mRNA_H-elongata_contig62647.13840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62647.13840.1
Unique NamemRNA_H-elongata_contig62647.13840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: D7G8I2_ECTSI (Ipi1_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I2_ECTSI)

HSP 1 Score: 652 bits (1682), Expect = 1.010e-218
Identity = 398/736 (54.08%), Postives = 478/736 (64.95%), Query Frame = 1 
Query:    7 LRTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNYAALLSVEPGTKRQAGREAALRSLGSLFGAVSLRYGGEDGTGSFPGIDNAPACVMRDGSGPVCLLWKRGSWRNGALVLCPSSASAASKLGSNPCDGAGSAGTDL---RLRTLLATLPRMLEKLREVWMEAIATNPSDVGVMQSVVDVLLAIIA--AFPSSVGGAVVGGNVPGGSRRVDHTTFLPLWRVEKGHRTIGKGEDLVCADLLAWFAQFVPLILEAFPLRPQEGELLLEGAVEIQRLQAIERLNMGLCELVVAAYAGPAANSPAGGVGVGVE-VGDGGDASDWLSPVLAHVHEVLRGGAGKTGPLGPPIPSVLRVLSAATRNHGGKVAAKGSVGWTARRQELLASFGNFFESLSPRSEAKLLCVRFVCHVTKTLLSSSATNNSATSGKAAANNPEVAREVRRWLQSLPELLCIWEAEFPASSAASIRSLVEVAKLA-PVPSPLSP------GDEKEKKAKDKPPVTIAAGG---------AWVFESLNLLRSIKPAVLEEFFTGRGFPCLQVSAQMDAISLLYHLPSIPACVVSALASVCSEPDALRDDVRSFVLEV 2148
            L+ KVGK+AP +ASHTDTSFKSKRVKVSAQSILHDLG+ +A+TARGQGVQELL+QLRHYSP++KR+AL GL +IVDRHR F E NF RLAEASLEL VC D DVR  LLAFQ+ LL   SAR FSPFANLYMAYVVSAMTSL  GVRRDS++LLALLL RFP+ VA+RAERLAPNYA LL+ +P +K+QAGR  AL+SL SLF AVS RYG                       G   L WK+GS RNGAL+LCP SA+  +    +   G G AG +    +++ L + LP +LE+LREVW+EA+A  P D+G+MQ+VV  LL  IA  A+ ++ GG      +  G R ++    +  W    GH   G G         AWF++FVPL+LEAFP+RP EGELL  G VE +RL+AI+ LNMGLCELVVAA AGP A + A          G G D S+WL+PVLAHVHEVLR    ++G +GP + SVLRVLSAAT N  G  +A     WTA+RQ LL++FG+F ESL    EAKLLC+RFVC +  TLL        A +G+A  ++PE   EV RWL+SLPELLC W  EFP  S A +  LVEVAK A P   PL+       G+                           AW   S  LLRSI+PA+L EFF  +GF  L  +AQ +AIS LYHLPSIP  VV  LA+ CSEP AL  DVRSFVLEV
Sbjct:   22 LKAKVGKRAPQAASHTDTSFKSKRVKVSAQSILHDLGDEDAVTARGQGVQELLVQLRHYSPASKREALAGLKSIVDRHRSFAEVNFARLAEASLELAVCFDNDVRKGLLAFQETLLNCVSARTFSPFANLYMAYVVSAMTSLTKGVRRDSLTLLALLLARFPAAVADRAERLAPNYATLLAADPASKKQAGRAEALQSLVSLFRAVSRRYGSGRSGXXXXXXXXXXXXXXXXXLGTARLSWKQGSRRNGALMLCPCSATVLAGNADSRGGGTGGAGPNADSPQIKALASILPTVLERLREVWIEALAAVPPDIGLMQNVVHALLEAIASPAWTAAGGGVADDVRINEGGRGINSGVVVQ-WHTATGH---GSGXXXXXGAS-AWFSRFVPLVLEAFPVRPLEGELL--GNVEEERLRAIQGLNMGLCELVVAACAGPGAITAAAASAPDASGAGGGEDPSEWLAPVLAHVHEVLRDEVRRSGVVGPQMSSVLRVLSAATYNPAGTSSAFSD--WTAQRQRLLSAFGDFLESLPAHCEAKLLCIRFVCCLATTLL------RGAANGEAVGHDPETPPEVCRWLRSLPELLCRWGCEFPRDSEAVLGVLVEVAKHALPPQQPLATRGTNVGGNSNXXXXXXXXXXXXXXXXXXXXXXXXXAWAVASSELLRSIEPALLVEFFGDQGFLLLPAAAQRNAISFLYHLPSIPGKVVCELAAACSEPTALDKDVRSFVLEV 742
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A835YVI7_9STRA (Ipi1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI7_9STRA)

HSP 1 Score: 214 bits (544), Expect = 4.910e-55
Identity = 187/611 (30.61%), Postives = 278/611 (45.50%), Query Frame = 1 
Query:    7 LRTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNYAALLSVEPGTKRQAGREAALRSLGSLFGAVSLRYGGEDGTGSFPGIDNAPACVMRDGSGPVCLLWKRGSWRNGALVLCPSSASAASKLGSNPCDGAGSAGTDLRLRTLLATLPRMLEKLREVWMEAIATNPSDVGVMQSVVDVLLAIIAAFPSSVGGAVVGGNVPGGSRRVDHTTFLPLWRVEKGHRTIGKGEDLVCADLLAWFA-QFVPLILEAFPLRPQEGELLLEGAVEIQRLQAIERLNMGLCELVVAAYAGPAANSPAGGVGVGVEVGDGGDASDWLSPVLAHVHEVLRGGAGKTGPLGPPIPSVLRVLSAATRNHGGKVAAKGSVGWTARRQELLASFGNFFESLSPRSEAKLLCVRFVCHVTKTLLSSSATNNSATSGKAAANNPEVAREVRRWLQSLPELLCIWEAEFPASSAASIRSLVEVAKLAP 1836
            L++KVGKKA    SHTDTSFKSK++ V+ QSIL D       +ARG  + EL IQL+HY+ +TK+DAL+GL +++ RH G  +  F  L+E +L+ + C +G VR+ LL +   LL   S    +PF ++ +AY +SA+T LD GVR+D +S+LALLL R P+ VA RA +L P Y  LL+ +P  K+Q  R +A  SL +L  A +     ++G GS       PA      + P  L+W+  S +N A++L  + A   + LGS      G AG D +   LL  LP +L++L EVW++A        G+ ++                  A +                                     A   AW   Q+ P  + AFPLR        EG+           LN  LCEL VAA  G +A++PA                      +A++ ++L  G                                        R  LL +FG + E L    EAK  C +FVC + +T L+++    +A +  A+        ++  WL++LP LL  W A   A +   + +L+EVA+  P
Sbjct:   23 LKSKVGKKAAKPLSHTDTSFKSKKLFVAKQSILADKEEGEPTSARGHTLSELQIQLKHYATATKKDALLGLRSLLARHPGIAQQRFAALSEGALDCLKCEEGSVRSLLLEYMYELLRDVSTSTLAPFGDIMLAYTISAITQLDRGVRKDGLSMLALLLARCPALVAARAHKLWPIYPPLLASDPAGKKQTIRSSATASLVALLQATT-----QNGKGS-------PAPGAAAAAAPE-LVWQARSSQN-AVLLLRAFAPVPATLGSQ----VGDAG-DAQSAALLGVLPEVLDRLLEVWVDAS-------GLAEAAAGXXXXXXXXXXXXSDPAQLQLVADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATFHAWLERQYFPAAMAAFPLRA-------EGSAXXXXXXX---LNTTLCELTVAA--GSSAHTPA---------------------AVAYMRDMLERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGAARDARAPLLQAFGGYCEGLHGGKEAKAACAQFVCELVRTELNAARPGAAAAAAVASTVTGATMAQLCGWLRALPPLLPAWCASRAALAGDVLATLLEVARRTP 574
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A0L0HS50_SPIPD (Pre-rRNA-processing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HS50_SPIPD)

HSP 1 Score: 125 bits (313), Expect = 8.240e-26
Identity = 63/180 (35.00%), Postives = 113/180 (62.78%), Query Frame = 1 
Query:   10 RTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNYAALLS 549
            + KVGKK P + + TD SF+S+ + V +QSI+ +  +++ + +R Q ++++++QL+HY+  T++DAL+G+  + +RH   +  +   L +A  +L+V  DG+VR  LL+F K L+ +     F PF +L MAY  SAMT +   +R D +  L +  D +P  +A  A+++ PN+ ++LS
Sbjct:   19 KLKVGKKKPPATNQTDVSFRSQAIVVPSQSIIDEKASSDLVNSRKQSLKDIIVQLKHYNAQTRKDALVGIKDLHNRHPEALHAHLSTLLDALSKLLVDDDGNVRKTLLSFLKDLMPTIPKGHFRPFMSLLMAYTCSAMTHISEDIRLDGLRFLRIWQDNYPDLIATYADKVIPNFLSMLS 198
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A507DTJ5_9FUNG (Pre-rRNA-processing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DTJ5_9FUNG)

HSP 1 Score: 107 bits (266), Expect = 4.000e-20
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = 1 
Query:   10 RTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNYAALLSVEPGTKRQAG 579
            + KVGKK   + + TD SFKS+ + V  QS+      +  +  R Q +++L++QLRHYS  +++DAL G+  I  ++    +T    + EA+  ++V  D  VR +LLAF K  + + +     PF +  +AY  SAMT +   +R D +  L +  D +P+ V   AE++ PNY ++LS    ++  AG
Sbjct:   19 KLKVGKKVQPAQNQTDVSFKSQSIVVPNQSLGEVKPASELVNNRNQSLKDLIVQLRHYSSQSRKDALSGIRDIQIKYADTFKTQLSIIMEATAPILVDEDRQVRKSLLAFFKDFIPTVTRDNIRPFLSTILAYTCSAMTHISEDIRLDGLKFLTIWQDFYPTLVVMHAEKVIPNYLSMLSTNGKSQSIAG 208
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A1Y2CQF8_9FUNG (Pre-rRNA-processing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2CQF8_9FUNG)

HSP 1 Score: 105 bits (261), Expect = 1.560e-19
Identity = 57/175 (32.57%), Postives = 100/175 (57.14%), Query Frame = 1 
Query:   10 RTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNY 534
            + KVGKK    ++ TD SFK+K + +  Q ++ +    +  ++R   ++ELL+Q++HYS  T++DAL G+  I       +  N G + E ++ + +  + DVR+ALL F K L+         PF +++MAY+ SAMT +   +R DS+  L L ++ FP+     +++L PN+
Sbjct:   20 KLKVGKKKLAPSTQTDISFKTKAIYIPDQGLVEE--KKDITSSRNLTLKELLVQIKHYSGITRKDALTGIKEIYTNFPNEIYLNLGNVFEKTIPIFIDKEPDVRSALLQFYKVLIPDLKQDQIKPFMSIFMAYLCSAMTHIFEDIRLDSLKFLKLFIENFPTLTIHYSDKLIPNF 192
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A1Y1VCV9_9FUNG (Pre-rRNA-processing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VCV9_9FUNG)

HSP 1 Score: 103 bits (256), Expect = 5.650e-19
Identity = 61/175 (34.86%), Postives = 97/175 (55.43%), Query Frame = 1 
Query:   10 RTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNY 534
            + KVGKK    ++ TD SFKSK + +  Q I  +        +R   ++ELL+Q++HYS  T++DAL G+  I   +   +  N G + E ++ ++V  + DVR ALL F KAL+         PF +++MAY+ SAMT +   +R DS+  L L +D  P+     + +L PN+
Sbjct:   47 KLKVGKKKLAPSTQTDISFKSKAIYIPDQGITEEK-KKEVTNSRNLTLKELLVQVKHYSSVTRKDALNGIKEIYTNYPDEIFLNLGTIFEKTIPVLVDKEPDVRLALLQFFKALIPDLKQDQIKPFMSVFMAYLCSAMTHILEDIRLDSLKFLKLFIDNHPTLTIHYSNKLIPNF 220
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A1R1Y891_9FUNG (Pre-rRNA-processing protein n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y891_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 5.710e-19
Identity = 58/165 (35.15%), Postives = 97/165 (58.79%), Query Frame = 1 
Query:    7 LRTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDV 501
            ++ KVGKK P + + TDTSFK+K V +S QS+  D  +    T+  + + +LL + +HYSPS ++DALIGL  I+  H   ++T+   L  AS + ++  D +VR A L F K L         + FA+L+  +V++ ++ +   +R+DS+  L +L+D  PS +
Sbjct:   19 VKLKVGKKRPTNDNFTDTSFKTKAVTLSTQSVSVDKDSL-LTTSNNRSLPDLLSKAKHYSPSVRKDALIGLIEILTTHNSLIKTDLESLINASCKRIIDDDINVRKANLDFTKLLYQLCELSEIATFADLHAVFVLTGLSHIQEDIRQDSLKFLDILVDYVPSQI 182
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: R7THZ5_CAPTE (Ipi1_N domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7THZ5_CAPTE)

HSP 1 Score: 96.7 bits (239), Expect = 6.460e-19
Identity = 57/189 (30.16%), Postives = 104/189 (55.03%), Query Frame = 1 
Query:    7 LRTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNYAALLSVEPGTKRQ 573
            ++ KVG+K P + + T+T+F+++ +++  Q   H    +   T R   V+ELL Q +H+S S +R+A+ GL+ ++  H   + +N   L E   EL V  D +VR+ +    + L    S +  SPF +L  A++  AMT +   ++ DS+S+L L L+ +PS V   + R+  N+   +S +  T ++
Sbjct:    8 VKLKVGRKLPRADNETNTAFRTRDIQLREQ--FHTADGSEPTTRRKLNVKELLSQCQHFSASVRREAVSGLHELLTFHPDVISSNLSLLLERVSELFVDKDAEVRSNVTKLLRVLFLGISLQNMSPFFSLLSAHLCCAMTHIYDDIKGDSLSILDLCLEHYPSLVTADSSRILENFLEQISAKSNTNKK 194
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A4P9YZS5_9FUNG (Pre-rRNA-processing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YZS5_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 1.400e-18
Identity = 68/192 (35.42%), Postives = 100/192 (52.08%), Query Frame = 1 
Query:   16 KVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERAERLAPNYAALLSVEPGTKRQAGREAA 591
            KVGKK P++ + T TSFK++ + +  QS+  D     A  +R Q +  L  QL+HYS ST+RDAL GL  +   H   + T+ G+L      L+V  D  VR +L  F    L + S    +PF  + + Y  SAMT L+  V+  S+  L L L   P+ V  +  +L PNY  LL+   G    +G+ +A
Sbjct:    2 KVGKKKPVADNATSTSFKAQAIVLPGQSVTADRSQ-QATNSRNQTLGSLTAQLKHYSASTRRDALHGLAELFRIHPYLLATSLGQLVNLLATLLVDEDNQVRRSLYQFLDDFLPTLSKADLAPFLPVLVVYTRSAMTHLNEAVQAGSLQFLDLWLRLAPAFVVAQQAQLMPNYIGLLNGNQGQSSLSGKPSA 192
[Close]
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Match: A0A197JJ36_9FUNG (Pre-rRNA-processing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JJ36_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 3.420e-18
Identity = 66/196 (33.67%), Postives = 102/196 (52.04%), Query Frame = 1 
Query:   10 RTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQGVQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVVCSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRRDSISLLALLLDRFPSDVAERA-ERLAPNYAALLSVEPGTKRQAGREAAL 594
            + KVGKK  ++ S TDTSFKSK + + +QSI HD   A    +R     EL+ QL+HYSP T++DAL+GL  +  RH   +  + G L  + + L++   G VR AL  F    +    AR   PF  L + Y  SAMT +   +R D++  + L +      V     +++ PNY +LL+ +      +   +A+
Sbjct:   20 KLKVGKKKAVADSFTDTSFKSKAISLPSQSISHDK-TALLTNSRNVTFAELMTQLKHYSPGTRKDALLGLRDLFHRHPHLLPLHLGVLVNSVVRLLIDDSGVVRKALQNFLGEFIPMLHARDIHPFLPLLIVYTCSAMTHILDDIREDALKFMDLWVAAGGQVVVNGFWDKIIPNYVSLLTSDSNATNSSKNASAM 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62647.13840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8I2_ECTSI1.010e-21854.08Ipi1_N domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YVI7_9STRA4.910e-5530.61Ipi1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A0L0HS50_SPIPD8.240e-2635.00Pre-rRNA-processing protein n=2 Tax=Spizellomyces ... [more]
A0A507DTJ5_9FUNG4.000e-2033.16Pre-rRNA-processing protein n=1 Tax=Powellomyces h... [more]
A0A1Y2CQF8_9FUNG1.560e-1932.57Pre-rRNA-processing protein n=1 Tax=Neocallimastix... [more]
A0A1Y1VCV9_9FUNG5.650e-1934.86Pre-rRNA-processing protein n=1 Tax=Piromyces finn... [more]
A0A1R1Y891_9FUNG5.710e-1935.15Pre-rRNA-processing protein n=2 Tax=Smittium culic... [more]
R7THZ5_CAPTE6.460e-1930.16Ipi1_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A4P9YZS5_9FUNG1.400e-1835.42Pre-rRNA-processing protein (Fragment) n=1 Tax=Syn... [more]
A0A197JJ36_9FUNG3.420e-1833.67Pre-rRNA-processing protein n=1 Tax=Linnemannia el... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62647contigH-elongata_contig62647:359..3324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score661.4
Seed ortholog evalue4.9e-187
Seed eggNOG ortholog2880.D7G8I2
Preferred nameTEX10
KEGG koko:K14827
GOsGO:0000027,GO:0000228,GO:0000463,GO:0000470,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006275,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010556,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030174,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0034708,GO:0035097,GO:0036388,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044786,GO:0046483,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097344,GO:1901360,GO:1901576,GO:1902299,GO:1902494,GO:1990234,GO:1990904,GO:2000112
EggNOG free text desc.Testis-expressed sequence 10 protein
EggNOG OGsKOG2149@1,KOG2149@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size2157
Cds size2157
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62647.13840.1prot_H-elongata_contig62647.13840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62647 359..3324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.3821247-CDS-H-elongata_contig62647:358..9741622931009.3821247-CDS-H-elongata_contig62647:358..974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 359..974 -
1691679660.657111-CDS-H-elongata_contig62647:358..9741691679660.657111-CDS-H-elongata_contig62647:358..974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 359..974 -
1622931009.3994062-CDS-H-elongata_contig62647:1228..24461622931009.3994062-CDS-H-elongata_contig62647:1228..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 1229..2446 -
1691679660.6710525-CDS-H-elongata_contig62647:1228..24461691679660.6710525-CDS-H-elongata_contig62647:1228..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 1229..2446 -
1622931009.4157565-CDS-H-elongata_contig62647:2751..29181622931009.4157565-CDS-H-elongata_contig62647:2751..2918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 2752..2918 -
1691679660.679844-CDS-H-elongata_contig62647:2751..29181691679660.679844-CDS-H-elongata_contig62647:2751..2918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 2752..2918 -
1622931009.4308534-CDS-H-elongata_contig62647:3168..33241622931009.4308534-CDS-H-elongata_contig62647:3168..3324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 3169..3324 -
1691679660.6884015-CDS-H-elongata_contig62647:3168..33241691679660.6884015-CDS-H-elongata_contig62647:3168..3324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62647 3169..3324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62647.13840.1

>prot_H-elongata_contig62647.13840.1 ID=prot_H-elongata_contig62647.13840.1|Name=mRNA_H-elongata_contig62647.13840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=719bp
MILRTKVGKKAPLSASHTDTSFKSKRVKVSAQSILHDLGNANAITARGQG
VQELLIQLRHYSPSTKRDALIGLNAIVDRHRGFVETNFGRLAEASLELVV
CSDGDVRTALLAFQKALLASASARIFSPFANLYMAYVVSAMTSLDGGVRR
DSISLLALLLDRFPSDVAERAERLAPNYAALLSVEPGTKRQAGREAALRS
LGSLFGAVSLRYGGEDGTGSFPGIDNAPACVMRDGSGPVCLLWKRGSWRN
GALVLCPSSASAASKLGSNPCDGAGSAGTDLRLRTLLATLPRMLEKLREV
WMEAIATNPSDVGVMQSVVDVLLAIIAAFPSSVGGAVVGGNVPGGSRRVD
HTTFLPLWRVEKGHRTIGKGEDLVCADLLAWFAQFVPLILEAFPLRPQEG
ELLLEGAVEIQRLQAIERLNMGLCELVVAAYAGPAANSPAGGVGVGVEVG
DGGDASDWLSPVLAHVHEVLRGGAGKTGPLGPPIPSVLRVLSAATRNHGG
KVAAKGSVGWTARRQELLASFGNFFESLSPRSEAKLLCVRFVCHVTKTLL
SSSATNNSATSGKAAANNPEVAREVRRWLQSLPELLCIWEAEFPASSAAS
IRSLVEVAKLAPVPSPLSPGDEKEKKAKDKPPVTIAAGGAWVFESLNLLR
SIKPAVLEEFFTGRGFPCLQVSAQMDAISLLYHLPSIPACVVSALASVCS
EPDALRDDVRSFVLEVSC*
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mRNA from alignment at H-elongata_contig62647:359..3324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62647.13840.1 ID=mRNA_H-elongata_contig62647.13840.1|Name=mRNA_H-elongata_contig62647.13840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2966bp|location=Sequence derived from alignment at H-elongata_contig62647:359..3324- (Himanthalia elongata Himel1 dioecious)
ATGATACTTCGTACAAAGGTCGGCAAGAAAGCCCCTCTGTCAGCAAGCCA
CACGGACACGTCTTTCAAGAGCAAGCGGGTCAAGGTTTCTGCGCAGAGCA
TCTTGCACGACCTCGGTAATGCCAACGCCATCACCGCCAGAGGACAGGGG
GTGCAGGTGAGCTGTTCCGTGGCACCCGCGCTTTGTCTGTTCATTTTTTC
GTACTTTGTCTAGAATATAATAATTTCTCTCCCCCCCCCCCCCCTCTCTC
TCTCTCTTGAGAAAGGATAAAAATATGCACACGAAAAGTCCCAATAATCG
CTGCTACTGCTATACCTTTTTCGGGGTAAGAGCATTCAAACTAGTAATGA
CATGTGTTTTCTCTGAACAGCGCCGACGCGGTATCCCCTCTTATTTTGTC
CGTCAGGAGCTCTTGATCCAGCTTCGCCACTACAGCCCTTCGACCAAGCG
CGATGCGTTGATCGGCCTGAATGCCATCGTGGATCGCCACCGTGGTTTTG
TCGAGACGAACTTCGGTAGATTGGCTGAGGCCAGCCTCGAGTTGGTCGTG
TGTTCTGACGGCGACGTGCGAACGTGAGCCAAGAAACGAGACGGGCGCTG
TTGTACAGTACCATGAAGCTGCTGCTAGGAACGTGTTGACATAGCAGCAC
GAGGGGGCGAACACGATAAAACACGCGTGATTCAGAGTTTTTCTTGGTCC
CACTGCCATCGAGACTTTTGACAGCTGTCTTCGAGGCAGCGCTCGTTTGC
TTGTGCTGCCCTTCCGTTTTGTTTTTGTAGGTATACATTATCACGCTTTT
GGAAATATTTCCCTTGCGAAGGAAATGTAGTGATGATCGCTACCACCGCA
CCTGTTGATATCCTTTCTTCATCCCCAGGGCGTTGCTAGCTTTTCAGAAG
GCGTTGCTCGCCTCCGCATCCGCTAGGATCTTCTCTCCGTTCGCGAACCT
ATACATGGCCTACGTGGTGAGCGCGATGACTAGCTTGGACGGTGGCGTTC
GACGCGATAGCATTTCCCTCCTTGCTCTCCTGCTCGATCGTTTCCCCTCT
GATGTTGCCGAGCGTGCCGAGCGTTTGGCGCCAAACTACGCGGCCCTCCT
CTCTGTGGAGCCCGGCACAAAAAGGCAGGCCGGAAGGGAGGCAGCGCTGA
GGAGCCTAGGAAGTTTGTTTGGAGCCGTCTCTCTGCGGTACGGTGGAGAA
GACGGGACCGGTTCCTTCCCGGGTATAGACAACGCCCCCGCTTGCGTGAT
GAGGGACGGCTCGGGCCCCGTGTGTCTGTTGTGGAAACGAGGCTCTTGGA
GAAACGGCGCGCTTGTGTTGTGCCCGTCGTCTGCCTCGGCGGCGTCAAAA
CTAGGGAGCAATCCTTGCGACGGAGCAGGCAGTGCGGGGACGGATTTGCG
GTTAAGGACGTTGCTTGCCACCCTACCTCGGATGCTTGAGAAATTGAGGG
AGGTATGGATGGAAGCTATCGCAACAAATCCTTCAGACGTTGGCGTTATG
CAAAGCGTCGTGGACGTGCTGCTGGCGATTATCGCTGCCTTTCCGTCGAG
CGTGGGGGGTGCGGTCGTAGGCGGGAACGTTCCCGGCGGAAGTCGCAGGG
TCGACCATACGACTTTTCTGCCACTATGGCGCGTCGAGAAGGGCCACAGG
ACGATTGGGAAGGGCGAAGACTTGGTTTGCGCTGATTTGTTGGCGTGGTT
TGCGCAGTTCGTGCCGCTGATTCTGGAGGCGTTTCCATTGCGACCGCAAG
AAGGAGAACTGCTGCTGGAAGGTGCGGTGGAGATCCAGCGCTTGCAAGCC
ATCGAGAGGCTAAACATGGGACTGTGTGAGCTTGTCGTTGCGGCGTACGC
CGGCCCCGCAGCCAACTCCCCCGCGGGGGGTGTCGGAGTCGGGGTTGAGG
TTGGTGACGGAGGAGATGCGTCGGACTGGCTCTCGCCTGTCCTGGCGCAC
GTTCATGAGGTTCTGCGTGGCGGAGCAGGAAAAACTGGTCCCTTGGGGCC
GCCCATTCCGAGCGTGCTGCGGGTGCTGAGCGCCGCAACACGCAACCACG
GAGGGAAGGTGGCTGCAAAGGGATCGGTCGGGTGGACGGCGCGGAGGTAA
ATGACTCGTGATCGCGATGTGACTTATAATGTTTCTTGTAACGTTACCTC
GCGCGCCTCATTGCAGTTGTTATACTTCTTGGTTGAAATGAGGTGATCCC
GGGTGATTAGTGAGTGCCTTGGTGTGCATCTTTTCAGTTCCACCCCATGT
TCGAGCAATCCAGACATATCTTACCACATCCCCGATGCCCCTCCCACCGT
GTAACGAAAAATCCCCCTCATTGATGGGGAAAACCCGCCTCCGATGGCAG
ACAAGAGCTTCTGGCATCGTTCGGTAACTTCTTCGAGTCCCTGTCCCCCC
GCTCCGAGGCCAAGCTGTTGTGTGTGAGGTTTGTGTGCCACGTGACTAAG
ACGCTGCTGTCGAGCTCGGCCACTAATAATAGCGCTACTTCCGGGAAGGC
AGCGGCAAATAATCCTGAGGTCGCTCGAGAGGTGCGTCGGTGGCTCCAGT
CGCTACCCGAGCTGCTGTGTATCTGGGAAGCGGAGTTCCCCGCGAGCTCG
GCGGCGTCTATTCGATCCCTCGTCGAGGTGGCCAAGCTCGCCCCCGTGCC
GTCTCCATTGTCTCCCGGCGACGAAAAAGAAAAAAAGGCGAAAGACAAGC
CGCCTGTGACGATCGCGGCCGGAGGAGCGTGGGTCTTCGAGTCGTTGAAT
CTTCTTCGCTCCATAAAGCCAGCGGTGCTGGAGGAGTTTTTTACCGGTCG
AGGGTTTCCGTGCCTGCAGGTGTCGGCCCAGATGGACGCCATATCGCTGC
TCTACCACCTACCGTCGATTCCGGCCTGTGTGGTGTCGGCGCTCGCCTCG
GTGTGCTCGGAGCCCGATGCACTTCGCGACGATGTTCGGTCGTTCGTGCT
AGAGGTGAGCTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62647:359..3324-

>mRNA_H-elongata_contig62647.13840.1 ID=mRNA_H-elongata_contig62647.13840.1|Name=mRNA_H-elongata_contig62647.13840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4314bp|location=Sequence derived from alignment at H-elongata_contig62647:359..3324- (Himanthalia elongata Himel1 dioecious)
ATGATACTTCGTACAAAGGTCGGCAAGAAAGCCCCTCTGTCAGCAAGCCA
CACGGACACGTCTTTCAAGAGCAAGCGGGTCAAGGTTTCTGCGCAGAGCA
TCTTGCACGACCTCGGTAATGCCAACGCCATCACCGCCAGAGGACAGGGG
GTGCAGATGATACTTCGTACAAAGGTCGGCAAGAAAGCCCCTCTGTCAGC
AAGCCACACGGACACGTCTTTCAAGAGCAAGCGGGTCAAGGTTTCTGCGC
AGAGCATCTTGCACGACCTCGGTAATGCCAACGCCATCACCGCCAGAGGA
CAGGGGGTGCAGGAGCTCTTGATCCAGCTTCGCCACTACAGCCCTTCGAC
CAAGCGCGATGCGTTGATCGGCCTGAATGCCATCGTGGATCGCCACCGTG
GTTTTGTCGAGACGAACTTCGGTAGATTGGCTGAGGCCAGCCTCGAGTTG
GTCGTGTGTTCTGACGGCGACGTGCGAACGAGCTCTTGATCCAGCTTCGC
CACTACAGCCCTTCGACCAAGCGCGATGCGTTGATCGGCCTGAATGCCAT
CGTGGATCGCCACCGTGGTTTTGTCGAGACGAACTTCGGTAGATTGGCTG
AGGCCAGCCTCGAGTTGGTCGTGTGTTCTGACGGCGACGTGCGAACGGCG
TTGCTAGCTTTTCAGAAGGCGTTGCTCGCCTCCGCATCCGCTAGGATCTT
CTCTCCGTTCGCGAACCTATACATGGCCTACGTGGTGAGCGCGATGACTA
GCTTGGACGGTGGCGTTCGACGCGATAGCATTTCCCTCCTTGCTCTCCTG
CTCGATCGTTTCCCCTCTGATGTTGCCGAGCGTGCCGAGCGTTTGGCGCC
AAACTACGCGGCCCTCCTCTCTGTGGAGCCCGGCACAAAAAGGCAGGCCG
GAAGGGAGGCAGCGCTGAGGAGCCTAGGAAGTTTGTTTGGAGCCGTCTCT
CTGCGGTACGGTGGAGAAGACGGGACCGGTTCCTTCCCGGGTATAGACAA
CGCCCCCGCTTGCGTGATGAGGGACGGCTCGGGCCCCGTGTGTCTGTTGT
GGAAACGAGGCTCTTGGAGAAACGGCGCGCTTGTGTTGTGCCCGTCGTCT
GCCTCGGCGGCGTCAAAACTAGGGAGCAATCCTTGCGACGGAGCAGGCAG
TGCGGGGACGGATTTGCGGTTAAGGACGTTGCTTGCCACCCTACCTCGGA
TGCTTGAGAAATTGAGGGAGGTATGGATGGAAGCTATCGCAACAAATCCT
TCAGACGTTGGCGTTATGCAAAGCGTCGTGGACGTGCTGCTGGCGATTAT
CGCTGCCTTTCCGTCGAGCGTGGGGGGTGCGGTCGTAGGCGGGAACGTTC
CCGGCGGAAGTCGCAGGGTCGACCATACGACTTTTCTGCCACTATGGCGC
GTCGAGAAGGGCCACAGGACGATTGGGAAGGGCGAAGACTTGGTTTGCGC
TGATTTGTTGGCGTGGTTTGCGCAGTTCGTGCCGCTGATTCTGGAGGCGT
TTCCATTGCGACCGCAAGAAGGAGAACTGCTGCTGGAAGGTGCGGTGGAG
ATCCAGCGCTTGCAAGCCATCGAGAGGCTAAACATGGGACTGTGTGAGCT
TGTCGTTGCGGCGTACGCCGGCCCCGCAGCCAACTCCCCCGCGGGGGGTG
TCGGAGTCGGGGTTGAGGTTGGTGACGGAGGAGATGCGTCGGACTGGCTC
TCGCCTGTCCTGGCGCACGTTCATGAGGTTCTGCGTGGCGGAGCAGGAAA
AACTGGTCCCTTGGGGCCGCCCATTCCGAGCGTGCTGCGGGTGCTGAGCG
CCGCAACACGCAACCACGGAGGGAAGGTGGCTGCAAAGGGATCGGTCGGG
TGGACGGCGCGGAGGGCGTTGCTAGCTTTTCAGAAGGCGTTGCTCGCCTC
CGCATCCGCTAGGATCTTCTCTCCGTTCGCGAACCTATACATGGCCTACG
TGGTGAGCGCGATGACTAGCTTGGACGGTGGCGTTCGACGCGATAGCATT
TCCCTCCTTGCTCTCCTGCTCGATCGTTTCCCCTCTGATGTTGCCGAGCG
TGCCGAGCGTTTGGCGCCAAACTACGCGGCCCTCCTCTCTGTGGAGCCCG
GCACAAAAAGGCAGGCCGGAAGGGAGGCAGCGCTGAGGAGCCTAGGAAGT
TTGTTTGGAGCCGTCTCTCTGCGGTACGGTGGAGAAGACGGGACCGGTTC
CTTCCCGGGTATAGACAACGCCCCCGCTTGCGTGATGAGGGACGGCTCGG
GCCCCGTGTGTCTGTTGTGGAAACGAGGCTCTTGGAGAAACGGCGCGCTT
GTGTTGTGCCCGTCGTCTGCCTCGGCGGCGTCAAAACTAGGGAGCAATCC
TTGCGACGGAGCAGGCAGTGCGGGGACGGATTTGCGGTTAAGGACGTTGC
TTGCCACCCTACCTCGGATGCTTGAGAAATTGAGGGAGGTATGGATGGAA
GCTATCGCAACAAATCCTTCAGACGTTGGCGTTATGCAAAGCGTCGTGGA
CGTGCTGCTGGCGATTATCGCTGCCTTTCCGTCGAGCGTGGGGGGTGCGG
TCGTAGGCGGGAACGTTCCCGGCGGAAGTCGCAGGGTCGACCATACGACT
TTTCTGCCACTATGGCGCGTCGAGAAGGGCCACAGGACGATTGGGAAGGG
CGAAGACTTGGTTTGCGCTGATTTGTTGGCGTGGTTTGCGCAGTTCGTGC
CGCTGATTCTGGAGGCGTTTCCATTGCGACCGCAAGAAGGAGAACTGCTG
CTGGAAGGTGCGGTGGAGATCCAGCGCTTGCAAGCCATCGAGAGGCTAAA
CATGGGACTGTGTGAGCTTGTCGTTGCGGCGTACGCCGGCCCCGCAGCCA
ACTCCCCCGCGGGGGGTGTCGGAGTCGGGGTTGAGGTTGGTGACGGAGGA
GATGCGTCGGACTGGCTCTCGCCTGTCCTGGCGCACGTTCATGAGGTTCT
GCGTGGCGGAGCAGGAAAAACTGGTCCCTTGGGGCCGCCCATTCCGAGCG
TGCTGCGGGTGCTGAGCGCCGCAACACGCAACCACGGAGGGAAGGTGGCT
GCAAAGGGATCGGTCGGGTGGACGGCGCGGAGACAAGAGCTTCTGGCATC
GTTCGGTAACTTCTTCGAGTCCCTGTCCCCCCGCTCCGAGGCCAAGCTGT
TGTGTGTGAGGTTTGTGTGCCACGTGACTAAGACGCTGCTGTCGAGCTCG
GCCACTAATAATAGCGCTACTTCCGGGAAGGCAGCGGCAAATAATCCTGA
GGTCGCTCGAGAGGTGCGTCGGTGGCTCCAGTCGCTACCCGAGCTGCTGT
GTATCTGGGAAGCGGAGTTCCCCGCGAGCTCGGCGGCGTCTATTCGATCC
CTCGTCGAGGTGGCCAAGCTCGCCCCCGTGCCGTCTCCATTGTCTCCCGG
CGACGAAAAAGAAAAAAAGGCGAAAGACAAGCCGCCTGTGACGATCGCGG
CCGGAGGAGCGTGGGTCTTCGAGTCGTTGAATCTTCTTCGCTCCATAAAG
CCAGCGGTGCTGGAGGAGTTTTTTACCGGTCGAGGGTTTCCGTGCCTGCA
GGTGTCGGCCCAGATGGACGCCATATCGCTGCTCTACCACCTACCGTCGA
TTCCGGCCTGTGTGGTGTCGGCGCTCGCCTCGGTGTGCTCGGAGCCCGAT
GCACTTCGCGACGATGTTCGGTCGTTCGTGCTAGAGGTGAGCTGCTGAAC
AAGAGCTTCTGGCATCGTTCGGTAACTTCTTCGAGTCCCTGTCCCCCCGC
TCCGAGGCCAAGCTGTTGTGTGTGAGGTTTGTGTGCCACGTGACTAAGAC
GCTGCTGTCGAGCTCGGCCACTAATAATAGCGCTACTTCCGGGAAGGCAG
CGGCAAATAATCCTGAGGTCGCTCGAGAGGTGCGTCGGTGGCTCCAGTCG
CTACCCGAGCTGCTGTGTATCTGGGAAGCGGAGTTCCCCGCGAGCTCGGC
GGCGTCTATTCGATCCCTCGTCGAGGTGGCCAAGCTCGCCCCCGTGCCGT
CTCCATTGTCTCCCGGCGACGAAAAAGAAAAAAAGGCGAAAGACAAGCCG
CCTGTGACGATCGCGGCCGGAGGAGCGTGGGTCTTCGAGTCGTTGAATCT
TCTTCGCTCCATAAAGCCAGCGGTGCTGGAGGAGTTTTTTACCGGTCGAG
GGTTTCCGTGCCTGCAGGTGTCGGCCCAGATGGACGCCATATCGCTGCTC
TACCACCTACCGTCGATTCCGGCCTGTGTGGTGTCGGCGCTCGCCTCGGT
GTGCTCGGAGCCCGATGCACTTCGCGACGATGTTCGGTCGTTCGTGCTAG
AGGTGAGCTGCTGA
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