mRNA_H-elongata_contig62454.13818.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 139 bits (350), Expect = 4.310e-36 Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 2
Query: 2 TQRGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
T R + L + + EGVL WWK E SYPLLAR ARVVF APAS V ERD +AGRMMTSSRS+ D KY++M LFLHGN+DL+PE I ELPADGVNG Q+KIPGRL
Sbjct: 631 TLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRL 739
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.710e-34 Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 2
Query: 8 RGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
R + G+L L+ E VL WWK+ +YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSRS+ D+KY++M +FLHGNLDLIPEDI +L A++KIPGRL
Sbjct: 591 RAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRL 694
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 134 bits (337), Expect = 2.030e-34 Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 2
Query: 2 TQRGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
T RG+ AGTLT +L+ EGVL WWK YPLLARAARVVFGAPAS+AVLERDF++A MM SSRS+ D KY++M LFLHGNLDLIPE I EL + V Q+KIPGRL
Sbjct: 529 TLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRL 634
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.750e-33 Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 2
Query: 8 RGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
R + G+L A L E VL WWK+ +YPLLAR ARVV GA AS+AVLE DFSNAGRMMTSSRS+ D+KY++M LFLHGNLDLIPEDI +L + V A++KIPGRL
Sbjct: 364 RAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRL 467
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.560e-32 Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 2
Query: 38 ELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDI 271
EL+ + VL WWK SSYPLLARAARVVFGAPAS+AVLE DF +AGR+MTSSRS+TD KY++M LFLHGNLDLIPEDI
Sbjct: 31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.450e-31 Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 2
Query: 8 RGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
R + G L A L E VL WWK+ +YPLLAR ARVVFGAPAS+AVLE FSNAGRM TSSRS+ D+ Y++M +FLHGNL+LIPEDI +L + V A++K PGRL
Sbjct: 127 RAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRL 230
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 109 bits (272), Expect = 8.230e-29 Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 2
Query: 89 YPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTD-TKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSR + D T Y++M LFLHGNLDLIPEDI +L + V A+SKIPGRL
Sbjct: 6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRL 83
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 5.960e-24 Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 2
Query: 86 SYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKY-LDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
+Y LL ARVVFGAPAS+A LERDFSNAGRMMTSSRS+ D+KY ++M LFLHGNLDLIPEDI L + V A++ PGRL
Sbjct: 5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRL 83
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.320e-20 Identity = 52/98 (53.06%), Postives = 60/98 (61.22%), Query Frame = 2
Query: 38 ELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSK-IPGRL 328
EL+ E VL WWK SSYPLLARA RVVFGAPAS+A Y++M LFLHGNLDLIP+DI LP DG + A +K +PGRL
Sbjct: 31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRL 105
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 9.930e-20 Identity = 56/109 (51.38%), Postives = 66/109 (60.55%), Query Frame = 2
Query: 2 TQRGLAAGTLTAELNYEGVLMWWKI*ESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDTKYLDMFLFLHGNLDLIPEDIAELPADGVNGAQSKIPGRL 328
T RG+ AG+LT +L EGVL WW+ E SYPLLARAARV FGAPA AG D KY++M LFLHG LDL PE I EL + ++ +KIPGRL
Sbjct: 328 TLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIH---AKIPGRL 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62454.13818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62454.13818.1 >prot_H-elongata_contig62454.13818.1 ID=prot_H-elongata_contig62454.13818.1|Name=mRNA_H-elongata_contig62454.13818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp DAEGSGGWHTDGRAELRGCAYVVEDMRELVPTPGPGSSCGVRSSSVVGGAback to top mRNA from alignment at H-elongata_contig62454:2351..2681+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62454.13818.1 ID=mRNA_H-elongata_contig62454.13818.1|Name=mRNA_H-elongata_contig62454.13818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=331bp|location=Sequence derived from alignment at H-elongata_contig62454:2351..2681+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62454:2351..2681+ >mRNA_H-elongata_contig62454.13818.1 ID=mRNA_H-elongata_contig62454.13818.1|Name=mRNA_H-elongata_contig62454.13818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig62454:2351..2681+ (Himanthalia elongata Himel1 dioecious)back to top |