mRNA_H-elongata_contig62591.13831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62591.13831.1
Unique NamemRNA_H-elongata_contig62591.13831.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: D7FQE9_ECTSI (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE9_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.010e-22
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GSVGATVRMYIEKYEP+ SKQGLMT DVL PLVDIGLK+SRLE FTGR+SPTV+T
Sbjct:  564 GSVGATVRMYIEKYEPDPSKQGLMTADVLRPLVDIGLKMSRLEEFTGRSSPTVIT 618
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: A0A1J3DV68_NOCCA (Putative phosphoglucomutase, cytoplasmic 2 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DV68_NOCCA)

HSP 1 Score: 73.6 bits (179), Expect = 3.310e-15
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GAT+R+YIE+YE + SK G  + D L PLVD+ LK+S++++FTGR++PTVVT
Sbjct:   92 GSEGATIRLYIEQYEKDASKTGRDSQDALAPLVDVALKLSKMQDFTGRSAPTVVT 146
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: I3ST63_LOTJA (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3ST63_LOTJA)

HSP 1 Score: 73.2 bits (178), Expect = 1.560e-14
Identity = 31/55 (56.36%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GSVGAT+R+YIE+YE + SK G ++ + L PLV++ LK+S++E FTGR++PTV+T
Sbjct:  152 GSVGATIRLYIEQYEKDPSKIGRLSHEALAPLVEVALKLSKMEEFTGRSAPTVIT 206
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: A0A6P5EFZ3_ANACO (phosphoglucomutase, chloroplastic-like n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EFZ3_ANACO)

HSP 1 Score: 70.9 bits (172), Expect = 1.890e-14
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GATVR+YIE++EP+VSK  +     L PL+DI L +++L NFTGR  PTV+T
Sbjct:   63 GSAGATVRVYIEQFEPDVSKHDMDAQTALKPLIDIALSVAKLNNFTGREKPTVIT 117
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: W7TE68_9STRA (Phosphoglucomutase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TE68_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-14
Identity = 30/55 (54.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GAT+RMY+E+YE +VSKQG+ +++ L PL D  +K+++LE++TGR +PTV+T
Sbjct:  631 GSSGATIRMYLERYEADVSKQGMTSSEALKPLADFAIKLAKLEHYTGRRAPTVIT 685
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: C1MKX8_MICPC (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MKX8_MICPC)

HSP 1 Score: 73.9 bits (180), Expect = 5.050e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GATVRMYIE+YEP+V+KQ +   D L PL+++ L  S+L+ FTGR SPTV+T
Sbjct:  546 GSSGATVRMYIEQYEPDVTKQNIDAQDALAPLINVALDTSKLKEFTGRDSPTVIT 600
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: A0A453H7F4_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453H7F4_AEGTS)

HSP 1 Score: 72.8 bits (177), Expect = 6.440e-14
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GSVGAT+R+YIE+YE + SK G  ++D L PLVD+ LK S+++ +TGR++PTV+T
Sbjct:  234 GSVGATIRIYIEQYEKDSSKTGRASSDALSPLVDVALKFSKIKEYTGRSAPTVIT 288
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: A0A2N9EU79_FAGSY (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EU79_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 9.080e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GAT+R+YIE+YE + SK G  + D L PLV++ LK+S++E FTGRT+PTV+T
Sbjct:  390 GSEGATIRLYIEQYEKDSSKTGRDSQDALAPLVEVALKLSKMEEFTGRTAPTVIT 444
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: UPI000900AB74 (probable phosphoglucomutase, cytoplasmic 2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000900AB74)

HSP 1 Score: 73.2 bits (178), Expect = 9.340e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GATVR+YIE+YE + SK    T D L PLVD+ LK+S+L+ FTGR+SPTV+T
Sbjct:  444 GSEGATVRVYIEQYEKDASKISRDTQDALAPLVDVALKLSKLQEFTGRSSPTVIT 498
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BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Match: A0A7I8KV80_SPIIN (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KV80_SPIIN)

HSP 1 Score: 73.2 bits (178), Expect = 9.420e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GSVGATVRMYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT 165
            GS GAT+R+YIE+YE + SK G  + D L PLVD+ LK+S++E FTGR++PTV+T
Sbjct:  529 GSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVDVALKLSKMEEFTGRSAPTVIT 583
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62591.13831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE9_ECTSI2.010e-2285.45Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A1J3DV68_NOCCA3.310e-1558.18Putative phosphoglucomutase, cytoplasmic 2 (Fragme... [more]
I3ST63_LOTJA1.560e-1456.36Uncharacterized protein n=1 Tax=Lotus japonicus Ta... [more]
A0A6P5EFZ3_ANACO1.890e-1456.36phosphoglucomutase, chloroplastic-like n=1 Tax=Ana... [more]
W7TE68_9STRA3.700e-1454.55Phosphoglucomutase n=3 Tax=Monodopsidaceae TaxID=4... [more]
C1MKX8_MICPC5.050e-1460.00Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A453H7F4_AEGTS6.440e-1456.36Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A2N9EU79_FAGSY9.080e-1458.18Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
UPI000900AB749.340e-1461.82probable phosphoglucomutase, cytoplasmic 2 n=1 Tax... [more]
A0A7I8KV80_SPIIN9.420e-1458.18Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62591contigH-elongata_contig62591:1488..1655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7FQE9
KEGG rclassRC00408
KEGG koko:K01835
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.phosphoglucomutase activity
EggNOG OGsCOG0033@1,KOG0625@2759
EC5.4.2.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.5794406-UTR-H-elongata_contig62591:1487..15111622931008.5794406-UTR-H-elongata_contig62591:1487..1511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62591 1488..1511 +
1691679660.376323-UTR-H-elongata_contig62591:1487..15111691679660.376323-UTR-H-elongata_contig62591:1487..1511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62591 1488..1511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.5949953-CDS-H-elongata_contig62591:1511..16551622931008.5949953-CDS-H-elongata_contig62591:1511..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62591 1512..1655 +
1691679660.398811-CDS-H-elongata_contig62591:1511..16551691679660.398811-CDS-H-elongata_contig62591:1511..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62591 1512..1655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62591.13831.1prot_H-elongata_contig62591.13831.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62591 1512..1655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62591.13831.1

>prot_H-elongata_contig62591.13831.1 ID=prot_H-elongata_contig62591.13831.1|Name=mRNA_H-elongata_contig62591.13831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MYIEKYEPEVSKQGLMTTDVLLPLVDIGLKISRLENFTGRTSPTVVT*
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mRNA from alignment at H-elongata_contig62591:1488..1655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62591.13831.1 ID=mRNA_H-elongata_contig62591.13831.1|Name=mRNA_H-elongata_contig62591.13831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig62591:1488..1655+ (Himanthalia elongata Himel1 dioecious)
GGCTCGGTTGGTGCGACAGTTCGCATGTACATCGAGAAATACGAGCCGGA
GGTGTCGAAGCAAGGCCTTATGACCACTGACGTTCTACTACCCCTCGTGG
ACATCGGGCTTAAGATTTCCAGGCTGGAGAATTTCACCGGACGAACTTCC
CCCACGGTCGTCACCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig62591:1488..1655+

>mRNA_H-elongata_contig62591.13831.1 ID=mRNA_H-elongata_contig62591.13831.1|Name=mRNA_H-elongata_contig62591.13831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig62591:1488..1655+ (Himanthalia elongata Himel1 dioecious)
ATGTACATCGAGAAATACGAGCCGGAGGTGTCGAAGCAAGGCCTTATGAC
CACTGACGTTCTACTACCCCTCGTGGACATCGGGCTTAAGATTTCCAGGC
TGGAGAATTTCACCGGACGAACTTCCCCCACGGTCGTCACCTAAATGTAC
ATCGAGAAATACGAGCCGGAGGTGTCGAAGCAAGGCCTTATGACCACTGA
CGTTCTACTACCCCTCGTGGACATCGGGCTTAAGATTTCCAGGCTGGAGA
ATTTCACCGGACGAACTTCCCCCACGGTCGTCACCTAA
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