mRNA_H-elongata_contig623.13801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig623.13801.1
Unique NamemRNA_H-elongata_contig623.13801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig623.13801.1 vs. uniprot
Match: A0A6H5KUM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 9.190e-11
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   79 GKKRSKSLADQIYDLSSEVGVLRSRSADIVRALRSTAQGVHELEDAFRPLLVALESGLAECHQADLEAIF 288
            G  +S SLAD++Y+LS ++  LR +SA  V ALR  AQGV EL+ AFRPL  A+E+GLAECHQA+L   +
Sbjct:   15 GPPQSLSLADEVYNLSLKLAELRWQSAGKVDALRCVAQGVPELQQAFRPLHAAVEAGLAECHQANLAVSY 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig623.13801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUM4_9PHAE9.190e-1155.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig623contigH-elongata_contig623:687..2663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1000
Cds size999
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig623.13801.1prot_H-elongata_contig623.13801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig623 687..2662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.091544-CDS-H-elongata_contig623:686..8781622931005.091544-CDS-H-elongata_contig623:686..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 687..878 +
1691679658.9917006-CDS-H-elongata_contig623:686..8781691679658.9917006-CDS-H-elongata_contig623:686..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 687..878 +
1622931005.1164143-CDS-H-elongata_contig623:1380..14671622931005.1164143-CDS-H-elongata_contig623:1380..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 1381..1467 +
1691679659.0102146-CDS-H-elongata_contig623:1380..14671691679659.0102146-CDS-H-elongata_contig623:1380..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 1381..1467 +
1622931005.1343002-CDS-H-elongata_contig623:1579..17701622931005.1343002-CDS-H-elongata_contig623:1579..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 1580..1770 +
1691679659.020468-CDS-H-elongata_contig623:1579..17701691679659.020468-CDS-H-elongata_contig623:1579..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 1580..1770 +
1622931005.150444-CDS-H-elongata_contig623:2133..26621622931005.150444-CDS-H-elongata_contig623:2133..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 2134..2662 +
1691679659.0305827-CDS-H-elongata_contig623:2133..26621691679659.0305827-CDS-H-elongata_contig623:2133..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig623 2134..2662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig623.13801.1

>prot_H-elongata_contig623.13801.1 ID=prot_H-elongata_contig623.13801.1|Name=mRNA_H-elongata_contig623.13801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
SVGCLSVGSTDYAGSSRFAKGLGAAGGKKRSKSLADQIYDLSSEVGVLRS
RSADIVRALRSTAQGVHELEDAFRPLLVALESGLAECHQADLEAIFGRSA
VPRGVLGCPPTAGNRDVCSSEFGGTAAAVERLDHLISALYRDVAAAGMLA
DQGERLREIARWARRAISSTTPQPPPTSGARKSEVTTDHATLHRRDACAP
RNSDVIGEPRSALGGGGQWTLRVFQDNDPGPERFGKIESDVLFRSHDRSV
HINAGQSNTHTFNNRSIGSSRRGRKRGGCPIVAVQALRAALSTVDPPATE
APATLPLREGGVEGGASAPSYSLVKSVAGAWSF
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mRNA from alignment at H-elongata_contig623:687..2663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig623.13801.1 ID=mRNA_H-elongata_contig623.13801.1|Name=mRNA_H-elongata_contig623.13801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1977bp|location=Sequence derived from alignment at H-elongata_contig623:687..2663+ (Himanthalia elongata Himel1 dioecious)
AGCGTCGGCTGTTTGTCGGTGGGCAGCACTGACTACGCAGGGTCATCGAG
GTTTGCGAAAGGACTCGGGGCGGCCGGAGGAAAGAAGCGCTCAAAAAGCC
TCGCGGACCAGATTTACGATCTATCCTCCGAGGTGGGAGTGCTACGCTCG
CGATCGGCGGATATAGTGCGCGCGTTGCGATCCACTGCCCAGGTGAGGAA
TCTTCACAAGTACTGCTTGGGCTGAACACGGTATTCGGACAAGAAAGTCG
ACTTTTGGGTAAACGGTGACCTGTTGCCTAAAATAATCTTGTACCAGATT
TTATCGCTTTTGGGAGCCAACTACTGTGTGTCAATTAACTTATGCTCGCG
AACTTTACGTATGTGTCCATAAATGCCCGTTCGAGCAGATCCAGGGAACG
CAAATGCCCTTCATGATTGTCTCGACAGCACATGCGCCACCGACGCTGAG
AGCTGATTCTTACACTTTTGGCGAGGTTTTTCTGAATCCGAGGAGTTTCC
CCCCGGCCATCCTCGCAGTTAGCTAGAAAGTCGAACTTCGACGTCCATGT
CCTGGGGTCTGTAGCAAACAGCTGTATTAAGCGCATTGTCCTACGATGTA
TCCTGCTCCAGGAGTGGATTGTTTACAAGCGCTGCTCTTTCAACTGTACG
GGTGCGCGTGCCTTTTTCTGCCTTTTTCTAAATCATGGCGCCAGGGTGTT
CATGAGCTTGAAGATGCGTTTCGTCCACTGCTCGTTGCTTTGGAGTCCGG
TCTAGCCGAGTGCCACCAAGCCGACCTTGAGGTGGGATTATCCTACAGCG
CTAGGGTAGATGACTGAATATATCTTTGGCGATTGCAGAAGTGAACTTTT
TTGCTCCTGACAGACCAACTAACGCAATAGTCTTTCGATGCAGGCGATTT
TTGGGCGATCAGCTGTCCCAAGAGGCGTGCTTGGATGTCCGCCAACCGCT
GGAAACCGGGACGTCTGCTCCAGTGAGTTCGGTGGGACCGCAGCGGCAGT
AGAACGTCTAGACCACCTCATCTCGGCACTCTATCGTGATGTGGCCGCCG
CCGGAATGCTCGCGGATCAAGGAGAGCGTCTCAGGTGATTTGCGGGGTCT
CTTATCTCAGCTCGCACTTCATTATGTGGAAGTCGACAAGGCCGAACTAA
CATTAAAAAAAGTTTTGCCGTTTCGCCGCCTCTGTTGCCTCCTGAGGTCA
GATGACTCGGATGCATCACACACAACCTCCGCTCCCCTCCCCCATACGCG
CGGTTAGGATGACCCGCTTGTCTCGTATCTGCATTTGGAATGAAGGCTTT
ATTGGTCCTTCCATCAGTAATTTAAGTGAGTGACACGTTGATAAATCCAT
CACTTCCTCCCTGTATTGAGTTTACCGGCAGCAAAAAAGCTATGATATCT
GCACAATAATGATTTTAACAACGAGCGTGATCGATATCGCTGTGCAGGGA
AATAGCTCGGTGGGCGCGGCGAGCGATTTCCTCGACGACTCCTCAACCAC
CTCCGACTTCAGGTGCTAGGAAAAGTGAAGTCACTACCGACCATGCTACA
CTGCACAGAAGAGACGCGTGTGCACCTAGAAACAGCGACGTAATTGGCGA
GCCACGATCGGCTCTGGGCGGCGGCGGACAATGGACTCTCCGTGTTTTCC
AAGACAATGATCCAGGCCCCGAGCGTTTTGGCAAGATTGAAAGCGATGTA
CTATTTCGCAGTCATGATCGCTCAGTTCACATCAATGCCGGCCAGAGCAA
CACCCACACTTTCAACAACCGTAGTATTGGCAGCAGCCGACGCGGTCGCA
AACGAGGCGGGTGTCCAATTGTGGCCGTCCAGGCTCTCCGCGCGGCCTTG
TCCACGGTGGATCCACCAGCCACGGAAGCTCCAGCAACGTTGCCATTGCG
CGAGGGTGGCGTTGAAGGTGGAGCAAGCGCCCCCTCTTACTCGTTGGTCA
AAAGCGTCGCAGGGGCATGGAGTTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig623:687..2663+

>mRNA_H-elongata_contig623.13801.1 ID=mRNA_H-elongata_contig623.13801.1|Name=mRNA_H-elongata_contig623.13801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig623:687..2663+ (Himanthalia elongata Himel1 dioecious)
AGCGTCGGCTGTTTGTCGGTGGGCAGCACTGACTACGCAGGGTCATCGAG
GTTTGCGAAAGGACTCGGGGCGGCCGGAGGAAAGAAGCGCTCAAAAAGCC
TCGCGGACCAGATTTACGATCTATCCTCCGAGGTGGGAGTGCTACGCTCG
CGATCGGCGGATATAGTGCGCGCGTTGCGATCCACTGCCCAGAGCGTCGG
CTGTTTGTCGGTGGGCAGCACTGACTACGCAGGGTCATCGAGGTTTGCGA
AAGGACTCGGGGCGGCCGGAGGAAAGAAGCGCTCAAAAAGCCTCGCGGAC
CAGATTTACGATCTATCCTCCGAGGTGGGAGTGCTACGCTCGCGATCGGC
GGATATAGTGCGCGCGTTGCGATCCACTGCCCAGGGTGTTCATGAGCTTG
AAGATGCGTTTCGTCCACTGCTCGTTGCTTTGGAGTCCGGTCTAGCCGAG
TGCCACCAAGCCGACCTTGAGGGTGTTCATGAGCTTGAAGATGCGTTTCG
TCCACTGCTCGTTGCTTTGGAGTCCGGTCTAGCCGAGTGCCACCAAGCCG
ACCTTGAGGCGATTTTTGGGCGATCAGCTGTCCCAAGAGGCGTGCTTGGA
TGTCCGCCAACCGCTGGAAACCGGGACGTCTGCTCCAGTGAGTTCGGTGG
GACCGCAGCGGCAGTAGAACGTCTAGACCACCTCATCTCGGCACTCTATC
GTGATGTGGCCGCCGCCGGAATGCTCGCGGATCAAGGAGAGCGTCTCAGG
CGATTTTTGGGCGATCAGCTGTCCCAAGAGGCGTGCTTGGATGTCCGCCA
ACCGCTGGAAACCGGGACGTCTGCTCCAGTGAGTTCGGTGGGACCGCAGC
GGCAGTAGAACGTCTAGACCACCTCATCTCGGCACTCTATCGTGATGTGG
CCGCCGCCGGAATGCTCGCGGATCAAGGAGAGCGTCTCAGGGAAATAGCT
CGGTGGGCGCGGCGAGCGATTTCCTCGACGACTCCTCAACCACCTCCGAC
TTCAGGTGCTAGGAAAAGTGAAGTCACTACCGACCATGCTACACTGCACA
GAAGAGACGCGTGTGCACCTAGAAACAGCGACGTAATTGGCGAGCCACGA
TCGGCTCTGGGCGGCGGCGGACAATGGACTCTCCGTGTTTTCCAAGACAA
TGATCCAGGCCCCGAGCGTTTTGGCAAGATTGAAAGCGATGTACTATTTC
GCAGTCATGATCGCTCAGTTCACATCAATGCCGGCCAGAGCAACACCCAC
ACTTTCAACAACCGTAGTATTGGCAGCAGCCGACGCGGTCGCAAACGAGG
CGGGTGTCCAATTGTGGCCGTCCAGGCTCTCCGCGCGGCCTTGTCCACGG
TGGATCCACCAGCCACGGAAGCTCCAGCAACGTTGCCATTGCGCGAGGGT
GGCGTTGAAGGTGGAGCAAGCGCCCCCTCTTACTCGTTGGTCAAAAGCGT
CGCAGGGGCATGGAGTTTTGGAAATAGCTCGGTGGGCGCGGCGAGCGATT
TCCTCGACGACTCCTCAACCACCTCCGACTTCAGGTGCTAGGAAAAGTGA
AGTCACTACCGACCATGCTACACTGCACAGAAGAGACGCGTGTGCACCTA
GAAACAGCGACGTAATTGGCGAGCCACGATCGGCTCTGGGCGGCGGCGGA
CAATGGACTCTCCGTGTTTTCCAAGACAATGATCCAGGCCCCGAGCGTTT
TGGCAAGATTGAAAGCGATGTACTATTTCGCAGTCATGATCGCTCAGTTC
ACATCAATGCCGGCCAGAGCAACACCCACACTTTCAACAACCGTAGTATT
GGCAGCAGCCGACGCGGTCGCAAACGAGGCGGGTGTCCAATTGTGGCCGT
CCAGGCTCTCCGCGCGGCCTTGTCCACGGTGGATCCACCAGCCACGGAAG
CTCCAGCAACGTTGCCATTGCGCGAGGGTGGCGTTGAAGGTGGAGCAAGC
GCCCCCTCTTACTCGTTGGTCAAAAGCGTCGCAGGGGCATGGAGTTTT
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