mRNA_H-elongata_contig62368.13808.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: D7FL07_ECTSI (DUF2012 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL07_ECTSI) HSP 1 Score: 263 bits (672), Expect = 1.540e-86 Identity = 130/166 (78.31%), Postives = 145/166 (87.35%), Query Frame = 1
Query: 28 MPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKVDDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQKAVADSASSFSFSDVLTNVLSGNA 525
MPDRSVVPTTKV LNGGQ ++LTARDGSF FRDV GVYLLEVLS FHFSAMK+KVDD TGIIAIEYKYPGAPRKEAIHPLLLTA KWNHFEK+EG+K+GG K+PMTI+M+LS MMFFLPKMMANLDPEQLEEIK QQKAV +S ++ SFS +L+N L+G A
Sbjct: 1 MPDRSVVPTTKVVLNGGQHSSLTARDGSFAFRDVAAGVYLLEVLSPNFHFSAMKIKVDDMTGIIAIEYKYPGAPRKEAIHPLLLTAHTKWNHFEKREGMKVGGMFKSPMTIIMVLSMAMMFFLPKMMANLDPEQLEEIKDQQKAVQESTANLSFSSLLSNALAGQA 166
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A6V2I1F6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2I1F6_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.490e-38 Identity = 80/178 (44.94%), Postives = 113/178 (63.48%), Query Frame = 1
Query: 10 IRGTLAMPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKVDDKT--GIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQKAVADSASSFSFSDVLTNVLSGNAAQPP 537
I+G L +PD S + TT++ LN G++TT T DG+F F V PGV+LL+V S +HFS +KV++ +++ IEY +PGAP+ A +P+LLTA AK+ +FEK++G LKNPM +MMI S G+MF +P MM NLDPE E ++ Q + +D S L L+G AQ P
Sbjct: 30 IQGQLLLPDGSDLNTTRITLNDGEQTTYTRPDGTFTFYHVPPGVHLLDVQSQFYHFSQVKVQLLEESMDAPKCIEYAFPGAPKTVAPYPILLTAHAKYEYFEKQQGFAFSSILKNPMMLMMIFSVGLMFVMPMMMDNLDPEDKERMQKQMEMQSDPQKMLSE---LMGGLTGAPAQAP 204
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A7S0CGJ2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGJ2_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.710e-36 Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 67 LNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKV------DDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQKAVAD 468
LN G+ +T T RDG+FV +V+PGV+LL+V S T FS +K+++ DD+ G+ IEY YPGA ++ HPL+LTA A++ +FE ++G IG KNPM IMM+ S G+MFF+PKMM NLD EQ E+++ Q + +D
Sbjct: 2 LNDGEYSTYTQRDGAFVLYNVLPGVHLLDVQSHTHLFSQVKIQLLEATETDDEMGLKCIEYAYPGASKQAIPHPLILTAHAQYQYFEPRQGFSIGTIFKNPMLIMMLFSVGLMFFMPKMMENLDDEQKEQMQKQMELQSD 141
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A836CIT1_9STRA (DUF2012 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT1_9STRA) HSP 1 Score: 134 bits (336), Expect = 2.000e-35 Identity = 70/157 (44.59%), Postives = 108/157 (68.79%), Query Frame = 1
Query: 1 AEDIRGTLAMPDRS-VVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKVDDKT---GIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKI-GGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQK 456
A I+G L++P+ + + TT++ LNGG+R+T + G+FVF V PGVY+L+V ST++HFS MK+KV ++ GI A+E+ YPGAP+K+A HPL L A A++ +FE +E + +NPM I+M L+ G M +PK+M +DPE L++ + +QK
Sbjct: 25 AVSIQGKLSLPEGAGPLETTRLTLNGGERSTYSQASGAFVFHGVGPGVYVLDVQSTSYHFSQMKIKVPEEGEGGGIQALEFVYPGAPKKDAPHPLALAAHAQYAYFEPREAFNVLTAMRRNPMLIIMALAMGAMALMPKLMEGMDPELLKQAQAEQK 181
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A6U1YD74_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1YD74_TRICV) HSP 1 Score: 129 bits (323), Expect = 2.990e-33 Identity = 67/155 (43.23%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 10 IRGTLAMPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKV--DDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQKAVAD 468
I+G L +PD + +T + LN GQ +T T G FVF V PGV++LE S HFS +K+++ + IEY YPGAP++ HPLLLTA A++ +FEK++G + L+NPM +MM+ S G+M +PKMM LD +Q E++K Q + D
Sbjct: 53 IKGRLRLPDDKPLNSTLITLNDGQYSTYTQAHGDFVFHAVGPGVHVLEAHSPLHHFSQVKIQLLSESMEAPKCIEYVYPGAPKQAIPHPLLLTAHARYEYFEKRQGFSLFSILRNPMMLMMMFSVGLMLLMPKMMEGLDDDQKEQMKRQMEMQQD 207
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A7S2CRA1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CRA1_9STRA) HSP 1 Score: 127 bits (318), Expect = 5.040e-33 Identity = 68/149 (45.64%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 10 IRGTLAMPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKV--DDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQ 450
+ G L PD+S PTTK+ LN G+ T + DGSF F DV PGVYLL+VLSTT FS +K+ + D + + +EY+YPGA ++ +PL L A K +FE +E I LKNPM+ M I S + PKMM ++DPEQ++E++ Q
Sbjct: 33 VEGRLLFPDKSTPPTTKLTLNAGEYETFSRFDGSFTFHDVKPGVYLLDVLSTTVMFSQVKLNLPNDPEGKVRCLEYRYPGAMKQPISYPLDLMAHVKIKYFEVRESFGIHTILKNPMSYMAIFSLFFIIVFPKMMNSMDPEQMKEMQDQ 181
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A7S2P968_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P968_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.620e-32 Identity = 67/156 (42.95%), Postives = 99/156 (63.46%), Query Frame = 1
Query: 10 IRGTLAMPDRSV-VPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKV--DDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQKAVAD 468
I+G L +PD + + +T++ LN G TT T +G F+F V PGV+LL+V S HFS +K+++ D IEY YPGAP++ HPL LTA A + ++EK++G I KNPM +MM+ + GM+F +PKMM ++DPEQ E ++ Q + D
Sbjct: 34 IQGRLRLPDSAASLNSTRITLNDGSFTTYTQPNGDFIFHRVPPGVHLLDVQSRQHHFSQVKIQLLEDAMDSPKCIEYVYPGAPKQAMPHPLELTAHASYEYYEKRQGFSIFSIFKNPMILMMLFTGGMLFLMPKMMEDMDPEQKEMMQKQMEFQQD 189
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A8J9X420_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X420_PHATR) HSP 1 Score: 120 bits (301), Expect = 3.300e-31 Identity = 58/137 (42.34%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 52 TTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKV--DDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQK 456
T++++LN G+ +T + DGSF + PG++ L+VLSTT HFS +K+++ D +EY YPGA +K A +P++L A+A +++FE + G + LKNPM +MM S G+MF +PKMM L+PE+ E +K Q +
Sbjct: 8 TSRISLNQGEFSTYSQTDGSFKLHSIPPGIHALDVLSTTHHFSQIKIQLVEGDMDNPKCLEYAYPGASKKPASYPVVLKAIATYDYFEPRRGFSVFSMLKNPMFLMMAFSVGLMFLMPKMMEGLEPEERERMKQQME 144
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A6H5JWY4_9PHAE (DUF2012 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY4_9PHAE) HSP 1 Score: 119 bits (297), Expect = 3.720e-31 Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 1 AEDIRGTLAMPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKVDDKTGI 216
AE+I GTLAMPDRSVVPTTKV LNGGQ ++LTARDGSF FRDV GVYLLEVLS FHFSAMK+KVDD TGI
Sbjct: 28 AEEILGTLAMPDRSVVPTTKVVLNGGQHSSLTARDGSFAFRDVAAGVYLLEVLSPNFHFSAMKIKVDDMTGI 99
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Match: A0A7S2SSA1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSA1_9STRA) HSP 1 Score: 122 bits (306), Expect = 9.370e-31 Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 1
Query: 10 IRGTLAMPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFSAMKVKV--DDKTGIIAIEYKYPGAPRKEAIHPLLLTALAKWNHFEKKEGVKIGGYLKNPMTIMMILSFGMMFFLPKMMANLDPEQLEEIKGQQKAVA 465
+ G L PD +V T+V LNGG+ TL+ DGSFVF V PG+YLL+VLS FS +K+ + D I +EY++PGA ++ +PL L A AK +FE++E + I +L+NPM+ M++ ++ PKM+ N+DPEQL+E++ Q +A
Sbjct: 51 VEGRLFFPDHTVPHATRVTLNGGEFETLSLVDGSFVFHHVPPGIYLLDVLSGAALFSQVKINLPSDPDGKIKCLEYRFPGAQKQPMSYPLDLQAHAKLKYFEEREKIGIHTFLRNPMSYMVLFGLFVIVVFPKMIGNMDPEQLKEMQEMQSQMA 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62368.13808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62368.13808.1 >prot_H-elongata_contig62368.13808.1 ID=prot_H-elongata_contig62368.13808.1|Name=mRNA_H-elongata_contig62368.13808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp MPDRSVVPTTKVALNGGQRTTLTARDGSFVFRDVVPGVYLLEVLSTTFHFback to top mRNA from alignment at H-elongata_contig62368:486..2697+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62368.13808.1 ID=mRNA_H-elongata_contig62368.13808.1|Name=mRNA_H-elongata_contig62368.13808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2212bp|location=Sequence derived from alignment at H-elongata_contig62368:486..2697+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62368:486..2697+ >mRNA_H-elongata_contig62368.13808.1 ID=mRNA_H-elongata_contig62368.13808.1|Name=mRNA_H-elongata_contig62368.13808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig62368:486..2697+ (Himanthalia elongata Himel1 dioecious)back to top |