mRNA_H-elongata_contig6248.13819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6248.13819.1
Unique NamemRNA_H-elongata_contig6248.13819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6248.13819.1 vs. uniprot
Match: D7FII9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII9_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 1.370e-96
Identity = 153/231 (66.23%), Postives = 181/231 (78.35%), Query Frame = 1 
Query:  172 GDMSEADDAPELTKEFYEEVAMRWNTTVEGAMEVEKDIQFDK--------AIYDELRTRRDYGFEQDLGLELERRNITTKAEVAKIVEKGLEALPGVTSGSTFTPSSELTPREVVNSVLEALKNNDNPYRNHGVEVFIRFLSPSSAMKGVEMEGVARYLGENRNRALMHWDAIAYPRPLTLSGGEKKNKAFQPLKLQDTMTGSWHSVSVYMTLDAKTNHWLIESIIMKGDL 840
            G   E DD  ELTK FY E+A R   T +G  +  ++   D+           DELR RRD+GFEQDLGLELE+RNIT +AE  KI++ GLE +PGVTS +TF PSSELTPREVV SVLEALKNND PY NHGVEVFIRFL+PSSAM GVEM GVARYL ENRNRA MHW+ +A+PRPLT+SGG K+NKAFQP+KL+DTMTG+WHSVSVY+TLDA++N WLIES I+KG++
Sbjct:   83 GGAEEEDDTLELTKGFYSEIAARLGKTAQGQPQDSQETAKDEDSGSXXXXXXXDELRARRDFGFEQDLGLELEKRNITKEAEAKKIIDAGLEQMPGVTSSATFLPSSELTPREVVTSVLEALKNNDQPYHNHGVEVFIRFLAPSSAMHGVEMSGVARYLAENRNRAFMHWNTMAFPRPLTVSGGAKQNKAFQPVKLRDTMTGAWHSVSVYLTLDARSNCWLIESCIVKGEV 313
[Close]
BLAST of mRNA_H-elongata_contig6248.13819.1 vs. uniprot
Match: A0A7R9YD20_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD20_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.260e-12
Identity = 68/232 (29.31%), Postives = 111/232 (47.84%), Query Frame = 1 
Query:  202 ELTKEFYEEVAMRWNTTVEGAMEVEKDIQFDKAIYDELRTRRDYGFEQDLGL----ELERRNIT----TKAEVAKIVEKGLEA--LPGVTSGST------FTPSSELTPREVVNSVLEALKNNDNPYRNHGVEVFIRFLSPSSAMKGVEMEGVARY---LGENRNRALMHWDAIAYPRPLTLSGGEKKNKAFQPLKLQDTMTGSWHSVSVYMTLDAKTNH----WLIESIIM 828
            + T+EF+E V  R      G +  EKDI      Y+ LR R  +G E++        +E +N+T       E+ K   + +E       T+G         +P   LTP  VV S+L+A++ ND+PY NHG+EV  RF S +S+    +     +Y   + ++    L+ WDAI + +PL  +G     KA Q ++L+   +  W  V+V   L  +T      WL++S ++
Sbjct:   54 DFTREFFESVKEREG----GQLTEEKDI------YNALRERMGFGVEEEFARVRQQRIEGKNVTGDLDASEELLKATLRAMEQNIAENATAGQLPDIKLPTSPDPALTPGLVVMSILQAMRCNDSPYENHGIEVLTRFTSSASSATDTDEPSFRKYCDFIPKSEYGILLKWDAIRF-KPLEKAG----KKALQKIQLRLADSNEW--VTVKFALSERTTFLGETWLLDSFLI 268
[Close]
BLAST of mRNA_H-elongata_contig6248.13819.1 vs. uniprot
Match: A0A7S4ALD3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALD3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-5
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 1 
Query:  451 TFTPSSELTPREVVNSVLEALKNNDNPYRNHGVEVFIRFLSPSSAMK---GVEMEGVARYLGENRNRALM-HWDAIAYPRPLTLSGGEKKNKAFQPLKLQDTMTGSWHSVSVYMTL-----DAKTNHWLIESIIMK 831
            T  P ++LT  EVV  VL ALKNNDNPY N GVE+   + SP S +K   G+       +L E   +AL  H +A       +  G     K F   +LQ     S   +SV   L     D     WLI+SI+++
Sbjct:  190 TTVPDADLTAGEVVLLVLTALKNNDNPYVNKGVEILFGYSSPGSQIKQEEGLTPAEYGEFLKETEYKALFEHLEATIEKGEYSFEG----KKGFFTARLQTGPAPS-DCISVNFILSGSSPDDDDGAWLIDSILIR 320
[Close]
BLAST of mRNA_H-elongata_contig6248.13819.1 vs. uniprot
Match: A0A7S0K9M8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9M8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.810e-5
Identity = 41/130 (31.54%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:  460 PSSELTPREVVNSVLEALKNNDNPYRNHGVEVFIRFLSPSSAMKGVEMEGVARYLGE------NRNRALMHWDAIAYPRPLTLSGGEKKNKAFQPLKLQDTMTGSWHSVSVYMTLDAKTNHWLIESIIMK 831
            P +ELT  EVV  VLEAL+NNDNP  N GVE+   + S +S +  +E        GE      ++   L H D +      +    + K +AF  ++L D M  +  SV+  ++  +  + WLI+S +++
Sbjct:  244 PDAELTAGEVVTVVLEALRNNDNPSTNRGVEILFAYSSSASILADLERAPSVEEYGEMLRTSPDQKILLEHVDVLFDKADYS----QDKKRAFITVRLMD-MEKTLTSVNFILSTGSSDDCWLIDSHLVR 368
[Close]
BLAST of mRNA_H-elongata_contig6248.13819.1 vs. uniprot
Match: A0A7S2NRG0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NRG0_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 7.730e-5
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  475 TPREVVNSVLEALKNNDNPYRNHGVEVFIRFLSPSSAMKGVEMEGVARYLGENRNRALMHWDAI 666
            +PR+VV SV++AL+N D PY  HG EV +RF SP++    +  +  A YL E     L  WD +
Sbjct:  314 SPRQVVESVMKALRNVDEPYPLHGAEVAVRFCSPTNKASQLSPQAFATYLNEPWYAILTEWDEM 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6248.13819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FII9_ECTSI1.370e-9666.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YD20_9STRA2.260e-1229.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4ALD3_9STRA1.300e-535.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0K9M8_9STRA2.810e-531.54Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S2NRG0_9EUKA7.730e-542.19Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6248contigH-elongata_contig6248:265..4511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000440.1
Exons7
Model size1404
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.862175-UTR-H-elongata_contig6248:264..2971622931006.862175-UTR-H-elongata_contig6248:264..297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6248 265..297 +
1691679659.6619613-UTR-H-elongata_contig6248:264..2971691679659.6619613-UTR-H-elongata_contig6248:264..297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6248 265..297 +
1622931007.0295913-UTR-H-elongata_contig6248:3950..45111622931007.0295913-UTR-H-elongata_contig6248:3950..4511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6248 3951..4511 +
1691679659.7438533-UTR-H-elongata_contig6248:3950..45111691679659.7438533-UTR-H-elongata_contig6248:3950..4511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6248 3951..4511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.879336-CDS-H-elongata_contig6248:297..4921622931006.879336-CDS-H-elongata_contig6248:297..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 298..492 +
1691679659.6711807-CDS-H-elongata_contig6248:297..4921691679659.6711807-CDS-H-elongata_contig6248:297..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 298..492 +
1622931006.8973598-CDS-H-elongata_contig6248:1041..11581622931006.8973598-CDS-H-elongata_contig6248:1041..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 1042..1158 +
1691679659.6804044-CDS-H-elongata_contig6248:1041..11581691679659.6804044-CDS-H-elongata_contig6248:1041..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 1042..1158 +
1622931006.9122431-CDS-H-elongata_contig6248:1396..15371622931006.9122431-CDS-H-elongata_contig6248:1396..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 1397..1537 +
1691679659.6891625-CDS-H-elongata_contig6248:1396..15371691679659.6891625-CDS-H-elongata_contig6248:1396..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 1397..1537 +
1622931006.9325414-CDS-H-elongata_contig6248:1824..18901622931006.9325414-CDS-H-elongata_contig6248:1824..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 1825..1890 +
1691679659.7006571-CDS-H-elongata_contig6248:1824..18901691679659.7006571-CDS-H-elongata_contig6248:1824..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 1825..1890 +
1622931006.948471-CDS-H-elongata_contig6248:2845..29701622931006.948471-CDS-H-elongata_contig6248:2845..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 2846..2970 +
1691679659.7154853-CDS-H-elongata_contig6248:2845..29701691679659.7154853-CDS-H-elongata_contig6248:2845..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 2846..2970 +
1622931006.978572-CDS-H-elongata_contig6248:3329..33951622931006.978572-CDS-H-elongata_contig6248:3329..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 3330..3395 +
1691679659.7264807-CDS-H-elongata_contig6248:3329..33951691679659.7264807-CDS-H-elongata_contig6248:3329..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 3330..3395 +
1622931007.0061743-CDS-H-elongata_contig6248:3850..39501622931007.0061743-CDS-H-elongata_contig6248:3850..3950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 3851..3950 +
1691679659.7343435-CDS-H-elongata_contig6248:3850..39501691679659.7343435-CDS-H-elongata_contig6248:3850..3950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6248 3851..3950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6248.13819.1prot_H-elongata_contig6248.13819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6248 298..3950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6248.13819.1

>prot_H-elongata_contig6248.13819.1 ID=prot_H-elongata_contig6248.13819.1|Name=mRNA_H-elongata_contig6248.13819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
MAGLSHQRHAGLVRRRSFTRSASDGEADNILGESSKSEEQEETAWRGDMS
EADDAPELTKEFYEEVAMRWNTTVEGAMEVEKDIQFDKAIYDELRTRRDY
GFEQDLGLELERRNITTKAEVAKIVEKGLEALPGVTSGSTFTPSSELTPR
EVVNSVLEALKNNDNPYRNHGVEVFIRFLSPSSAMKGVEMEGVARYLGEN
RNRALMHWDAIAYPRPLTLSGGEKKNKAFQPLKLQDTMTGSWHSVSVYMT
LDAKTNHWLIESIIMKGDL*
back to top

mRNA from alignment at H-elongata_contig6248:265..4511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6248.13819.1 ID=mRNA_H-elongata_contig6248.13819.1|Name=mRNA_H-elongata_contig6248.13819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4247bp|location=Sequence derived from alignment at H-elongata_contig6248:265..4511+ (Himanthalia elongata Himel1 dioecious)
CGCAGCGTTCGAGCTACTACCGAATGGCGAAACATGGCGGGTTTAAGTCA
TCAAAGACACGCTGGCCTGGTGAGGCGGCGCTCGTTCACACGGAGCGCTT
CGGACGGAGAAGCGGACAACATCCTTGGAGAATCGTCTAAGAGTGAAGAG
CAAGAAGAGACTGCGTGGAGAGGGGATATGTCAGAGGCGGATGATGCTCC
AGAGCTCACCAAGGAGTTCTACGAAGAGGTCCGGTATTATTCGTTAAAAG
TTTAAATACATTTCAACCATTGTCCGTAGAACAAGTAACACGAACATCAT
TATATCGAATCCTGTGAGCGTTTTTTTGTACAAGGTTGCTGTTTACCGTT
ATTGTTGTACGATGATATTATTAGTGCCTGTGCATATTTTTTTGTCGCAT
ATTCTCATCCGCCACGCCCTTTTATTCGACATCATTGCTTTGGTATTTCC
AGATATTGTGTTCCAGTCTCCATCCAAGTATGTCCCATCGGCACTCTTTT
TGTTCTAAGTACAGTACAGCGTCATGAAAATCGCTGAAGGACAGTACTTT
GCACTTTGAGAGCTAGCGCTTCGACAGCTCTCATTCAAAAGCATCCGGCT
GACAACGGTGAACCCACAAGCGAATTACTAATGGGGAAGAGCCACCACAC
ACCGTGCGCAAGATCTACTGATTGACTCGTGCGATCTCGACGCCGCTTTT
TTGTTTCTGGTTTTCCCTCACCGCTCTCACTGCCCTCCCCGCACTGATTG
CACCCTTACGGAACGTGTTATTGATAGGTGGCTATGCGCTGGAATACAAC
GGTGGAAGGAGCAATGGAAGTAGAGAAAGACATACAGTTTGATAAGGCTA
TTTACGACGAGCTTAGGACACGGCGGGACTACGGCTTTGAGCAGGTGGGT
ATAATCACGGTAAAAAAAGCTGACAGTTTGTCCCGATCATGATGTTGGCT
AATCCACAAAAGCAAAACCTGTAACTCCTTGACACGTACTATACGTTCGT
CGATCGCGTTGCTCTTTGTAGTGTTTGGCCTCGATCTTAACTGTCTTCAC
TATAACTGAGAAGTGTAATGTAAGCCCCACCGCCAAGCCCCACCGCCTAA
TTTATTGGCATACGCGTCTGATCGTCGATCAGGACCTTGGCCTGGAGCTG
GAGAGGCGCAACATCACCACCAAGGCAGAGGTCGCAAAGATCGTCGAAAA
GGGCCTTGAGGCTCTGCCAGGGGTAACAAGTGGCTCTACGTTCACGCCCA
GCTCAGAACTGACGCCACGAGAGGTTAGTAGACATTTTTCGTATCCCCAA
ATATTTCAAGCACCCCTATCCTTCTGTACGCACTATGGCCCAACATCGCG
TCGACGTCATGACTGGTGTTGCTCCATGCGAAATTGCCTCATGAAAAGCG
AAATGGTTAGGAGAGTCCCGGCATGTAAGGGAAGTGATTTGAGTGAAAGC
TTCACGATCATCGCCCCACTGAATGCCGAATGACGCCAAACTATTAAATA
CTAAGCTGGCCCAACGTGATACCTCGACCGTTTCATACCCCTATCATGAC
CGCTGCTCAGGTGGTGAACTCGGTGCTTGAGGCCCTGAAAAATAACGACA
ACCCTTATCGCAATCACGGCGTAGAGGTGGGCAGACAATCAACCAACTTC
CATATGCCATATGCAGTATAAAATGTATTTGTACGAAACGGTGTTCCGCA
CAATTATTCCCTTTGGACATACGCCAAAGATCATCTAAAGTTGAAAGAAG
CGCTGCTTTCCATAAAAAACGAGTAAAATAAGACCATTTCATCTACTAGT
ATATTTTTGAAAGACCTTAATCTCGTAGATGTGTTAGTCCGTAATCCGAA
ACCTACGCAGTGGCAAGATTGCCCCAGAGAATGTTCCAGAGAATGGTCCC
AGAGAAAACAGGCGGCCGTATTGGTTGAGAAGAGACCCCAACGACCGTCC
CGTAGAGATAGTATGTCGTAACTACTTTCAGCGACAGTGGCTAGAAGTGA
GGAAACTGGTCAGAGCCTAAACGAACCTTGCAAAGCCCACGAAACTACTG
GGCCTCGGGGCGGTCAATCAGGGTTCCTTGTTCATGACTGCGTAAAACTG
ACAATAGTATAGCGGGACTGTCATGAAAATTTCCATACGCCCCCGTGGAA
ACATCGATGCTCCATAATTCGTGGACCTCCCAAGATCCGTTCAGGCTCTC
TCCCGAGGAAACCGGGAGGCGGGAAAGGTTGGGAAGTTGCGGTTCATTCG
TAACAGTCCTGTCTTTTCGTGACGTCATAGTAAAGATATGAAACGATATA
ATCTAAACAAGGCTGGCACGACTGTCATGATATTTCCGGCACGCCTCTGT
GGAAACGCTGATGCTCCATAGTTTCGTGGACCTCGCGAGGTCCGTTTAGG
CTCTCCGGTTGGGAAGTTTCAGTTCATTCGTAACAGTCATGTCTTTTCGT
GACGTCATAGTATGAGGAAGTGTAAAGGTATGAAATGGGATAATCTGAAC
AACGCTGGACGGATGCGGAAATTGGCTCACGAATCAGTTGTCACTTCCGC
GTGTCAAAACTCCACCTCCACCTCCACGCAGGTGTTCATCCGCTTCCTGT
CGCCGTCGTCGGCCATGAAGGGCGTAGAGATGGAGGGCGTAGCGCGCTAC
CTGGGAGAGAATCGAAACCGAGCTCTTATGCATTGGGATGCCATCGCTTA
CCCAAGGTATTTCCCGGCGGATGTATCAGCCCTATTGCAAGGGTAGTGGT
GTAGTGGTTTTCAGCCGTGTCCCATAATACAGTGTCGTAGAGTGTCGCCA
AATTTGTTTGTGTTTTGTCTAGATGGACCTTAGAGTTGCTAGAACTACTC
CGTTTGCAAGCTTGCACGCGCTGAATTATTTATTATGGAGTTGTATTAGG
AAGAAAAAAGTAGTCAGAGAGACTTGCAATGCGTACCGACCTCGTTGAAA
ACGACGCCACGTACATGATACGTGCCGAATCCATGCACAAATCAGTTTAT
TTATTGTCTTAGGTATGCTGGAATGGTTTATGCTCGGTAAATCGGTCCAT
TGGTCATTCGTGCAGACCTTTAACTTTATCCGGCGGGGAAAAGAAGAACA
AGGCCTTCCAGCCTCTCAAACTCCAGGACACGTGAGCAAACAGCTTTCGA
ATTTTGACCGGTTACATCTGGTGTTGGTGTTCATCTTCGACGGACAAGGC
GCTACAGCTGCCGCTGGCGGTGATAAAACCACTCGGTGATCACGCCAGTC
ATGTACAAGTATTGCTTACAATTTTTATACCTACGACAAAGATAGTCCCA
AACCATGCATTTTGACTCGCGCCTCTTTCGTAAAGCTCGAGCGCCAACTT
GGCTCCCTTAAAGTTTTAATTTTTGTACAGCCTTGGCAAGCCGCGTCATC
TTGTTCCCTACCAATTGCAGCTTTGTTTTCACTTGAAATATATCTACTCG
AGGCTTCCGTGTGGTTTCTTTGCAGAAGTCTCACGATACGCCCCTGATGT
CTCACGTTCCCGCCTAACCTTTTTTCCCCAATGGCGTTCCTCGCCCTTCC
CGTTCGGTATCTTTCGTTGGCCATTTTGATTGCTAGCATGACCGGAAGCT
GGCATTCCGTAAGTGTGTACATGACTCTCGACGCGAAAACCAACCATTGG
CTTATCGAGTCCATCATAATGAAGGGTGATTTGTGAAGCATTGAAAGAGT
GATGCATGCGGCTCTCGCGATAAAGATTAAAGACTGAAGACATACAAGCC
CTATGTAGGAGAGGGAGAGAGAGAGGAGAACATCGATGCAGCGAGTATAG
GAAACAATCAAGCTGCGCAAGCCTTCGGTGGCCACCTTGTGCCATTGCTA
TTGTACCCAGATATTATGTGATATGTGAAATGTGAGACGCCGGGGCTCTG
GCTTGGAGTTGTTTGTTTTCTCCGTCTTCCAGGCGTAAACTACTCTCATG
CCTACTTTTATGAAATATTTCATAACTGATTTCATAAATATTTTCATAAC
TGTGAACGATCCCCGATTATCGCATGACCTTCAGCAGTACTAGTGCACTA
GAATTCTTGTTGAGGTGTGAATTTGCCTTGGGCAGTCTGGTTCGATGTGA
TAAGCTAGATGTTCGATATGAAAGGGTTTAGACGTCCACAGAGGATTCTG
CGACGGGCAGCGTTTGGTGTGGAACCAAGGACATTTTCTTCGAGCACTCG
ATAGCTTCGACGGCTCAGTGGGGATGGAAGTTGATTGGATGAGTGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6248:265..4511+

>mRNA_H-elongata_contig6248.13819.1 ID=mRNA_H-elongata_contig6248.13819.1|Name=mRNA_H-elongata_contig6248.13819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig6248:265..4511+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGGTTTAAGTCATCAAAGACACGCTGGCCTGGTGAGGCGGCGCTC
GTTCACACGGAGCGCTTCGGACGGAGAAGCGGACAACATCCTTGGAGAAT
CGTCTAAGAGTGAAGAGCAAGAAGAGACTGCGTGGAGAGGGGATATGTCA
GAGGCGGATGATGCTCCAGAGCTCACCAAGGAGTTCTACGAAGAGATGGC
GGGTTTAAGTCATCAAAGACACGCTGGCCTGGTGAGGCGGCGCTCGTTCA
CACGGAGCGCTTCGGACGGAGAAGCGGACAACATCCTTGGAGAATCGTCT
AAGAGTGAAGAGCAAGAAGAGACTGCGTGGAGAGGGGATATGTCAGAGGC
GGATGATGCTCCAGAGCTCACCAAGGAGTTCTACGAAGAGGTGGCTATGC
GCTGGAATACAACGGTGGAAGGAGCAATGGAAGTAGAGAAAGACATACAG
TTTGATAAGGCTATTTACGACGAGCTTAGGACACGGCGGGACTACGGCTT
TGAGCAGGTGGCTATGCGCTGGAATACAACGGTGGAAGGAGCAATGGAAG
TAGAGAAAGACATACAGTTTGATAAGGCTATTTACGACGAGCTTAGGACA
CGGCGGGACTACGGCTTTGAGCAGGACCTTGGCCTGGAGCTGGAGAGGCG
CAACATCACCACCAAGGCAGAGGTCGCAAAGATCGTCGAAAAGGGCCTTG
AGGCTCTGCCAGGGGTAACAAGTGGCTCTACGTTCACGCCCAGCTCAGAA
CTGACGCCACGAGAGGACCTTGGCCTGGAGCTGGAGAGGCGCAACATCAC
CACCAAGGCAGAGGTCGCAAAGATCGTCGAAAAGGGCCTTGAGGCTCTGC
CAGGGGTAACAAGTGGCTCTACGTTCACGCCCAGCTCAGAACTGACGCCA
CGAGAGGTGGTGAACTCGGTGCTTGAGGCCCTGAAAAATAACGACAACCC
TTATCGCAATCACGGCGTAGAGGTGGTGAACTCGGTGCTTGAGGCCCTGA
AAAATAACGACAACCCTTATCGCAATCACGGCGTAGAGGTGTTCATCCGC
TTCCTGTCGCCGTCGTCGGCCATGAAGGGCGTAGAGATGGAGGGCGTAGC
GCGCTACCTGGGAGAGAATCGAAACCGAGCTCTTATGCATTGGGATGCCA
TCGCTTACCCAAGGTGTTCATCCGCTTCCTGTCGCCGTCGTCGGCCATGA
AGGGCGTAGAGATGGAGGGCGTAGCGCGCTACCTGGGAGAGAATCGAAAC
CGAGCTCTTATGCATTGGGATGCCATCGCTTACCCAAGACCTTTAACTTT
ATCCGGCGGGGAAAAGAAGAACAAGGCCTTCCAGCCTCTCAAACTCCAGG
ACACACCTTTAACTTTATCCGGCGGGGAAAAGAAGAACAAGGCCTTCCAG
CCTCTCAAACTCCAGGACACCATGACCGGAAGCTGGCATTCCGTAAGTGT
GTACATGACTCTCGACGCGAAAACCAACCATTGGCTTATCGAGTCCATCA
TAATGAAGGGTGATTTGTGACATGACCGGAAGCTGGCATTCCGTAAGTGT
GTACATGACTCTCGACGCGAAAACCAACCATTGGCTTATCGAGTCCATCA
TAATGAAGGGTGATTTGTGA
back to top