mRNA_H-elongata_contig62454.13818.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62454.13818.1
Unique NamemRNA_H-elongata_contig62454.13818.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 4.310e-36
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 2
Query:    2 TQRGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            T R  +   L  + + EGVL WWK  E SYPLLAR ARVVF APAS  V ERD  +AGRMMTSSRS+ D KY++M LFLHGN+DL+PE I ELPADGVNG Q+KIPGRL
Sbjct:  631 TLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRL 739          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.710e-34
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 2
Query:    8 RGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            R +  G+L   L+ E VL WWK+   +YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSRS+ D+KY++M +FLHGNLDLIPEDI +L       A++KIPGRL
Sbjct:  591 RAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRL 694          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.030e-34
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 2
Query:    2 TQRGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            T RG+ AGTLT +L+ EGVL WWK     YPLLARAARVVFGAPAS+AVLERDF++A  MM SSRS+ D KY++M LFLHGNLDLIPE I EL  + V   Q+KIPGRL
Sbjct:  529 TLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRL 634          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.750e-33
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 2
Query:    8 RGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            R +  G+L A L  E VL WWK+   +YPLLAR ARVV GA AS+AVLE DFSNAGRMMTSSRS+ D+KY++M LFLHGNLDLIPEDI +L  + V  A++KIPGRL
Sbjct:  364 RAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRL 467          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.560e-32
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 2
Query:   38 ELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDI 271
            EL+ + VL WWK   SSYPLLARAARVVFGAPAS+AVLE DF +AGR+MTSSRS+TD KY++M LFLHGNLDLIPEDI
Sbjct:   31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.450e-31
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 2
Query:    8 RGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            R +  G L A L  E VL WWK+   +YPLLAR ARVVFGAPAS+AVLE  FSNAGRM TSSRS+ D+ Y++M +FLHGNL+LIPEDI +L  + V  A++K PGRL
Sbjct:  127 RAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRL 230          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.230e-29
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 2
Query:   89 YPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTD-TKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSR + D T Y++M LFLHGNLDLIPEDI +L  + V  A+SKIPGRL
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRL 83          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.960e-24
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   86 SYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKY-LDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            +Y LL   ARVVFGAPAS+A LERDFSNAGRMMTSSRS+ D+KY ++M LFLHGNLDLIPEDI  L  + V  A++  PGRL
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRL 83          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.320e-20
Identity = 52/98 (53.06%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   38 ELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSK-IPGRL 328
            EL+ E VL WWK   SSYPLLARA RVVFGAPAS+A                       Y++M LFLHGNLDLIP+DI  LP DG + A +K +PGRL
Sbjct:   31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRL 105          
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 9.930e-20
Identity = 56/109 (51.38%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    2 TQRGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
            T RG+ AG+LT +L  EGVL WW+  E SYPLLARAARV FGAPA           AG          D KY++M LFLHG LDL PE I EL  + ++   +KIPGRL
Sbjct:  328 TLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIH---AKIPGRL 412          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LFP4_ECTSI4.310e-3666.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.710e-3465.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI2.030e-3467.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE7.750e-3365.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE1.560e-3276.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE2.450e-3161.68Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE8.230e-2976.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE5.960e-2468.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE2.320e-2053.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE9.930e-2051.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62454contigH-elongata_contig62454:2351..2681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.8071575-CDS-H-elongata_contig62454:2350..26801622931006.8071575-CDS-H-elongata_contig62454:2350..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62454 2351..2680 +
1691679659.6520448-CDS-H-elongata_contig62454:2350..26801691679659.6520448-CDS-H-elongata_contig62454:2350..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62454 2351..2680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62454.13818.1prot_H-elongata_contig62454.13818.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62454 2351..2680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62454.13818.1

>prot_H-elongata_contig62454.13818.1 ID=prot_H-elongata_contig62454.13818.1|Name=mRNA_H-elongata_contig62454.13818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
DAEGSGGWHTDGRAELRGCAYVVEDMRELVPTPGPGSSCGVRSSSVVGGA
RARFQQCWAHDDVIEKLHRYQVPGHVSFSARQPGPYSRGYCRAASRRGQR
CAKQDSREVV
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mRNA from alignment at H-elongata_contig62454:2351..2681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62454.13818.1 ID=mRNA_H-elongata_contig62454.13818.1|Name=mRNA_H-elongata_contig62454.13818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=331bp|location=Sequence derived from alignment at H-elongata_contig62454:2351..2681+ (Himanthalia elongata Himel1 dioecious)
GACGCAGAGGGGTCTGGCGGCTGGCACACTGACGGCCGAGCTGAACTACG AGGGTGTGCTTATGTGGTGGAAGATATGAGAGAGCTCGTACCCACTCCTG GCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCT CGAGCGCGATTTCAGCAATGCTGGGCGCATGATGACGTCATCGAGAAGCT CCACCGATACCAAGTACCTGGACATGTTTCTTTTTCTGCACGGCAACCTG GACCTTATTCCCGAGGATATTGCAGAGCTGCCAGCCGACGGGGTCAACGG TGCGCAAAGCAAGATTCCCGGGAGGTTGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig62454:2351..2681+

>mRNA_H-elongata_contig62454.13818.1 ID=mRNA_H-elongata_contig62454.13818.1|Name=mRNA_H-elongata_contig62454.13818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig62454:2351..2681+ (Himanthalia elongata Himel1 dioecious)
GACGCAGAGGGGTCTGGCGGCTGGCACACTGACGGCCGAGCTGAACTACG
AGGGTGTGCTTATGTGGTGGAAGATATGAGAGAGCTCGTACCCACTCCTG
GCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCT
CGAGCGCGATTTCAGCAATGCTGGGCGCATGATGACGTCATCGAGAAGCT
CCACCGATACCAAGTACCTGGACATGTTTCTTTTTCTGCACGGCAACCTG
GACCTTATTCCCGAGGATATTGCAGAGCTGCCAGCCGACGGGGTCAACGG
TGCGCAAAGCAAGATTCCCGGGAGGTTGTCGACGCAGAGGGGTCTGGCGG
CTGGCACACTGACGGCCGAGCTGAACTACGAGGGTGTGCTTATGTGGTGG
AAGATATGAGAGAGCTCGTACCCACTCCTGGCCCGGGCAGCTCGTGTGGT
GTTCGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCGCGATTTCAGCAATG
CTGGGCGCATGATGACGTCATCGAGAAGCTCCACCGATACCAAGTACCTG
GACATGTTTCTTTTTCTGCACGGCAACCTGGACCTTATTCCCGAGGATAT
TGCAGAGCTGCCAGCCGACGGGGTCAACGGTGCGCAAAGCAAGATTCCCG
GGAGGTTGTC
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