mRNA_H-elongata_contig62312.13804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62312.13804.1
Unique NamemRNA_H-elongata_contig62312.13804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.870e-64
Identity = 133/312 (42.63%), Postives = 185/312 (59.29%), Query Frame = 1
Query:   10 RWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRV--IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVG-DKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPG--KIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            R+V D+G ++ M  ++D  V Y E    VR+A G    I G G++ ++  S     + +L  VAHVP L YNL+SL  + D G +    +K+ + L    G+ ++    G L   +GF    +      A IAPG  K PS +P+D N FH +HGH  E LLR+TA+Q G  L   LREC GCS AKGL KPI    STRA K   R+FV + G+  V S+GGK Y L++ DD++R+   YF++ KSD    F+ +LA  R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T  +SP++ GVAER
Sbjct:  368 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHA---CAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 675          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.890e-64
Identity = 133/312 (42.63%), Postives = 185/312 (59.29%), Query Frame = 1
Query:   10 RWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRV--IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVG-DKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPG--KIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            R+V D+G ++ M  ++D  V Y E    VR+A G    I G G++ ++  S     + +L  VAHVP L YNL+SL  + D G +    +K+ + L    G+ ++    G L   +GF    +      A IAPG  K PS +P+D N FH +HGH  E LLR+TA+Q G  L   LREC GCS AKGL KPI    STRA K   R+FV + G+  V S+GGK Y L++ DD++R+   YF++ KSD    F+ +LA  R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T  +SP++ GVAER
Sbjct:  381 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHA---CAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 688          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.920e-64
Identity = 133/312 (42.63%), Postives = 185/312 (59.29%), Query Frame = 1
Query:   10 RWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRV--IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVG-DKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPG--KIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            R+V D+G ++ M  ++D  V Y E    VR+A G    I G G++ ++  S     + +L  VAHVP L YNL+SL  + D G +    +K+ + L    G+ ++    G L   +GF    +      A IAPG  K PS +P+D N FH +HGH  E LLR+TA+Q G  L   LREC GCS AKGL KPI    STRA K   R+FV + G+  V S+GGK Y L++ DD++R+   YF++ KSD    F+ +LA  R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T  +SP++ GVAER
Sbjct:  524 RYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHA---CAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 831          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 6.310e-59
Identity = 121/316 (38.29%), Postives = 163/316 (51.58%), Query Frame = 1
Query:   58 DNMVNYREGGGVVRIADGRV----IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVGDKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPGKIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVL-ERTLRECEGCSVAKGLG---------------------KPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            DN VNYRE  G V+   G        G G++     +    V   + N AHVP   YNLLSL  +A+ GH Y G K G+TL  K G  ++    GKL    G+           A I PG   + +P + N +H +HGH  E LLR TA+Q GV L +  L  C GCSV KG                       KP+ ++ STRADK   R+++ + G+    SIG   Y L+I DDFSR+T  +F++ KSD    F+ FL   R    P  V + R+D+GGEF+G FA++ RRH I+QE T  ++PK+  VAER
Sbjct:    6 DNFVNYRERSGCVKGIGGDKAPVPFSGYGDVTFVLQTEDGGVPVPILNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGITLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTEPNEYHLAHGHDHETLLRITAEQQGVQLTDGPLLPCLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAER 321          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 4.240e-57
Identity = 124/311 (39.87%), Postives = 178/311 (57.23%), Query Frame = 1
Query:   10 RWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRV--IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVG-DKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPGKIPSVS-PLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            R V D+G ++ M  ++D  V Y E    VR+A G    I G G++ ++  S     + +L  VAHVP L YNL+SL  + D G +    +K+ + L    G++++    G L   +G     +        IAPG   + S P++ N FH +HGH  E LLR+TA+Q G  L   LREC GCS AKGL K I    STRA K   R+F+ + G+  V S+ GK Y L++ D ++R+   YF++ KSD    F+ +LA  R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T  +SP++ GVAER
Sbjct:  394 RCVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRGGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFQTKTLNKHELELERGGGESVYSPRCGNLYVHNGCRTHTEHA---YTAIAPGDAKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 701          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.300e-57
Identity = 115/295 (38.98%), Postives = 161/295 (54.58%), Query Frame = 1
Query:   46 TPSADNMVNYREGGGVVRIADGRVIEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVGDKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPGKIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVL-ERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            T  +      R GGG+        + G G++ +   +    V   + N AHVP   Y LLS   +A+ GH Y G K G+TL  K G  ++    GKL    G+           A I PG   + +P D N +H +HGH  E LLR TA+Q GV L +  L  C GCS++KG  KP+ ++ S+RA     R+++ + G+    SIGG  Y L+I DDFSR+T  +F++ KSD    F+ FLA  R  G P  V + R+D GGEF+G FA++CRRH I+QELT  ++P +  VAER
Sbjct:  293 TXRSSGRCGTRPGGGIGGDKAPIPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPEAPYKLLSQSSLAEEGHTYSGMKGGITLTTKAGGEVWFPRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAER 587          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.130e-55
Identity = 124/295 (42.03%), Postives = 170/295 (57.63%), Query Frame = 1
Query:   22 DSGCSSFMTPSADNMVNYREGGGVVRIADGRV--IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVGDKNGVTLHL-KNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPG--KIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELT 888
            D+G ++ M  ++D  V Y E    VR+A G    I G G++ ++  S     + +L  VAHVP L YNL+SL  + D G +     N   L L + G+++       L   +GF    +      A IAPG  K PS +P+D N FH +HGH  E LLR+TA+Q G  L   LREC GCS AKGL KPI    STRA K   R+FV + G+  V S+GGK Y L++ DD++R+   YF++ KSD    F+ +LA  R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T
Sbjct:  192 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFE-TKTLNKYDLELERGGESVRFPRYSNLYVQNGFRTHTEHA---CAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFT 481          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 5.350e-54
Identity = 111/245 (45.31%), Postives = 152/245 (62.04%), Query Frame = 1
Query:  205 LLGYNLLSLKMMADRGHKYVG-DKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPG--KIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            L+ YNL+SL  + D G +    DK+ + L  + G+ ++    GKL   +GF    +      A IAPG  K PS +P+D N FH +HGH  E LLR+TA+Q G  L   LREC GCS AKGL KPI    STRA K   R+FV + G+  V S+GGK Y L++ DD++R+   YF++ KSD    F+ +LA  R  G PS V VVRSD GGEF +G+F ++CR++ I+Q+ T  +SP++ GVAER
Sbjct:  241 LVAYNLVSLTSLFDDGFETKTLDKHELELDRRGGEVVYFPRCGKLYVQNGFRTHTEHA---CAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQDFTPAHSPEYNGVAER 481          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.870e-53
Identity = 121/313 (38.66%), Postives = 168/313 (53.67%), Query Frame = 1
Query:    4 VERWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRVIEGI--GNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKY--VGDKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPGKIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            +E W  D+G +  MT S   M +       V+   G   E    G L ++F S      A L NV + P LGYNL S     D G  +  +G  +GV     +G   F    G L   + +    +S   +LA + P     V  +D N FH  +GH  E +LR+TA++LG+ L   +  C GCS+ K + K I    +  +DK  GR+FV + G+K VASIGGK Y +++ DDF+R  W YF+R KSD  + F++FLA  R  G PS +E+VRSD GGEF  G+FA +C    I+QE T  +SP+F GVAER
Sbjct:  249 IEDWYADTGTAFNMTDSLSCMKDVNPCHNKVKGIGGVTCEVALSGTLEVAFVSADSEFSAELKNVLYAPKLGYNLFSPSAEFD-GESWNGLGGPDGVMTAF-HGHVTFQNFDGML-VATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558          
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.990e-52
Identity = 120/312 (38.46%), Postives = 162/312 (51.92%), Query Frame = 1
Query:    4 VERWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRV--IEGIGNLPMSFWSGKDWVEAILSNVAHVPLLGYNLLSLKMMAD-RGHKYVGDKNGVTLHLKNGKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPGKIPSVSPLDTNTFHASHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRADKVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIALFKNFLAGERVAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTTNSPKFTGVAER 927
            VE W  D+G +  MT     M + +     V+   G    IE  G L + F +        L NV + P LGYNL S     D     Y+G  +GV     NG   F    G L     +    +    +LA + P      S +D N FH  + H  E LLR+TA++LG+ L   +  C GCS++K   K I      R+DK  GR+FV + G K VAS+GGK Y +++ DDF+R TW YF++ KSD  + F++FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T   SP++ GVAER
Sbjct:  428 VEDWYADTGTAFHMTDRLSCMKDLKPCHKNVKGIGGVTCEIEFSGTLELVFVTADSQFPVELENVLYSPNLGYNLFSPSAEFDGESWNYLGGPDGVMTAF-NGHVTFQNLDGML-ISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62312.13804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZQ8_9PHAE2.870e-6442.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.890e-6442.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.920e-6442.63Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KGJ8_9PHAE6.310e-5938.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE4.240e-5739.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE5.300e-5738.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L8P7_9PHAE3.130e-5542.03Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L060_9PHAE5.350e-5445.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE1.870e-5338.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE1.990e-5238.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62312contigH-elongata_contig62312:393..1319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog67593.Physo132874
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size927
Cds size927
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.4144416-CDS-H-elongata_contig62312:392..13191622931005.4144416-CDS-H-elongata_contig62312:392..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62312 393..1319 +
1691679659.1114743-CDS-H-elongata_contig62312:392..13191691679659.1114743-CDS-H-elongata_contig62312:392..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62312 393..1319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62312.13804.1prot_H-elongata_contig62312.13804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62312 393..1319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62312.13804.1

>prot_H-elongata_contig62312.13804.1 ID=prot_H-elongata_contig62312.13804.1|Name=mRNA_H-elongata_contig62312.13804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
MVERWVTDSGCSSFMTPSADNMVNYREGGGVVRIADGRVIEGIGNLPMSF
WSGKDWVEAILSNVAHVPLLGYNLLSLKMMADRGHKYVGDKNGVTLHLKN
GKTLFGLSVGKLNCLSGFHCPLDSGDFLLATIAPGKIPSVSPLDTNTFHA
SHGHVDEKLLRSTAQQLGVVLERTLRECEGCSVAKGLGKPIGRTISTRAD
KVFGRLFVGICGEKYVASIGGKRYMLVICDDFSRFTWTYFMRQKSDTIAL
FKNFLAGERVAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTTNS
PKFTGVAER
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mRNA from alignment at H-elongata_contig62312:393..1319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62312.13804.1 ID=mRNA_H-elongata_contig62312.13804.1|Name=mRNA_H-elongata_contig62312.13804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig62312:393..1319+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGAACGATGGGTCACTGATAGTGGCTGCTCAAGTTTCATGACGCC TTCCGCTGACAATATGGTCAACTATCGCGAGGGTGGAGGTGTGGTAAGAA TCGCCGACGGCCGAGTGATCGAAGGCATTGGGAATTTACCGATGAGCTTC TGGTCTGGTAAGGATTGGGTGGAGGCAATTTTATCGAATGTCGCTCATGT CCCACTACTGGGATACAACTTGCTGTCTCTGAAGATGATGGCTGATCGTG GTCACAAGTACGTTGGCGACAAAAACGGGGTGACGTTGCATTTAAAAAAT GGGAAGACTCTCTTCGGCCTGTCGGTGGGTAAACTAAATTGCCTTTCCGG ATTCCACTGTCCTCTTGACTCGGGTGATTTTTTGCTTGCAACGATTGCGC CGGGAAAGATTCCATCCGTTTCGCCTTTGGATACCAATACTTTTCACGCG TCCCACGGGCATGTAGACGAGAAATTACTCCGTTCCACAGCCCAACAGCT CGGAGTAGTTCTTGAGAGAACCCTGAGGGAGTGCGAGGGGTGTTCAGTTG CTAAAGGTCTGGGCAAGCCGATCGGCAGGACAATTTCGACAAGGGCCGAT AAGGTATTTGGTCGCTTGTTCGTAGGCATTTGTGGAGAAAAGTATGTTGC GTCGATCGGAGGGAAGCGATACATGCTGGTAATCTGTGATGACTTCTCGC GTTTCACGTGGACATACTTCATGCGTCAAAAATCCGATACAATTGCTCTT TTTAAGAATTTTTTGGCAGGCGAACGCGTGGCAGGAACCCCCTCAGCAGT AGAAGTGGTACGTTCTGATGAAGGAGGAGAATTCAAAGGGGATTTTGCAA AACTCTGTAGGAGGCACAACATCCGTCAGGAGTTAACTACCACTAATAGC CCGAAATTTACCGGGGTAGCTGAACGT
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Coding sequence (CDS) from alignment at H-elongata_contig62312:393..1319+

>mRNA_H-elongata_contig62312.13804.1 ID=mRNA_H-elongata_contig62312.13804.1|Name=mRNA_H-elongata_contig62312.13804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig62312:393..1319+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGAACGATGGGTCACTGATAGTGGCTGCTCAAGTTTCATGACGCC
TTCCGCTGACAATATGGTCAACTATCGCGAGGGTGGAGGTGTGGTAAGAA
TCGCCGACGGCCGAGTGATCGAAGGCATTGGGAATTTACCGATGAGCTTC
TGGTCTGGTAAGGATTGGGTGGAGGCAATTTTATCGAATGTCGCTCATGT
CCCACTACTGGGATACAACTTGCTGTCTCTGAAGATGATGGCTGATCGTG
GTCACAAGTACGTTGGCGACAAAAACGGGGTGACGTTGCATTTAAAAAAT
GGGAAGACTCTCTTCGGCCTGTCGGTGGGTAAACTAAATTGCCTTTCCGG
ATTCCACTGTCCTCTTGACTCGGGTGATTTTTTGCTTGCAACGATTGCGC
CGGGAAAGATTCCATCCGTTTCGCCTTTGGATACCAATACTTTTCACGCG
TCCCACGGGCATGTAGACGAGAAATTACTCCGTTCCACAGCCCAACAGCT
CGGAGTAGTTCTTGAGAGAACCCTGAGGGAGTGCGAGGGGTGTTCAGTTG
CTAAAGGTCTGGGCAAGCCGATCGGCAGGACAATTTCGACAAGGGCCGAT
AAGGTATTTGGTCGCTTGTTCGTAGGCATTTGTGGAGAAAAGTATGTTGC
GTCGATCGGAGGGAAGCGATACATGCTGGTAATCTGTGATGACTTCTCGC
GTTTCACGTGGACATACTTCATGCGTCAAAAATCCGATACAATTGCTCTT
TTTAAGAATTTTTTGGCAGGCGAACGCGTGGCAGGAACCCCCTCAGCAGT
AGAAGTGGTACGTTCTGATGAAGGAGGAGAATTCAAAGGGGATTTTGCAA
AACTCTGTAGGAGGCACAACATCCGTCAGGAGTTAACTACCACTAATAGC
CCGAAATTTACCGGGGTAGCTGAACGTATGGTTGAACGATGGGTCACTGA
TAGTGGCTGCTCAAGTTTCATGACGCCTTCCGCTGACAATATGGTCAACT
ATCGCGAGGGTGGAGGTGTGGTAAGAATCGCCGACGGCCGAGTGATCGAA
GGCATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGGTGGA
GGCAATTTTATCGAATGTCGCTCATGTCCCACTACTGGGATACAACTTGC
TGTCTCTGAAGATGATGGCTGATCGTGGTCACAAGTACGTTGGCGACAAA
AACGGGGTGACGTTGCATTTAAAAAATGGGAAGACTCTCTTCGGCCTGTC
GGTGGGTAAACTAAATTGCCTTTCCGGATTCCACTGTCCTCTTGACTCGG
GTGATTTTTTGCTTGCAACGATTGCGCCGGGAAAGATTCCATCCGTTTCG
CCTTTGGATACCAATACTTTTCACGCGTCCCACGGGCATGTAGACGAGAA
ATTACTCCGTTCCACAGCCCAACAGCTCGGAGTAGTTCTTGAGAGAACCC
TGAGGGAGTGCGAGGGGTGTTCAGTTGCTAAAGGTCTGGGCAAGCCGATC
GGCAGGACAATTTCGACAAGGGCCGATAAGGTATTTGGTCGCTTGTTCGT
AGGCATTTGTGGAGAAAAGTATGTTGCGTCGATCGGAGGGAAGCGATACA
TGCTGGTAATCTGTGATGACTTCTCGCGTTTCACGTGGACATACTTCATG
CGTCAAAAATCCGATACAATTGCTCTTTTTAAGAATTTTTTGGCAGGCGA
ACGCGTGGCAGGAACCCCCTCAGCAGTAGAAGTGGTACGTTCTGATGAAG
GAGGAGAATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGGCACAACATC
CGTCAGGAGTTAACTACCACTAATAGCCCGAAATTTACCGGGGTAGCTGA
ACGT
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