mRNA_H-elongata_contig62226.13792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62226.13792.1
Unique NamemRNA_H-elongata_contig62226.13792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62226.13792.1 vs. uniprot
Match: K0SL39_THAOC (C3H1-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL39_THAOC)

HSP 1 Score: 50.1 bits (118), Expect = 2.280e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGSSCK 102
            +K Y L  + G+GPK CAFF SE GCRNGS+CK
Sbjct:   16 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 48
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BLAST of mRNA_H-elongata_contig62226.13792.1 vs. uniprot
Match: K0RUK2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUK2_THAOC)

HSP 1 Score: 50.1 bits (118), Expect = 4.390e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 SKRYLLVKAEGEGPKTCAFFSSEAGCRNGSSCK 102
            +K Y L  + G+GPK CAFF SE GCRNGS+CK
Sbjct:    4 TKGYKLTSSSGDGPKVCAFFFSEQGCRNGSNCK 36
[Close]
BLAST of mRNA_H-elongata_contig62226.13792.1 vs. uniprot
Match: B8CCE8_THAPS (C3H1-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCE8_THAPS)

HSP 1 Score: 49.7 bits (117), Expect = 6.720e-6
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGSSCK 102
            M K Y L  A+G+GPK CAFF S+ GCRNG+ CK
Sbjct:    1 MGKGYKLTSADGDGPKQCAFFFSDKGCRNGAVCK 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62226.13792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
K0SL39_THAOC2.280e-763.64C3H1-type domain-containing protein (Fragment) n=1... [more]
K0RUK2_THAOC4.390e-763.64Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8CCE8_THAPS6.720e-661.76C3H1-type domain-containing protein n=1 Tax=Thalas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62226contigH-elongata_contig62226:2346..2447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.7193458-CDS-H-elongata_contig62226:2345..24471622931003.7193458-CDS-H-elongata_contig62226:2345..2447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62226 2346..2447 +
1691679658.4041932-CDS-H-elongata_contig62226:2345..24471691679658.4041932-CDS-H-elongata_contig62226:2345..2447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62226 2346..2447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62226.13792.1prot_H-elongata_contig62226.13792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62226 2346..2447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62226.13792.1

>prot_H-elongata_contig62226.13792.1 ID=prot_H-elongata_contig62226.13792.1|Name=mRNA_H-elongata_contig62226.13792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
MSKRYLLVKAEGEGPKTCAFFSSEAGCRNGSSCK
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mRNA from alignment at H-elongata_contig62226:2346..2447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62226.13792.1 ID=mRNA_H-elongata_contig62226.13792.1|Name=mRNA_H-elongata_contig62226.13792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at H-elongata_contig62226:2346..2447+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAAGCGATACCTCCTCGTCAAGGCCGAAGGTGAGGGGCCGAAGAC
CTGCGCCTTCTTCTCATCCGAGGCAGGTTGCAGGAATGGTTCTAGCTGTA
AA
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Coding sequence (CDS) from alignment at H-elongata_contig62226:2346..2447+

>mRNA_H-elongata_contig62226.13792.1 ID=mRNA_H-elongata_contig62226.13792.1|Name=mRNA_H-elongata_contig62226.13792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig62226:2346..2447+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAAGCGATACCTCCTCGTCAAGGCCGAAGGTGAGGGGCCGAAGAC
CTGCGCCTTCTTCTCATCCGAGGCAGGTTGCAGGAATGGTTCTAGCTGTA
AAATGTCGAAGCGATACCTCCTCGTCAAGGCCGAAGGTGAGGGGCCGAAG
ACCTGCGCCTTCTTCTCATCCGAGGCAGGTTGCAGGAATGGTTCTAGCTG
TAAA
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