mRNA_H-elongata_contig62445.13817.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: D7FJ10_ECTSI (VPS37 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ10_ECTSI) HSP 1 Score: 315 bits (807), Expect = 5.520e-103 Identity = 182/310 (58.71%), Postives = 217/310 (70.00%), Query Frame = 1
Query: 31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTTPPQA--------PMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDIRF 936
VLQLLS V+HPWVN YMQVVGHP+LHGWD T+PP+IGDIVAAVI EFGR ++SGR Q WG + TPP P+ G G +G H S++ + R PV HTPIP IP F L+ L+T++L RLL D+SARQALLL M +V MKDL+T+V KGNVETAR TL+KQ++A +LRE+GE+++ ELKALQTSYE KAH KNMGGTADQ+ILK+VK+ASK+ADTSSE +A DFLEKR+P QDFL+EFLKERQRYHMLAAKIECMKRDIRF
Sbjct: 75 VLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTSGRVQAST-VWGGPIAQEPSGTPPAVGAFGLGNPPVSYPAGRATGGAASAKGKAH--MTSTDPRTGGEVQTRRMRPPVH------HTPIPDIPDTFGELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKALQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSEQVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF 375
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A835YJX2_9STRA (VPS37 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX2_9STRA) HSP 1 Score: 148 bits (373), Expect = 8.950e-38 Identity = 116/338 (34.32%), Postives = 166/338 (49.11%), Query Frame = 1
Query: 31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRG--------------------------QDPPPSWGNEVRATGYTTPPQAPMGLAGGGLHIGM--------TDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKA--HERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDIRF 936
VLQLLS V HPWVN+YMQVVGHP+L W I IV +++E T S++G+ Q PSW + R +T PP+ P+G A G + G R G + +G G K + TPIP+IP++F L+ LT QL RL D A ++ M S GM++L ++ KGN E A++ + ES+R L +++R E+ AL+ A + G +AD V LK VK A+K AD SS+++A+ FL R +FLE F+ +RQRYH AA++EC+KR++ F
Sbjct: 88 VLQLLSTVDHPWVNEYMQVVGHPDLALWRGNAGKPISVIVKEIMIEL--SGGTASTAGQALPQQPSQRMPTNAASFAHPSTGPQQWQQQQPSWRPDERKPNWT-PPEGPIGAANGNSGGQFWRPQPSDGSQSGGGRVGGGAAQWSPSQVGAGGGGSSTDAKRVEEKHRTPIPAIPSRFAELDGLTEAQLRRLAGDGVALAQIVDGMASARGMRELLRDLAKGNAEVAKANM---ESSRKL----DELRDEITALKMELHEAAALNPVGVGAGASADHVTLKAVKEAAKDADQSSQAVADSFLAGRAGVGEFLEGFMAQRQRYHRCAARMECVKREMGF 415
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A7S2C1W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1W9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.220e-17 Identity = 53/160 (33.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query: 436 PIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHER-NKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIE 912
P+P IP +F+ +E +T Q+ RLL DD A A L+ M SV M+DL+ +V + N + A+STL ++ +LR + ++LEL+ L+ +++ KA + N + ++D +L ++ A +VA+ S+ +A++F + A F++++L R YH A +E
Sbjct: 60 PVPPIPDRFEEIEAMTLDQVERLLRDDVAFSAHLMNMDSVKTMRDLREQVIEENAKIAQSTLQHRDELEVLRAETLTLQLELQQLKEAFDAKAQVQINADAHRSSDNAVLNTIRLAVEVAEEESDDVASEFNNGDMTADAFVKKYLPLRSTYHQRNAALE 219
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A6G0X4B8_9STRA (VPS37 C-terminal domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4B8_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.020e-15 Identity = 79/301 (26.25%), Postives = 132/301 (43.85%), Query Frame = 1
Query: 31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTT-----PPQAPMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQ--DHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIE 912
V+Q S+V H W++ +VVGH +L W A IG IV+ ++ EF R P P N R + + PPQA + G+ S+ Q S +R+ HT P+IP F L+ L+ QL +L+ D + +A + M SV L ++ +GN E A S L+ + S L+ + E+++ +L Q K ++N+ M + ++ +V A+ AD +SE +A+ F + F+ EF R+ +H+ AK++
Sbjct: 62 VIQTTSRVQHSWLDSQCRVVGHIDLTSWSAHAD--IGRIVSDIVTEFQRSPPVPIGRAATTPTPMYPDNSARPSSIPSYMQPFPPQASTYP----XXXXXXXXXAAQAGYNGSAYQQPPSVQMXXXXXXXXXXXKRETVSHTQAPAIPAVFPELDQLSVNQLEKLVTDRATLKAYIKNMDSVVNFMKLYDDLVEGNQELADSNLAHESSISSLQVEIEELKHQLHTAQEGLNVKLAKQNELMTQFQPEPLVARVVDAADEADEASEEIASRFANGEIDVSQFVAEFQPIRKLFHLRTAKVD 356
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A2P6MT56_9EUKA (Vacuolar protein sorting 37 protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MT56_9EUKA) HSP 1 Score: 66.2 bits (160), Expect = 2.370e-9 Identity = 43/163 (26.38%), Postives = 82/163 (50.31%), Query Frame = 1
Query: 430 HTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECM 918
HTP+P+IP+ F LE T +L LL D+ + V MK ++ ++ N E A+ LSK+ +L+ + + + EGK ++ + M + ++ ++ A+ A+ SS+ A FL + + F++ F++ER+ +H+ +AK E +
Sbjct: 23 HTPLPTIPSTFQELETRTASELAVLLNDEVEYDTFFNSLSCVQTMKQVRDDLRTKNEEVAKRGLSKESELELLQREIMSRHRVISEKKAILEGKLQKQQEIMKQFSTASMINNLEVAAGEAERSSDRTAEQFLNGTIDQKTFIQNFMQERKLFHLRSAKKESL 185
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: R7UME3_CAPTE (VPS37 C-terminal domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UME3_CAPTE) HSP 1 Score: 65.9 bits (159), Expect = 1.730e-8 Identity = 67/290 (23.10%), Postives = 130/290 (44.83%), Query Frame = 1
Query: 31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTTPPQAPMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRR---QDHTPI---------PSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSK----QESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQD 852
V+++ ++HPWVN MQVV L+ ++ +G ++ ++ EF R+ PP + + Y PP P + G ++++Q S + + +P P + Q P+ P +P F L+DL+ +L L D+S ++ +MP V + D + +C GN AR L++ +ES + L E+ +Q L L+T ++ + +++ + + ++K A++ A+ +SE +A++FL+ R A+D
Sbjct: 73 VVKVSPPLTHPWVNNQMQVVDCYELNAFNMHYD--LGKVIRGIVEEFQRN-------------PPLFPPQQSTFSYNYPPNVPT-------------IGGQATPRDFTASLQSYSPAPAAKSTLPYIPPNKGQFQYQNPVANIPGRYAMPDVPEYFSQLKDLSISELRELSADESKLLQMIGQMPEVQKLSDDQERMCGGNECLARENLNQRPILEESKKKLLEKYDQ----LNELRTQFDDLSKKQDDVLQRYDLSTLQDRLKVAAEEAEEASEKIADEFLDDRSFAKD 330
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: UPI001EB06E8A (vacuolar protein sorting-associated protein 37A-like n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EB06E8A) HSP 1 Score: 62.4 bits (150), Expect = 2.600e-7 Identity = 74/307 (24.10%), Postives = 126/307 (41.04%), Query Frame = 1
Query: 52 VSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAP------TGSSSGRGQDPP--------PSWGNEVRATGYTTPPQAPMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDI 930
++HPWV+ M+VVG PN++ + +G + ++ EF + P G G Q P P +GN PP P VE R G S+ QD + S P+P I + L+D +L L++++ LL +P +A + ++ V+ AR L+KQ L++ + EL A++ +E I +K A A+ SE +A+DFL+K++ ++FL+ ++++R HM AK E + + I
Sbjct: 80 LTHPWVDIQMKVVGCPNINNFSMHSD--LGVAIQTIVEEFKKTPPRILPHLVGQQFGAPQPPVAPVSGPGYPLYGNPQALYPLVGPPPLPPRA-----------VENGREGPPILSD-QDTNASSPAY--------------PVPDIMKAYPELKDKGLFELQELVDNEEKVLDLLQGLPELARFTQDREDISAQCVQLARENLTKQPVVEELKDSVLKKMSELDAIKGEFETHCEHHLTLSDQFHPANIQTNLKVAVMEAEEESEKIADDFLDKKIDIEEFLQTYMQKRTLCHMRKAKEEKLNQII 358
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A8J1TI20_OWEFU (Ofus.G034148 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TI20_OWEFU) HSP 1 Score: 62.4 bits (150), Expect = 2.860e-7 Identity = 75/337 (22.26%), Postives = 147/337 (43.62%), Query Frame = 1
Query: 52 VSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPT---------------------GSSSGRGQDPPPSWG-------NEVRATGY-----------TTPPQAPMGLAGGGLHIGMTDVEGV-RHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRL----ELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDI 930
V H WV+Q +V G +L+ ++ +G IV ++ EF R+ P G + +G PPP G + R TG T PP++ + +DV V +H S + Q +S G + +P IPT F L DL+ +L L E++ +L ++P + + + + +C N A+ ++ R + E+ +++ L +L L+T ++ + ++++ + + I +K A+ A+ SE +A++FL K++P DF++++L++R H +K E +++ +
Sbjct: 81 VQHAWVDQQNRVTGCMSLNEFNMHKD--LGKIVREIVEEFQRNPPQLQGQRNYSMLPNLPYSLNPPGGHVAPQGAAPPPFSGANTATPYSYTRNTGPSNDYMTNIRMPTLPPRSSV----------TSDVPSVPQHSIVTSQSSQPQYSSSYNNMSEHTLGTYK-----MPDIPTSFPQLRDLSVSELQELSENEDKLLEILQQLPEILKLGEDRQHMCNTNETIAKENIAN----RPVIEKNKEILLKRFDDLNELKTRFDTNSQKQDELRETYSARNIETTLKLATLEAEEQSEKIADEFLSKKIPIDDFIQQYLEKRSLCHNRRSKEEKLQQIV 396
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: UPI001CF27629 (vacuolar protein sorting-associated protein 37A-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF27629) HSP 1 Score: 62.0 bits (149), Expect = 3.650e-7 Identity = 73/319 (22.88%), Postives = 140/319 (43.89%), Query Frame = 1
Query: 31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSW-GNEVRATGYTTPPQA----------------PMGLAGGGLHIGMTDVEGVRHGHTE---SSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSI--PTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMK 921
V+++ Q+ HPWVN M VVG ++ + +G V +I EF +D PP + G++ T +TT P + P + + ++ + + SS V +S+S +I R P PS P+ F L+ L+ ++L L + + L + SV K +V N E AR LS Q +++ +M L L+ ++ + ++ + + I +++ A+ A+ SE++A++FL K++P ++F+++FL++R+ H AK + ++
Sbjct: 74 VVKVAPQLLHPWVNDQMMVVGCSAINNFYMHSN--LGRAVMDIINEF-------------KDHPPQFIGSQTSQTSFTTSPSSFQPLSSYSFAGYQPRFPPPSSAPPIAPSLSSLNSPLSQYVPPSVSSPVTAMSHSPANAQITQTTPSRPPPIPPRPSAKAPSSFAELDSLSLEELKDLNDKPEVMEVFLANLESVKKFDVDKEKVMLKNEELARFNLSLQSKLETSKDELLKMCERLSDLKQTFAKSSQKQQELTEVLSMASIRTQMEIAANEAEEQSEAIADEFLAKQMPLEEFIQKFLEKRKLCHSRRAKEDKLR 377
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A8J5AZG3_9DIPT (VPS37 C-terminal domain-containing protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5AZG3_9DIPT) HSP 1 Score: 57.8 bits (138), Expect = 3.140e-6 Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 1
Query: 469 LEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDIR 933
L L+++ L LL DD +A + E+ +A +++ KT + NV+ A +L+K+ LR + ++ + K L T + K +E G L ++ A+ ++ +S+ + FL+K LP FLE+F+ R+ H+ K E M IR
Sbjct: 16 LNYLSSEDLRELLNDDEKLEARVNEL--LAPLENDKTGILNANVQAAEESLTKEPQLIELRSRVNELSDKSKELCTDIQEKLNEMKSKSSGMNRDTALALLQTAAAESEEASDQIVKQFLDKELPVDGFLEQFMVSRKTMHLRKMKAEKMNELIR 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62445.13817.1 >prot_H-elongata_contig62445.13817.1 ID=prot_H-elongata_contig62445.13817.1|Name=mRNA_H-elongata_contig62445.13817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp MSGCSIVIDVVLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVback to top mRNA from alignment at H-elongata_contig62445:676..1994- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62445.13817.1 ID=mRNA_H-elongata_contig62445.13817.1|Name=mRNA_H-elongata_contig62445.13817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1319bp|location=Sequence derived from alignment at H-elongata_contig62445:676..1994- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62445:676..1994- >mRNA_H-elongata_contig62445.13817.1 ID=mRNA_H-elongata_contig62445.13817.1|Name=mRNA_H-elongata_contig62445.13817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig62445:676..1994- (Himanthalia elongata Himel1 dioecious)back to top |