXXXXXXXXXXXXXXXXXXDDVKDFSPGRGRD--AETPE--CGSSCDCVDTSK-----LSGGSGIGGGSNSLAETDGRGEAARSKSTTG----------FAQAAS-----GDEGAKGSGGGAKASAQLAGGGTEA---VGGAQRLQLPGEAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGREHVPQHPAEFSGXXXXXXXXXXXXXXXXXXXXXXXAASAV--GFCPPSDLQYAGS--IVGAEG--------NIRVPKEVHLVGGGCGSGVSTAGYSSNLSDSSSLVWSGGGEDKLAGSPKEAEQGGRGAAAAERPRRRERPGVLNHAGASQLEGAA--AADVSMDSARAAASKARPSVADHMRGDGTGERLGDGQQQQQFDPAAMREAFSVQAVAGRVVAPSHSQGLSGRQGAGLAPPRGYMAGDYTLTPKAPEDGGSGRLAPHARGQPAVLGAELLAGEGALGAHKSIFAARSPAEARVALASATLAPVTSTGNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFGQRGWCGGXXXXXXXXXXVATPAFGEAGGG-----ALRGGSGAGKEGGXNGDGAGADLGNSKEQQRLDSL-----SLQPSDAGDPSAMMGLLPQDDMFDFGMLDREGELKSALGDSTPPGPPVARPNGDEHSTLFSFLME 855
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A6H5KUD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD1_9PHAE) HSP 1 Score: 191 bits (486), Expect = 2.070e-46 Identity = 267/908 (29.41%), Postives = 361/908 (39.76%), Query Frame = 3
Query: 57 GEFTLRMPKEATCDVECAMKVESLRILNKKRKQQQRTDTSGAGTSCPSGAGNGRGLKRSFPGS---------PGTEPQLGKGNSEPPLDCDAVCGGNAPDNSKSSLINRGNSKDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGAKGLGGGTAAAAIKAAAAAVSEAKGGVPRTFSDPASESHEGGCDMKCECHNSASSLPETATEDATLAIGVVTPLECDREVEVPPKISNTGESGGAVEAEDVAVARSETSGGSDERPAHNDHGGDKDAERSPGSTQASRAEAGAN-------QPTQPIHTGNVHVMTGALVQSHLELLSKGINMQIRFHHHLHQVVESQRKLQAELLAGQ-RDHLPPILSEPGS---------------PRVITSAADTLIPATIG---PSPIDHPLGGLRQAECS---PRDRNMSGAARFLGADGGLPNDSVFDLNVPRSVWEIPGAAKMVSSPTSLAEAIAEANGLVGVSSAASSQSMKQSSPPL---HASDSTLDSAAPGSAHASGDAPRDIAPPVDLRYKSRTP---------DVAPMSHFNPAA-------------VPPARNRSKMSSPRVGM--PRRGYVPGEYTLRYRV---SGAVAAGDQPHIRRS---AEVVGQRA--GDHSGMAAAQCGAEARGALAAATGLTVSATPIGTPEREALALKRQMQTQLEMHRTVVGACTGQANG---------------------GGAERFPVASRVFPALAEVGGGNSGNNARIEAMGARINSGAGGEVAGTMIGEACRLGVSGAGGGNYHPQESVEASTLLGLLQDSDILDLNWLDRS-DLKSVD-----QGPTSARQAGEEQPSLLSLFME 2480
GE +LRMPKEATCDVECAMKVE +RI++KKRKQ QR P QL +ARRRFVWSVPLHQDFVAAVFD+GLKCASPKLLLEMMPVVDGLTSEHIKSHLQK R L D +G R P GC C+C + T + + GV +GE ARS+++ G + A+ D G AE S G +AS AG Q Q V+ GAL+ SHLELL+KGI+MQ++FH+HL +VVESQ++LQA+L+ Q +HLP +E P + +G PS + + G AE + P++ ++ G G + ++ D + VW G + SP + G AA ++ ++ P + S L++AA +A S DA R A D F+PAA V P+ ++ G+ P+R YVPG+YTL + GA QP + + AE++G G H + AA+ AEAR ALAAA V++T + +E L L+R MQ Q+ M ++++ AC QA GG PA E GGG + + G+ GAG ++ E RL + P ++ + S ++GLL D+ D LDR +LKS G AR G+E +L S ME
Sbjct: 6 GESSLRMPKEATCDVECAMKVEEIRIMSKKRKQSQRVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPADQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKPRX--AAXXXXXXXXXXDLKDFSPGRG-------------------------RDAETP-------GCGSSCDCVD---------TSNLSGGSGVXXXXXXXX------XXXGSGE-----------AARSKSTTGF-AQTANRDEG----AEGSGGGAKASAQLAGGGTEAVGGAQRLQLPGEAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGTEHLPKHPAEFSGXXXXXXXXXXXXRAFPXXXXXXXXXTTASAVGVCPPSDLQY-AGSNVGAEANNRAPKEVHLVGGGCGSGVSTAGCSSTLSDSS--SLVWSRGGEDRPAGSPKEAEQ---------GGKDAAPAERPRRRERPCALNYEGASQLEAAA--AADVSMDAARATASKARQSVADHIRGDGTGEHLGDAQQQQQFDPAAMREAFSVQAGAGRVGPSHSQGLSGRQGAGLAAPQR-YVPGDYTLTPKAPKNGGAGRVAPQPRGQPAVLGAELLGGEGALGAHKAIFAARSPAEARAALAAAALAPVTSTDNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFDRRGWCGGGGXXXXXXXXXXGGXXXXXXXXVATPAFGEAGGGALRGGSGVGKEGSGNGHGAGADLGNNK--EQQRLDSL-----SLQPSDAGDPSAMMGLLHQDDMFDFGMLDREGELKSAPGDSTPPGSAVARPNGDEHSTLFSFLME 826
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.220e-20 Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 3
Query: 300 DAVCGGNAPDNSKSSLINRGNSKDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGAKGLG 629
D GG P + + N + +S A++RFVW LH+DFVAA+FD+GLKCASPK ++EMM LT +HIKSHLQKYRLHR+R+REEFL+ +G + GA G G
Sbjct: 27 DGTEGGAGPHQYRGASENASVTSESS-KAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTG 135
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.710e-20 Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query: 369 DSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYG 593
++ AR+RFVW LH+DFVAA+FD+GLKCASPK +LEMM LT +HIKSHLQKYRLHR+R+REEFL+ +G
Sbjct: 70 NNNSKARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFG 144
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 9.990e-20 Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 3
Query: 393 RFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 590
RFVW LH FV A+FD+GLK ASP++LL+MMP GLT+EH+KSHLQK+RLHR +SREEFL +
Sbjct: 1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKH 66
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.130e-16 Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 3
Query: 354 RGNSKDSKDSARRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 590
R +KD+ +RF W LH+DFVAA+FD+GLK +SP +LE MP + +TSE +KSHLQKYR+HR +S++EF+ SY
Sbjct: 72 RRKAKDTDPRWSKRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSY 150
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.650e-16 Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 3
Query: 390 RRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 590
RRF W LH+DFV+AVFD+GLK +SP LLE MP + +TSE IKSHLQKYRLHRQ+S++EF+ SY
Sbjct: 158 RRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSY 224
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 5.060e-16 Identity = 67/161 (41.61%), Postives = 92/161 (57.14%), Query Frame = 3
Query: 360 NSKDSKDSA-RRRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY-GYLTDL-------DGA--KGLGGGTAAAAIKAAAAAVSEAKGGVPR----TFSDPASESHEGGCDMKCECHNSASSLPETAT 797
NSK + D +RF W LH+DFV+A+FD+GLK +SP LLE MP + +T+E IKSHLQKYRLHR +S++EF+ +Y L L DG+ K L GG+ A + AA + KGG + PAS + EG + ++AS+ TAT
Sbjct: 182 NSKSNNDGRWSKRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHRVKSKQEFMHTYTATLQQLQAGTVGKDGSNNKTLNGGSVAGQLTYAAMTNKDTKGGASAESATATTKPASATEEGAQVPQEVASSTASTKAATAT 342
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A7S4J0U6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J0U6_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.460e-16 Identity = 79/215 (36.74%), Postives = 103/215 (47.91%), Query Frame = 3
Query: 318 NAPDNSKSSLINRGNSKDSKDSAR--RRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY------------GYLTDLDGAKGLGGGTAAAAIKAAAAAVSEAKGGVPRTFSDPASESHEGGCDMKCECHNSASSLP-----ETATEDATLAIGVVTPLECDREVEVPPKISNTGE-SGGAV 902
N D +S +R K K R +RF W LH++FV+AVFD+GLK +SP +LE M + +TSE IKSHLQKYRLHRQRS+ EF+ SY G L D D + L G AAA + + T SDP S+ G K E S LP + A+ A +IG ++ + K N G SGGA+
Sbjct: 380 NGSDEGSNSSRSRSRKKGGKADCRWSKRFQWPDELHREFVSAVFDVGLKHSSPSAILEHMTPNEAITSERIKSHLQKYRLHRQRSKREFMSSYDSAMGQFKSAPGGVLGDPDEVRTLNCGEAAAHLSCS-------------TSSDPNSKMVAG---AKSETTPPMSPLPASNKTDMASTPAQASIGASAQIQTQQRARTEEKSFNQGSFSGGAL 578
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Match: A0A6V0AEB9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0AEB9_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 9.340e-15 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 3
Query: 360 NSKDSKDSAR--RRFVWSVPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 590
N K K+ R +RF W LH+DFV+A+FD+GLK ASP ++E MP + +T+E IKSHLQKYRLHR +S++EF+ SY
Sbjct: 287 NKKSKKEDGRWSKRFTWPEDLHRDFVSAIFDVGLKHASPSSIMEHMPKHEQITTERIKSHLQKYRLHRVKSKKEFISSY 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6267.13842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6267.13842.1 >prot_H-elongata_contig6267.13842.1 ID=prot_H-elongata_contig6267.13842.1|Name=mRNA_H-elongata_contig6267.13842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=816bp MAEAITHGEFTLRMPKEATCDVECAMKVESLRILNKKRKQQQRTDTSGAGback to top mRNA from alignment at H-elongata_contig6267:2087..6834+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6267.13842.1 ID=mRNA_H-elongata_contig6267.13842.1|Name=mRNA_H-elongata_contig6267.13842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4748bp|location=Sequence derived from alignment at H-elongata_contig6267:2087..6834+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6267:2087..6834+ >mRNA_H-elongata_contig6267.13842.1 ID=mRNA_H-elongata_contig6267.13842.1|Name=mRNA_H-elongata_contig6267.13842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4896bp|location=Sequence derived from alignment at H-elongata_contig6267:2087..6834+ (Himanthalia elongata Himel1 dioecious)back to top |