mRNA_H-elongata_contig62284.13798.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: D7G2R4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R4_ECTSI) HSP 1 Score: 351 bits (900), Expect = 3.720e-112 Identity = 166/238 (69.75%), Postives = 195/238 (81.93%), Query Frame = 2
Query: 137 RIGATALARLSVMIGCLVAYLPHLLRSSKYRQDSSLGCVMEERDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQHPSGRGLCRKSNPKYDLFHMLWHLASGLVTLVSVHFFGANFPDMEAGGGWFRQFPVLPIVPTVLLAVSALANLIGNYLGVMPLD 850
R+G+ LAR+ IG LVA LPHLLRSSKYR+D LGC++E D+RRP++DMLVWTS VY LP+VYGL HQYG+AGLQ+MTT+GS+LFHLTRETKFFNLDNVFATSLL T W LYL V G+WWYVV +GLGGP AI IV CGMPGLVC+HP+G GLCR+SNP+YD FHMLWHL+SGL TL+++HFF FP EAGGGWF FP +P+VPTV LA+SAL NL GN +GVMPL+
Sbjct: 141 RLGSMTLARVFATIGSLVACLPHLLRSSKYRRDRGLGCLLETGDKRRPLTDMLVWTSFVYCLPSVYGLYAHQYGIAGLQLMTTIGSTLFHLTRETKFFNLDNVFATSLLSTTAWSLYLGVTH-GVWWYVVVIGLGGPFAIFCIVRCGMPGLVCRHPAGSGLCRRSNPEYDFFHMLWHLSSGLGTLITIHFFEVYFPAEEAGGGWFYFFPDVPVVPTVALALSALINLYGNRVGVMPLE 377
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A835Z7G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G3_9STRA) HSP 1 Score: 243 bits (619), Expect = 4.470e-70 Identity = 122/229 (53.28%), Postives = 156/229 (68.12%), Query Frame = 2
Query: 167 SVMIGCLVAYLPHLLRSSKYRQDSSLGCVMEERDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQHPSGRGLCRK-SNPKYDLFHMLWHLASGLVTLVSVHFFGANFPDMEAGGGWFRQFPVLPIVPTVLLAVSALANLIGNYLGVMPLD 850
+ ++G A P+LLRSS+YR+D L C + RD RR + D LVWTSLVY +PA+YG+ HQYG+A LQ TTVGS+LFH RET++FNLDNV A +LL T W L LA A +W + V G PLA F+V CGMPG+VC PSG G R+ SNP YD +HMLWHL SG T+ S+HFF + +P ++AGGG F FP +P+VP V L +SA N+ GN+ G +PL
Sbjct: 186 AALLGLGCALSPYLLRSSRYRRDPRLRCRLGRRDVRRRLRDPLVWTSLVYAVPALYGVAAHQYGVAALQAATTVGSTLFHRARETRYFNLDNVGALALLFTTAWSLALAAR-ARVWAHAAVVLAGTPLAGYFMVACGMPGVVCACPSGDGTLRRASNPLYDHYHMLWHLVSGFGTIASIHFFASRYPHLDAGGGHFEHFPDVPVVPFVSLLLSAAVNVYGNWAGALPLS 413
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A7S2XVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVH3_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.900e-54 Identity = 106/231 (45.89%), Postives = 144/231 (62.34%), Query Frame = 2
Query: 158 ARLSVMIGCLVAYLPHLLRSSKYRQDSSLGCVMEERDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAV-MDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQHPSGRGLCRKSNPKYDLFHMLWHLASGLVTLVSVHFFGANFPDMEAGGGWFRQFPVLPIVPTVLLAVSALANLIGNYLGVMPL 847
ARL + L +P+L ++S R D S G + +++RR +D LV+TSL YM +Y V QYG+A LQ+ T++GS+L+HLTRET FFN DN+ ATSLLL T +GLYL++ +D G + + G PL + CGMPG VC+ G+ C P + H WH+AS T++SV+FF NFPD EAG GWF + P LPI PT+ + +S + N IGN GVMPL
Sbjct: 83 ARLVTLFSILFMGIPYLAKASPLRSDPSRGIKLSPKEKRRSFADPLVFTSLFYMFAGIYAFSVGQYGIALLQIYTSMGSTLYHLTRETMFFNCDNIGATSLLLLTAYGLYLSLGIDLG---WTILAAAGIPLGGAILHKCGMPGEVCK---GKRTCCSEYPSW---HSAWHVASSFGTVISVYFFEKNFPDHEAGAGWFAEMPFLPIAPTIAVVISVVQNFIGNKAGVMPL 304
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A7S1XWR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWR7_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.220e-35 Identity = 90/242 (37.19%), Postives = 132/242 (54.55%), Query Frame = 2
Query: 140 IGATALARLSVMIGCLVAYLPHLLRSSKYRQD-SSLG---CVMEERDRRRPMSDMLVWTSLV-YMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQHPSGRGLCRKSNPKYDLFHMLWHLASGLVTLVSVHFFGANFPDMEAGGGWFRQFPVLPIVPTVLLAVSALANLIGNYLGVMPLD 850
+G AR++ L+ LP+L R+S YR+D G C++ D R + D+ VW+S V + PA+Y + Q+ L LQ+ + S L+HL+RET FFN+DNVF SL + LA D G+ WYV+ L P+A +V C PG+V + G R ++ +YD +H +WH ASG+VTL++ +F P+ E G G FP V + +S NL+GN GVMP+D
Sbjct: 17 LGLVRTARVAAGATALLPLLPYLGRASVYREDPGGRGQGFCLLRPEDCWRSVGDVQVWSSWVCFGGPALYSFLSAQWSLGALQLGAAITSGLYHLSRETLFFNVDNVFGLSLGCTVFVAVKLA-WDRGVMWYVIVNVLVLPVAGFLLVYCDFPGVVVR--QGEKARRLAHERYDFWHAVWHAASGVVTLLNTYFLVTYVPESECGAGMEPWFPYPSTVAFWSVLLSIGVNLVGNLAGVMPVD 255
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A7S3XR67_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR67_HETAK) HSP 1 Score: 110 bits (276), Expect = 1.850e-23 Identity = 63/148 (42.57%), Postives = 89/148 (60.14%), Query Frame = 2
Query: 155 LARLSVMIGCLVAYLPHLLRSSKYRQDSSLGCVMEERDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQ 598
LA L+ M L+ LP+LL+ S R+D S+G + E D RP+SD LV+TSL+Y LP +Y L + L L + T+ GS++FHLTRET FFN DN+ A +L+L +G YL++ IW GL P+ + CGMPG + +
Sbjct: 90 LAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGL--PIGAFLLAYCGMPGELAE 235
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A7S3HNL6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNL6_9STRA) HSP 1 Score: 110 bits (276), Expect = 2.810e-23 Identity = 81/234 (34.62%), Postives = 122/234 (52.14%), Query Frame = 2
Query: 191 AYLPHLLRSSKYRQDSSLGCVMEERDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPG-----------LVCQHPSGRGLCRKSNPKYDLFHMLWHLASGLVTLVSV---HFFGANFPDMEAGGGWFRQFPVLPIVPTVLLAVSALANLIGNYLGVMPLD 850
A+ P+L + SK+R+ S +G V R +D L+ TS Y+L AV+ Q+ +A + +T +GSSL+H RE +FFNLDN+FATSLL V+ L + I++ + +GL P A+ IV CGMP +VC +GR L YD H LWHLAS + ++V HF + + ++ +P + L++S AN+ GN G+MPL+
Sbjct: 74 AFFPYLRKPSKHRR-SFVGSV------DRNWNDQLMTTSSSYLLSAVFAFSYGQFEIALICFITYIGSSLYHRHREMEFFNLDNIFATSLLFTCVYTLVSSYFTHEIYFIIGLMGL--PTAMFLIVYCGMPADIRFKDIPGLEVVCCVRTGREL-------YDTVHALWHLASSVGPCMAVWYFHFKANEYDKTDMSDLNKLDDQIISRLPYLALSLSIFANIAGNIDGIMPLE 291
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A1V9YIV5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YIV5_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.700e-8 Identity = 47/158 (29.75%), Postives = 74/158 (46.84%), Query Frame = 2
Query: 263 RDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQHPSGRGLCRKSNPKYDLFHMLWHLASGLVTLVSVHFFGANFPDMEA 736
R R +D L+ T+LVY+L A+ V QY A LQ+ +++ S+LFH +RETKF LD + + +L + + + L ++ + + L G + CGMPG +Y+++H WH SG TL PD +A
Sbjct: 17 RHNTRAWTDPLLLTNLVYVLAAIVSYCVGQYTCAILQLGSSIASTLFHRSRETKFLPLDALISGTLGIIAGY-VVLDAIENELHHVIGLKMLHGAGCAFTWIYCGMPG---------------GARYEIWHRRWHFVSGYTTLSCSLLMSVYHPDFDA 158
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Match: A0A067CNL8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNL8_SAPPC) HSP 1 Score: 61.2 bits (147), Expect = 3.220e-7 Identity = 45/158 (28.48%), Postives = 72/158 (45.57%), Query Frame = 2
Query: 263 RDRRRPMSDMLVWTSLVYMLPAVYGLIVHQYGLAGLQMMTTVGSSLFHLTRETKFFNLDNVFATSLLLATVWGLYLAVMDAGIWWYVVTVGLGGPLAIIFIVLCGMPGLVCQHPSGRGLCRKSNPKYDLFHMLWHLASGLVTLVSVHFFGANFPDMEA 736
R RP +D L+ T+LVY+ AV V QY LQ+ +++ S++FH +RETK+ LD + + +L + + + L ++ + + L G + CGMPG +Y+ +H WH SG TL PD +A
Sbjct: 17 RHNTRPWTDPLLLTNLVYVAAAVVSYAVGQYTCGLLQLGSSIASTMFHRSRETKYLPLDAIISGTLGIIAAY-VVLDAIENELHHVLGLKLLHGAGCAFTWIYCGMPG---------------GARYETWHKRWHYVSGYTTLSCSLLMSVYHPDFDA 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62284.13798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62284.13798.1 >prot_H-elongata_contig62284.13798.1 ID=prot_H-elongata_contig62284.13798.1|Name=mRNA_H-elongata_contig62284.13798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp MIGCLVAYLPHLLRSSKYRQDSSLGCVMEERDRRRPMSDMLVWTSLVYMLback to top mRNA from alignment at H-elongata_contig62284:2..2737+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62284.13798.1 ID=mRNA_H-elongata_contig62284.13798.1|Name=mRNA_H-elongata_contig62284.13798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2736bp|location=Sequence derived from alignment at H-elongata_contig62284:2..2737+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62284:2..2737+ >mRNA_H-elongata_contig62284.13798.1 ID=mRNA_H-elongata_contig62284.13798.1|Name=mRNA_H-elongata_contig62284.13798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig62284:2..2737+ (Himanthalia elongata Himel1 dioecious)back to top |