mRNA_H-elongata_contig62408.13813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62408.13813.1
Unique NamemRNA_H-elongata_contig62408.13813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A6H5L3W0_9PHAE (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3W0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.770e-45
Identity = 88/96 (91.67%), Postives = 89/96 (92.71%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPRHLAHDPSLSR 289
            VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPA+QQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGP      PSL R
Sbjct:   64 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPAEQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPEDDV--PSLRR 157
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A835Z7X2_9STRA (Ubiquitin-related domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X2_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.410e-39
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 2 
Query:    8 RLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGPR 259
            RLRGGMQLFVKTLTGKTV+VDV+PGDSIETLKHKIQEKEGIP DQQRIIFGGKQL G +K L DF+LE+G+TLHLVLRLRGGPR
Sbjct:   56 RLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGIPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGPR 139
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A7S2V0I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0I9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.070e-29
Identity = 59/84 (70.24%), Postives = 73/84 (86.90%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+RLRGGMQ+FVKTL GKTV+V+VEPGD I+TLK KI EKEG+P DQQR+IF GKQL G  + L+D+++E+G T+HLVLRLRGG
Sbjct:   44 VLRLRGGMQVFVKTLNGKTVSVEVEPGDDIDTLKKKIAEKEGVPVDQQRLIFAGKQLEG--QTLADYDIEDGGTVHLVLRLRGG 125
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A6G3MKB3_HENSL (Polyubiquitin-B (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MKB3_HENSL)

HSP 1 Score: 122 bits (305), Expect = 1.270e-28
Identity = 59/84 (70.24%), Postives = 73/84 (86.90%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+RLRGGMQ+FVKTLTGKTVT+DVEPGDS+E +K KIQ+KEGIP DQQR+IF GKQL    + L+D+ +++ +TLHLVLRLRGG
Sbjct:   70 VLRLRGGMQIFVKTLTGKTVTLDVEPGDSVEDIKSKIQQKEGIPTDQQRLIFAGKQLEDG-RTLNDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A0C2JX55_THEKT (Polyubiquitin n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2JX55_THEKT)

HSP 1 Score: 122 bits (305), Expect = 2.480e-28
Identity = 59/84 (70.24%), Postives = 73/84 (86.90%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+RLRGGMQ+FVKTLTGKT+T+DVEP DS+ET+K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   70 VLRLRGGMQIFVKTLTGKTITLDVEPNDSVETVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A3P6GU73_MESCO (Ubiquitin-like domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A3P6GU73_MESCO)

HSP 1 Score: 118 bits (296), Expect = 2.690e-28
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+RLRGGMQ+FVKTLTGKT+T++VEP DSIE +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:    4 VLRLRGGMQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 86
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A6B2LW58_9EUKA (Ubiquitin-like domain-containing protein n=7 Tax=root TaxID=1 RepID=A0A6B2LW58_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 3.180e-28
Identity = 56/82 (68.29%), Postives = 71/82 (86.59%), Query Frame = 2 
Query:    8 RLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            RLRGGMQ+FVKTLTGKT+T++VEPGD+I+ +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:    2 RLRGGMQIFVKTLTGKTITLEVEPGDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 82
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A0G4HF80_9ALVE (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0G4HF80_9ALVE)

HSP 1 Score: 120 bits (300), Expect = 3.710e-28
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+RLRGGMQ+FVKTLTGKT+T+DVEP DSIE +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   70 VLRLRGGMQIFVKTLTGKTITLDVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A485KBK1_9STRA (Aste57867_3872 protein n=9 Tax=Oomycota TaxID=4762 RepID=A0A485KBK1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.710e-28
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+RLRGGMQ+FVKTLTGKT+T+DVEP DSI+ +K KIQ+KEGIP DQQR+IF GKQL    + LSD+ +++ +TLHLVLRLRGG
Sbjct:   70 VLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDG-RSLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Match: A0A7S2XYN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYN6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.930e-28
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 2 
Query:    2 VVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGG 253
            V+ LRGGMQ+FVKTL GKTV+V+VEPGD I+TLK KI EKEG+P DQQR+IF GKQL G  + L+D+++E+G T+HLVLRLRGG
Sbjct:   55 VLGLRGGMQVFVKTLNGKTVSVEVEPGDDIDTLKKKIAEKEGVPVDQQRLIFAGKQLEG--QTLADYDIEDGGTVHLVLRLRGG 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62408.13813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3W0_9PHAE1.770e-4591.67Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A835Z7X2_9STRA1.410e-3986.90Ubiquitin-related domain-containing protein n=2 Ta... [more]
A0A7S2V0I9_9STRA3.070e-2970.24Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6G3MKB3_HENSL1.270e-2870.24Polyubiquitin-B (Trinotate prediction) (Fragment) ... [more]
A0A0C2JX55_THEKT2.480e-2870.24Polyubiquitin n=1 Tax=Thelohanellus kitauei TaxID=... [more]
A0A3P6GU73_MESCO2.690e-2869.05Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A6B2LW58_9EUKA3.180e-2868.29Ubiquitin-like domain-containing protein n=7 Tax=r... [more]
A0A0G4HF80_9ALVE3.710e-2870.24Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
A0A485KBK1_9STRA3.710e-2869.05Aste57867_3872 protein n=9 Tax=Oomycota TaxID=4762... [more]
A0A7S2XYN6_9STRA3.930e-2869.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62408contigH-elongata_contig62408:396..2797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue5.6e-36
Seed eggNOG ortholog2880.D8LIW2
Preferred nameUBB
KEGG koko:K02927,ko:K02977,ko:K04551,ko:K08770
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG ModuleM00177,M00179
GOsGO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000902,GO:0001666,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006605,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030705,GO:0031090,GO:0031098,GO:0031145,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034643,GO:0034645,GO:0034654,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0036477,GO:0042175,GO:0042176,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042391,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046794,GO:0046907,GO:0047497,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061136,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097458,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0198738,GO:1901214,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902525,GO:1902527,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903050,GO:1903311,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0001@2759
Ec32 ortholog descriptionsimilar polyubiquitin
Ec32 orthologEc-20_001780.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size1757
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62408.13813.1prot_H-elongata_contig62408.13813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62408 1822..2775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.266829-UTR-H-elongata_contig62408:395..18211622931006.266829-UTR-H-elongata_contig62408:395..1821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62408 396..1821 -
1691679659.4424543-UTR-H-elongata_contig62408:395..18211691679659.4424543-UTR-H-elongata_contig62408:395..1821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62408 396..1821 -
1622931006.3234313-UTR-H-elongata_contig62408:2775..27971622931006.3234313-UTR-H-elongata_contig62408:2775..2797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62408 2776..2797 -
1691679659.4878983-UTR-H-elongata_contig62408:2775..27971691679659.4878983-UTR-H-elongata_contig62408:2775..2797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62408 2776..2797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.2849123-CDS-H-elongata_contig62408:1821..20281622931006.2849123-CDS-H-elongata_contig62408:1821..2028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62408 1822..2028 -
1691679659.4656005-CDS-H-elongata_contig62408:1821..20281691679659.4656005-CDS-H-elongata_contig62408:1821..2028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62408 1822..2028 -
1622931006.3045683-CDS-H-elongata_contig62408:2673..27751622931006.3045683-CDS-H-elongata_contig62408:2673..2775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62408 2674..2775 -
1691679659.4770954-CDS-H-elongata_contig62408:2673..27751691679659.4770954-CDS-H-elongata_contig62408:2673..2775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62408 2674..2775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62408.13813.1

>prot_H-elongata_contig62408.13813.1 ID=prot_H-elongata_contig62408.13813.1|Name=mRNA_H-elongata_contig62408.13813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPADQQRIIFGGKQL
SGADKQLSDFELEEGNTLHLVLRLRGGPRHLAHDPSLSRCSAWFPKACAD
GA*
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mRNA from alignment at H-elongata_contig62408:396..2797-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62408.13813.1 ID=mRNA_H-elongata_contig62408.13813.1|Name=mRNA_H-elongata_contig62408.13813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2402bp|location=Sequence derived from alignment at H-elongata_contig62408:396..2797- (Himanthalia elongata Himel1 dioecious)
GGTGGTGCGGCTGCGAGGGGGCATGCAGCTTTTCGTGAAAACACTAACGG
GGAAGACCGTGACGGTCGACGTGGAGCCGGGAGACTCAATCGAAACCCTG
AAGCACAAGATTCAGGAGAAGGAGGTAAGGTCGCCGTTGTAGTGGTCGCT
CTGAGGAATATTTCCGTGTCGCGTGATATTCGTGTAGCGGTCGTCCGAGC
GACATGTGCCATTAACTACGCTTAAGGCTTGGTTGAGAGGGGAGGGAGCA
CTTTTTTGGACGAATATCGAGAGTTGCCAATAGAAAGCCACGTGGTTTAA
TCTTCGAAATATTTTCTGCGCGATGGTAAAGTAGTCTAGTCTACCGCAGC
TAAGTAGTCTACCGCAGCTAACGGGCGCTAAGTTAGCCTTGCCCTACAGC
GATTGACTCACGGCAGCACACGCAAATCGGCCTCATGAAAAGAGCTTAGC
ACCTTGATGCACTTCTGAGGAGAAAACGCGACGAGGGCGCAGCTTGAGCG
CAGATTTCCTGCGCCAATAATTCCTTTTATCATACATTTTTTATTTTGTC
AAGATTGGGCGACTGGGGAGAAGGCTTGAATATACAAGACGGAAAACTCC
ATGCGGTGTTGGTATTTGGCGTCCGGCCTTCATTACAGAGGCGAATGTTC
TAGCAATCGAAAGCTGTTCCGGAAACGCGCGTTGTCTAAAAGCCCGCGTC
GCACGATCTACAGGGCCAAGTGCGTGGTGTCAAAATGTAATGCAGTTGTT
GCCCGCATCTCAAAAACAGGGCATTCCCGCGGATCAGCAACGTATAATCT
TCGGCGGGAAGCAGCTAAGCGGCGCGGACAAGCAGCTCAGCGACTTTGAG
CTGGAGGAGGGGAACACGTTGCATCTGGTGTTGCGTCTGAGAGGAGGACC
GAGGCACCTGGCGCACGACCCCAGTCTGTCGCGTTGCTCGGCATGGTTCC
CGAAAGCGTGCGCGGACGGCGCTTGATGCCTTTCTCTCGCGAACGCGTGA
CGTCCGATCTATGATTATATGAAGTGCGTCGTTCTTCGCAGCTTGCCCAT
GTTGATCGAATCGTCAAGAGCAGATTGGAAAATACATTCTCTGGCCCTCG
GATGAGGGCACATAGACATTTCATGTGGTAAAAGTTCTTCGCACTGTTTT
TGGCATGTCCGGCGGGTCGATGTGTTCGCAGGATATTAAATATATATGTC
TGTTGGAAATGAACCAAGCATATTTTGGCGCCTTCGTGGAGTGCTTCTAT
TGGGATCCTGGAATTGTGCGCAAGTGGAGTTGTCTCTCGTTTAGTTCCCG
ATTTGATTCAATCGGCGGATGCTGATGTGTCTGTAGAGACACAACAGTCG
ATGGAGCTGGGCGTTTGGAGATCCCTGGCGTTAGGTTATCGAACGATGTC
GAGGCTGTTGAGCGAAGTTCGTCGTGGAGGGTTTTCAGTGTCAAAAGACT
TGGTGGCTGCTGTTTATAGTATTAATACAAGTAAGGATGGTCGAAAAAAT
TCCCCGTGAAATGCGAGTAGGGCATTTAGTGGTCCTTGTAGCGTATGGGA
AGTCTGAAGAATACACATATACAGGAATACTCACTCGTGCAGCTACAAAG
CTATCCCTTGAAGACTCTCAAGCTCTTGAGCCAAATATTCTAATTTTATG
TTTACTCTTGAGCATTGTAAAAGTCTTTTCTATTAATAGTAAAAAACATA
ATAATTAACCCCCCCCCCCCGGTTATAACATCGAGAGCCACTTCCTTTTT
ATGGTGGACGAAAAAGTTAAACAGTCGAGTCTCTAGCAAGCCAAGCCGAC
TGCGGCGCATCCATGCTAAGGGATGTTAGACGTTGGTGCATGATTTAGGG
AACAAAGCCTAAACTTATCAAATAACATGTCATGACCATCACAGCCTCCT
ACTGGATTATACAGTGTTGTACCTAAGATTCATTGCTTTGCGTTTTTTTC
TCATTGGTCTATTATGAGGTTTGCGAGGCAACTTCGTCGACGTGTTTTCT
GGCCCGCTCACGTGTTTATGAATGCTGTAAGTTGCCGGAGTAGTGGCTAT
TAGCTTACGGTAGCCACGGAGGAACTAAGCCACTATTTGAGTCAGTACGG
AAGTCATCGATCGGTTCAAATTCCGGCAGGATACATGTGAGAACGGGAGT
TGTTGACGAAGGTTCAACATTATATTTTTAGAAATAAGAACTCATTAAAA
CCCTTCGAACATCCACATCTTATTGACACACGAGGTGTAGGAGTGCTGAA
CTGCTGATCTTGCACCACGACTAAAATATCGTTGGTGATAAACGGGGAAA
CATGGATGGTTTGATCCTTTAAGAATTATAGACGGAACACGGGCAACGTT
GCAGTTGGTTGGAGTGGTAACCTAGTTTTAGCACGTTGGAGAGCCCATCG
AG
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Coding sequence (CDS) from alignment at H-elongata_contig62408:396..2797-

>mRNA_H-elongata_contig62408.13813.1 ID=mRNA_H-elongata_contig62408.13813.1|Name=mRNA_H-elongata_contig62408.13813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig62408:396..2797- (Himanthalia elongata Himel1 dioecious)
ATGCAGCTTTTCGTGAAAACACTAACGGGGAAGACCGTGACGGTCGACGT
GGAGCCGGGAGACTCAATCGAAACCCTGAAGCACAAGATTCAGGAGAAGG
AGATGCAGCTTTTCGTGAAAACACTAACGGGGAAGACCGTGACGGTCGAC
GTGGAGCCGGGAGACTCAATCGAAACCCTGAAGCACAAGATTCAGGAGAA
GGAGGGCATTCCCGCGGATCAGCAACGTATAATCTTCGGCGGGAAGCAGC
TAAGCGGCGCGGACAAGCAGCTCAGCGACTTTGAGCTGGAGGAGGGGAAC
ACGTTGCATCTGGTGTTGCGTCTGAGAGGAGGACCGAGGCACCTGGCGCA
CGACCCCAGTCTGTCGCGTTGCTCGGCATGGTTCCCGAAAGCGTGCGCGG
ACGGCGCTTGAGGCATTCCCGCGGATCAGCAACGTATAATCTTCGGCGGG
AAGCAGCTAAGCGGCGCGGACAAGCAGCTCAGCGACTTTGAGCTGGAGGA
GGGGAACACGTTGCATCTGGTGTTGCGTCTGAGAGGAGGACCGAGGCACC
TGGCGCACGACCCCAGTCTGTCGCGTTGCTCGGCATGGTTCCCGAAAGCG
TGCGCGGACGGCGCTTGA
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