mRNA_H-elongata_contig62565.13828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62565.13828.1
Unique NamemRNA_H-elongata_contig62565.13828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62565.13828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62565contigH-elongata_contig62565:3005..3400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.3649147-CDS-H-elongata_contig62565:3004..34001622931008.3649147-CDS-H-elongata_contig62565:3004..3400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62565 3005..3400 +
1691679660.2862136-CDS-H-elongata_contig62565:3004..34001691679660.2862136-CDS-H-elongata_contig62565:3004..3400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62565 3005..3400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62565.13828.1prot_H-elongata_contig62565.13828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62565 3005..3400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62565.13828.1

>prot_H-elongata_contig62565.13828.1 ID=prot_H-elongata_contig62565.13828.1|Name=mRNA_H-elongata_contig62565.13828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MTLFWSYKAGQFKSNVFLATSSAVSGATWFHTAGRAGQDELAMVAYIILS
MISAAAGCERNWSLCIQIGGGQHARMAPETTLVYVRANIQLLHPEHMKNE
MDFAKPGVEWDNDFIPSELESENGSDNNSISE
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mRNA from alignment at H-elongata_contig62565:3005..3400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62565.13828.1 ID=mRNA_H-elongata_contig62565.13828.1|Name=mRNA_H-elongata_contig62565.13828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig62565:3005..3400+ (Himanthalia elongata Himel1 dioecious)
ATGACATTGTTCTGGTCGTACAAAGCTGGACAATTCAAGAGCAATGTTTT
CCTTGCAACATCGAGCGCGGTCAGTGGAGCTACGTGGTTCCACACTGCAG
GCAGGGCAGGGCAGGACGAACTTGCGATGGTTGCATACATCATTCTCTCT
ATGATTTCCGCTGCTGCAGGCTGCGAGCGCAACTGGAGCCTCTGTATCCA
GATTGGCGGCGGCCAGCACGCTCGTATGGCGCCTGAAACAACGCTGGTGT
ACGTCCGCGCAAATATTCAACTCCTGCATCCAGAGCATATGAAAAACGAG
ATGGATTTCGCGAAGCCTGGCGTCGAGTGGGACAACGATTTCATTCCGTC
GGAGTTAGAGTCAGAGAACGGGAGCGACAACAACAGCATCAGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig62565:3005..3400+

>mRNA_H-elongata_contig62565.13828.1 ID=mRNA_H-elongata_contig62565.13828.1|Name=mRNA_H-elongata_contig62565.13828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig62565:3005..3400+ (Himanthalia elongata Himel1 dioecious)
ATGACATTGTTCTGGTCGTACAAAGCTGGACAATTCAAGAGCAATGTTTT
CCTTGCAACATCGAGCGCGGTCAGTGGAGCTACGTGGTTCCACACTGCAG
GCAGGGCAGGGCAGGACGAACTTGCGATGGTTGCATACATCATTCTCTCT
ATGATTTCCGCTGCTGCAGGCTGCGAGCGCAACTGGAGCCTCTGTATCCA
GATTGGCGGCGGCCAGCACGCTCGTATGGCGCCTGAAACAACGCTGGTGT
ACGTCCGCGCAAATATTCAACTCCTGCATCCAGAGCATATGAAAAACGAG
ATGGATTTCGCGAAGCCTGGCGTCGAGTGGGACAACGATTTCATTCCGTC
GGAGTTAGAGTCAGAGAACGGGAGCGACAACAACAGCATCAGCGAGATGA
CATTGTTCTGGTCGTACAAAGCTGGACAATTCAAGAGCAATGTTTTCCTT
GCAACATCGAGCGCGGTCAGTGGAGCTACGTGGTTCCACACTGCAGGCAG
GGCAGGGCAGGACGAACTTGCGATGGTTGCATACATCATTCTCTCTATGA
TTTCCGCTGCTGCAGGCTGCGAGCGCAACTGGAGCCTCTGTATCCAGATT
GGCGGCGGCCAGCACGCTCGTATGGCGCCTGAAACAACGCTGGTGTACGT
CCGCGCAAATATTCAACTCCTGCATCCAGAGCATATGAAAAACGAGATGG
ATTTCGCGAAGCCTGGCGTCGAGTGGGACAACGATTTCATTCCGTCGGAG
TTAGAGTCAGAGAACGGGAGCGACAACAACAGCATCAGCGAG
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