mRNA_H-elongata_contig6253.13823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6253.13823.1
Unique NamemRNA_H-elongata_contig6253.13823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6253.13823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6253contigH-elongata_contig6253:5526..6022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size488
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6253.13823.1prot_H-elongata_contig6253.13823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6253 5645..5956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.1911576-UTR-H-elongata_contig6253:5525..56441622931007.1911576-UTR-H-elongata_contig6253:5525..5644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6253 5526..5644 +
1691679659.8013363-UTR-H-elongata_contig6253:5525..56441691679659.8013363-UTR-H-elongata_contig6253:5525..5644Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6253 5526..5644 +
1622931007.247893-UTR-H-elongata_contig6253:5956..60221622931007.247893-UTR-H-elongata_contig6253:5956..6022Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6253 5957..6022 +
1691679659.8312843-UTR-H-elongata_contig6253:5956..60221691679659.8312843-UTR-H-elongata_contig6253:5956..6022Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6253 5957..6022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.213154-CDS-H-elongata_contig6253:5644..58361622931007.213154-CDS-H-elongata_contig6253:5644..5836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6253 5645..5836 +
1691679659.8111315-CDS-H-elongata_contig6253:5644..58361691679659.8111315-CDS-H-elongata_contig6253:5644..5836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6253 5645..5836 +
1622931007.2306736-CDS-H-elongata_contig6253:5845..59561622931007.2306736-CDS-H-elongata_contig6253:5845..5956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6253 5846..5956 +
1691679659.820561-CDS-H-elongata_contig6253:5845..59561691679659.820561-CDS-H-elongata_contig6253:5845..5956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6253 5846..5956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6253.13823.1

>prot_H-elongata_contig6253.13823.1 ID=prot_H-elongata_contig6253.13823.1|Name=mRNA_H-elongata_contig6253.13823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MNGNVGSTELQKYNITVQNRGGLCAGKHRGILSKAAILLIMCMCGDNCQS
DVVWRKLPGEIEKHTCTKQTIEFSTSTAHLPEQRHITSGRHRQGEEERQP
*
back to top

mRNA from alignment at H-elongata_contig6253:5526..6022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6253.13823.1 ID=mRNA_H-elongata_contig6253.13823.1|Name=mRNA_H-elongata_contig6253.13823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig6253:5526..6022+ (Himanthalia elongata Himel1 dioecious)
GCCAGGGAGAATTCCACCCCAAGGCTCTGGGTCCGTGTCAAGGGGTAGGG
GGGGGGGGGTGGTTAAAGCGCAGGCGTTATGGCATTTTCGTAGACAAGAG
GGATCACCTCTCCGTTTTAATGAACGGCAATGTGGGAAGTACGGAATTGC
AAAAATACAACATTACTGTACAGAACAGAGGGGGGTTGTGTGCTGGCAAA
CACCGTGGAATCCTCTCCAAGGCGGCGATTCTCCTCATAATGTGCATGTG
TGGAGATAATTGTCAATCTGACGTGGTCTGGAGGAAACTACCAGGGGAAA
TCGAAAAACACGCAGGACAGACATGTACAAAACAAACAATTGAATTTTCC
ACTTCTACGGCACACCTGCCCGAGCAGAGGCACATCACGAGTGGGCGACA
TAGGCAGGGGGAGGAGGAAAGGCAACCGTAGGAATGCGGTTAGGGCCAAG
AACGGGTCTCATAAGCGTCTCTCGCCTGCGCCATTCCTCGGAACATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6253:5526..6022+

>mRNA_H-elongata_contig6253.13823.1 ID=mRNA_H-elongata_contig6253.13823.1|Name=mRNA_H-elongata_contig6253.13823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6253:5526..6022+ (Himanthalia elongata Himel1 dioecious)
ATGAACGGCAATGTGGGAAGTACGGAATTGCAAAAATACAACATTACTGT
ACAGAACAGAGGGGGGTTGTGTGCTGGCAAACACCGTGGAATCCTCTCCA
AGGCGGCGATTCTCCTCATAATGTGCATGTGTGGAGATAATTGTCAATCT
GACGTGGTCTGGAGGAAACTACCAGGGGAAATCGAAAAACACATGAACGG
CAATGTGGGAAGTACGGAATTGCAAAAATACAACATTACTGTACAGAACA
GAGGGGGGTTGTGTGCTGGCAAACACCGTGGAATCCTCTCCAAGGCGGCG
ATTCTCCTCATAATGTGCATGTGTGGAGATAATTGTCAATCTGACGTGGT
CTGGAGGAAACTACCAGGGGAAATCGAAAAACACACATGTACAAAACAAA
CAATTGAATTTTCCACTTCTACGGCACACCTGCCCGAGCAGAGGCACATC
ACGAGTGGGCGACATAGGCAGGGGGAGGAGGAAAGGCAACCGTAGACATG
TACAAAACAAACAATTGAATTTTCCACTTCTACGGCACACCTGCCCGAGC
AGAGGCACATCACGAGTGGGCGACATAGGCAGGGGGAGGAGGAAAGGCAA
CCGTAG
back to top