mRNA_H-elongata_contig6229.13799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6229.13799.1
Unique NamemRNA_H-elongata_contig6229.13799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.010e-44
Identity = 79/161 (49.07%), Postives = 116/161 (72.05%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAG 483
            TK V+VTKE +K+ ++D + P IK R+P    G     + +++Q DN   H I  +P+V+AA  ADGWDIRLIN P+NSPDTN+LDLG FN++QSLQDR TP++VD+ +  VK A++   P+  +++W+SLQA L QI+LA G++++KLPH++K    N+G
Sbjct:  117 TKCVEVTKEVFKRKVVDEVFPAIKARWP----GG--RGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKKDNAANSG 270          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.480e-42
Identity = 74/163 (45.40%), Postives = 110/163 (67.48%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            T+PV VTKE Y+  ++D +IP IK+R+P          K +W+QQD+ARPH+ +++  V+AA  +DGWDIRL   P+ SPD NVLDLGLFN+IQSLQ  T   ++++LV AV +A+ +  P VL++ +++LQ  +E ++   GD+ YK+PH  K +L   G L
Sbjct:  121 TEPVVVTKEVYRSFLVDKVIPAIKSRWP------GRRSKTIWVQQDSARPHVAVDDAPVLAAGQSDGWDIRLCAQPSQSPDMNVLDLGLFNAIQSLQHHTASYTIEELVLAVSKAYDDLDPLVLDKTFMTLQKVMECVLKMDGDNVYKIPHANKDKLLKNGPL 277          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV)

HSP 1 Score: 150 bits (380), Expect = 2.820e-42
Identity = 72/163 (44.17%), Postives = 113/163 (69.33%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            TK +KV ++  ++ M+++++P I++ +P    G +     ++++QDNA+PHI+ N+PE + A+ + G DIRLI  PANSPD N LDLG FNS+QSL D  +P+++ DL+K V E ++N     LNR++LSLQAC+ +I+   G + YK+PH+ K RLE+ G L
Sbjct:   91 TKSIKVNRQVMREFMIENLLPAIQSSWPDNDAGQT-----IFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERLESLGLL 248          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: UPI0019D5EA5F (uncharacterized protein LOC120691778 isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5EA5F)

HSP 1 Score: 149 bits (376), Expect = 7.760e-42
Identity = 72/163 (44.17%), Postives = 107/163 (65.64%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            TKP+KV + T +  ++  ++  I  R+PR  TG +     +W+QQDNA  H+++N+ E  AA++  G+DIRLIN P NSPD NVLDLG F S+QSL +    +++DDL+  V++ + N  PT LNR +L+LQ C+ ++M  GG + YK+ H+ K RLE  G L
Sbjct:   81 TKPIKVDRSTMRSYVIGKVLKAIVERWPREHTGNT-----IWIQQDNAPSHLLVNDEEFAAAVAQTGFDIRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISHMNKNRLEALGML 238          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: UPI0019D56D37 (uncharacterized protein LOC120678921 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D56D37)

HSP 1 Score: 151 bits (381), Expect = 1.300e-41
Identity = 77/165 (46.67%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 TKPV-KVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRT-TPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            TKP+  VT++  ++ ++D ++PDIK ++P     A    + +W+QQDN R HI +++PE  AA  ADGWDIRL   PANSPDTNVLDLGLF +IQ+L  R+  PK++D++V  V+ A+ N P    NR++L+LQ CL +I+   G   Y +PH++K  LE  GTL
Sbjct:  169 TKPITSVTRDVVRRYLIDKMLPDIKAKWP-----AEGRHETIWIQQDNCRSHIPVDDPEFCAAAQADGWDIRLTCQPANSPDTNVLDLGLFAAIQALFHRSGMPKTIDEIVNKVQAAYWNFPVGRSNRVFLTLQGCLREILKEKGGQHYPVPHMKKAMLERLGTL 328          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: UPI0019D68C4E (uncharacterized protein LOC120691778 isoform X1 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D68C4E)

HSP 1 Score: 149 bits (376), Expect = 1.490e-41
Identity = 72/163 (44.17%), Postives = 107/163 (65.64%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            TKP+KV + T +  ++  ++  I  R+PR  TG +     +W+QQDNA  H+++N+ E  AA++  G+DIRLIN P NSPD NVLDLG F S+QSL +    +++DDL+  V++ + N  PT LNR +L+LQ C+ ++M  GG + YK+ H+ K RLE  G L
Sbjct:  106 TKPIKVDRSTMRSYVIGKVLKAIVERWPREHTGNT-----IWIQQDNAPSHLLVNDEEFAAAVAQTGFDIRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISHMNKNRLEALGML 263          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: A0A0A9BDH3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9BDH3_ARUDO)

HSP 1 Score: 145 bits (365), Expect = 4.030e-41
Identity = 75/163 (46.01%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    4 KPVK-VTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            KP++ +TKE  +  M++ ++P I+ ++PR    AS   K +++QQDNARPHI  N+     A   DG+DIR++  PANSPD N+LDLG FNS+QS+Q +TT K+ ++LV AV +A++    +  NR++L+L  CL +IM  GG++SY +PHIRK  LE  G L
Sbjct:    4 KPIESITKEVIRSFMIEKVLPAIRVKWPR--EDAS---KPIFIQQDNARPHIAPNDKLFCEAAKQDGFDIRIVCQPANSPDLNILDLGFFNSLQSIQQKTTCKTKEELVAAVDKAFEEYQVSKANRIFLTLHGCLNEIMRIGGNNSYNIPHIRKAMLERQGHL 161          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: A0A452XZT7_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XZT7_AEGTS)

HSP 1 Score: 149 bits (375), Expect = 1.280e-40
Identity = 72/163 (44.17%), Postives = 110/163 (67.48%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            TK +KV ++  ++ M+++++P I+  +P    G +     +++QQDNA+PHI+ N+PE +AA+   G DIRLI  P NSPD N L+LG FNS+QSL D  +P+++ DL+K V + ++N     LNR++LSLQAC+ +I+   G + YK+PH  K RLEN G L
Sbjct:  177 TKSIKVNRQVMREFMIENLLPAIQASWPENDAGQT-----IYIQQDNAKPHILPNDPEFVAAVERTGLDIRLIQQPVNSPDLNGLELGFFNSLQSLTDCLSPRTLQDLIKGVLDEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHANKERLENLGML 334          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: W4HAZ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAZ6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.470e-40
Identity = 71/163 (43.56%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            TKPV VT++ Y+ M++DH+IP IK ++P    G   E + + +QQDNARPH+   +  ++ A ++DGW + L   P NSPD NVLDLG F +IQSLQ++   ++VDD+V A  EAW+   P  LN  +L+LQ C+ +++   G+++YK+PH++K  L   G L
Sbjct:   49 TKPVSVTRDMYRAMLIDHVIPAIKAKWP---VG---ESRRIIIQQDNARPHVPPLDSRIVDACTSDGWMMELKYQPPNSPDLNVLDLGFFRAIQSLQEKNYSRNVDDIVAASDEAWKQVEPMTLNANFLTLQCCMHEVIRVAGNNNYKIPHMKKASLALKGML 205          
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Match: A0A6A4Z2B2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2B2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.570e-40
Identity = 72/163 (44.17%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    1 TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARPHIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRTTPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLPHIRKGRLENAGTL 489
            T PV VT+  YK M+LDH+IP IK ++P      S E K + +QQDNARPHI   + +++AA ++DGW + +   P NSPD N+LDLG F +IQSLQ +   + +DD+V A ++AW +     LN  +L+LQ CL++++  GG+++YK+PH++K  L   G L
Sbjct:  275 TSPVSVTRSVYKAMLLDHVIPAIKRKWP------STESKKITIQQDNARPHIPPRDHDIVAACTSDGWAMEVKYQPPNSPDMNILDLGFFRAIQSLQVKNHSRCIDDIVSATEQAWIDVESATLNANFLTLQCCLQEVVRMGGNNNYKIPHMKKAALAARGML 431          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6229.13799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE1.010e-4449.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024UI08_9STRA2.480e-4245.40Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8I6WKB7_HORVV2.820e-4244.17Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
UPI0019D5EA5F7.760e-4244.17uncharacterized protein LOC120691778 isoform X2 n=... [more]
UPI0019D56D371.300e-4146.67uncharacterized protein LOC120678921 n=1 Tax=Panic... [more]
UPI0019D68C4E1.490e-4144.17uncharacterized protein LOC120691778 isoform X1 n=... [more]
A0A0A9BDH3_ARUDO4.030e-4146.01Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A452XZT7_AEGTS1.280e-4044.17Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
W4HAZ6_9STRA1.470e-4043.56Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6A4Z2B2_9STRA1.570e-4044.17Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6229contigH-elongata_contig6229:3..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog157072.XP_008866696.1
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931004.72595-CDS-H-elongata_contig6229:2..4911622931004.72595-CDS-H-elongata_contig6229:2..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6229 3..491 +
1691679658.8536105-CDS-H-elongata_contig6229:2..4911691679658.8536105-CDS-H-elongata_contig6229:2..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6229 3..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6229.13799.1prot_H-elongata_contig6229.13799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6229 3..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6229.13799.1

>prot_H-elongata_contig6229.13799.1 ID=prot_H-elongata_contig6229.13799.1|Name=mRNA_H-elongata_contig6229.13799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
TKPVKVTKETYKKMMLDHIIPDIKNRFPRPPTGASPEDKIVWMQQDNARP
HIIINEPEVMAAISADGWDIRLINHPANSPDTNVLDLGLFNSIQSLQDRT
TPKSVDDLVKAVKEAWQNDPPTVLNRMWLSLQACLEQIMLAGGDHSYKLP
HIRKGRLENAGTL
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mRNA from alignment at H-elongata_contig6229:3..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6229.13799.1 ID=mRNA_H-elongata_contig6229.13799.1|Name=mRNA_H-elongata_contig6229.13799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig6229:3..491+ (Himanthalia elongata Himel1 dioecious)
ACGAAGCCAGTCAAGGTCACAAAAGAGACGTACAAGAAGATGATGCTTGA CCATATTATCCCGGACATCAAGAACCGGTTCCCCCGCCCTCCAACCGGCG CCAGTCCCGAAGACAAGATTGTGTGGATGCAGCAGGACAACGCCCGTCCC CATATCATCATCAATGAACCAGAAGTGATGGCTGCAATATCGGCGGACGG ATGGGACATCCGGCTGATCAATCATCCCGCCAACAGCCCGGACACTAACG TCCTTGATTTGGGGCTCTTTAACTCGATCCAGTCCCTACAAGACCGCACG ACCCCGAAAAGCGTGGATGACCTGGTCAAGGCCGTGAAGGAGGCATGGCA AAATGATCCGCCGACCGTGCTCAACCGGATGTGGCTGAGCCTACAGGCGT GTCTGGAGCAAATCATGCTTGCGGGTGGCGACCACAGTTACAAGTTGCCG CATATTCGCAAGGGCAGGCTCGAAAACGCGGGTACGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig6229:3..491+

>mRNA_H-elongata_contig6229.13799.1 ID=mRNA_H-elongata_contig6229.13799.1|Name=mRNA_H-elongata_contig6229.13799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig6229:3..491+ (Himanthalia elongata Himel1 dioecious)
ACGAAGCCAGTCAAGGTCACAAAAGAGACGTACAAGAAGATGATGCTTGA
CCATATTATCCCGGACATCAAGAACCGGTTCCCCCGCCCTCCAACCGGCG
CCAGTCCCGAAGACAAGATTGTGTGGATGCAGCAGGACAACGCCCGTCCC
CATATCATCATCAATGAACCAGAAGTGATGGCTGCAATATCGGCGGACGG
ATGGGACATCCGGCTGATCAATCATCCCGCCAACAGCCCGGACACTAACG
TCCTTGATTTGGGGCTCTTTAACTCGATCCAGTCCCTACAAGACCGCACG
ACCCCGAAAAGCGTGGATGACCTGGTCAAGGCCGTGAAGGAGGCATGGCA
AAATGATCCGCCGACCGTGCTCAACCGGATGTGGCTGAGCCTACAGGCGT
GTCTGGAGCAAATCATGCTTGCGGGTGGCGACCACAGTTACAAGTTGCCG
CATATTCGCAAGGGCAGGCTCGAAAACGCGGGTACGCTGACGAAGCCAGT
CAAGGTCACAAAAGAGACGTACAAGAAGATGATGCTTGACCATATTATCC
CGGACATCAAGAACCGGTTCCCCCGCCCTCCAACCGGCGCCAGTCCCGAA
GACAAGATTGTGTGGATGCAGCAGGACAACGCCCGTCCCCATATCATCAT
CAATGAACCAGAAGTGATGGCTGCAATATCGGCGGACGGATGGGACATCC
GGCTGATCAATCATCCCGCCAACAGCCCGGACACTAACGTCCTTGATTTG
GGGCTCTTTAACTCGATCCAGTCCCTACAAGACCGCACGACCCCGAAAAG
CGTGGATGACCTGGTCAAGGCCGTGAAGGAGGCATGGCAAAATGATCCGC
CGACCGTGCTCAACCGGATGTGGCTGAGCCTACAGGCGTGTCTGGAGCAA
ATCATGCTTGCGGGTGGCGACCACAGTTACAAGTTGCCGCATATTCGCAA
GGGCAGGCTCGAAAACGCGGGTACGCTG
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