mRNA_H-elongata_contig62177.13786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62177.13786.1
Unique NamemRNA_H-elongata_contig62177.13786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 1.150e-93
Identity = 164/254 (64.57%), Postives = 190/254 (74.80%), Query Frame = 1 
Query:    1 FTPQVAFLTDAKAFGGCYPSALMALTIKQWGTVIGRVRRVLVPHLLYEPRRRDKYRAKVAALALDPAVQGIVYCGIFMFMPLSNALLPLLLKESVYLIWVAKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLGRRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGP---EGSEVTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLKV 753
            F   VA+L D+  FGG Y +AL  LT+KQWGTV+GRVRRVLVPHL+YEP+R  KYRA+V+ALALDPAVQGIVYCGIFM MPLS AL+PLLLKESVYL+WV KE  QI AP GLVET+ +  E  +SV MTAGD  KWR+TP  EKRLLLGRRLAQA         CFKLEM MPF   LRVLP V+  +LG GGG    EG+E  A+G G  G + + LP+ K  V++MAYVKLL VKN QLEDDVR+L GLK+
Sbjct:  307 FMSAVAYLMDSTKFGGSYQAALAVLTLKQWGTVVGRVRRVLVPHLIYEPQRYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAP-GLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQA---------CFKLEMVMPFGVALRVLPAVLQTSLGAGGGVADGEGAEGAAAGAG--GQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKI 548
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BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Match: A0A6H5KS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS72_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.930e-72
Identity = 132/204 (64.71%), Postives = 151/204 (74.02%), Query Frame = 1 
Query:  151 RRDKYRAKVAALALDPAVQGIVYCGIFMFMPLSNALLPLLLKESVYLIWVAKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLGRRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGP---EGSEVTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLKV 753
            R  KYRA+V+ALALDPAVQGIVYCGIFM MPLS AL+PLLLKESVYL+WV KE  QI AP GLVET+ +  E  +SV MTAGD  KWR+TP  EKRLLLGRRLAQA         CFKLEM MPF   LRVLP V+ A+LG GG     EG+E  A+G G  G + ++LP+ K  V++MAYVKLL VKN QLEDDVR+L GLKV
Sbjct:   16 RYVKYRARVSALALDPAVQGIVYCGIFMLMPLSLALIPLLLKESVYLLWVMKEALQITAP-GLVETLTTLSEPLMSVFMTAGDSEKWRDTPAGEKRLLLGRRLAQA---------CFKLEMVMPFGVALRVLPAVLQASLGAGGSVADGEGAEGAAAGAG--GQLGRVLPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKV 207
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BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.470e-29
Identity = 89/236 (37.71%), Postives = 125/236 (52.97%), Query Frame = 1 
Query:   52 YPSALMALTIKQWGTVIGRVRRVLVPHLLYEPRRRDKYRAKVAALALDPAVQGIVYCGIFMFM--PLSNALLPLLLKESVYLIWVAKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLGRRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGPEGSEVTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLKV 753
            Y  AL+AL IK W  V+GR+RR LVP L  EP +   +RA+  ALA DPAVQ  ++C + +    PLS AL PL L+E  YL  VA+EV  I AP  L   + + +  P +V++  GDV  WR   +  + + +GRR++QA         CFKLE+A   +ALLR  P  + A                         ++     F + + AY +LL+V++ QL  DVRVL GLK+
Sbjct:   89 YQGALLALIIKYWCVVLGRMRRTLVPGLAREPGKFGLFRARARALARDPAVQTSLFCALALTRQPPLSAALAPLALREGAYLFLVAREVVSIAAPRAL-PALGALVRWPAAVLVAKGDVRAWRAMGEGAQLVEVGRRVSQA---------CFKLEVAALGAALLRDYPRAMKAD-----------------------NKLAAAAAFALYIGAYAQLLSVRHAQLGGDVRVLSGLKL 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62177.13786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSM7_ECTSI1.150e-9364.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS72_9PHAE2.930e-7264.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJH6_9STRA3.470e-2937.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62177contigH-elongata_contig62177:614..3340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size753
Cds size753
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62177.13786.1prot_H-elongata_contig62177.13786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62177 614..3340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.163144-CDS-H-elongata_contig62177:613..7651622931003.163144-CDS-H-elongata_contig62177:613..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 614..765 +
1691679658.183172-CDS-H-elongata_contig62177:613..7651691679658.183172-CDS-H-elongata_contig62177:613..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 614..765 +
1622931003.1872551-CDS-H-elongata_contig62177:1643..18221622931003.1872551-CDS-H-elongata_contig62177:1643..1822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 1644..1822 +
1691679658.1922245-CDS-H-elongata_contig62177:1643..18221691679658.1922245-CDS-H-elongata_contig62177:1643..1822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 1644..1822 +
1622931003.2053099-CDS-H-elongata_contig62177:2532..26931622931003.2053099-CDS-H-elongata_contig62177:2532..2693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 2533..2693 +
1691679658.2074149-CDS-H-elongata_contig62177:2532..26931691679658.2074149-CDS-H-elongata_contig62177:2532..2693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 2533..2693 +
1622931003.2256234-CDS-H-elongata_contig62177:3079..33401622931003.2256234-CDS-H-elongata_contig62177:3079..3340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 3080..3340 +
1691679658.2197978-CDS-H-elongata_contig62177:3079..33401691679658.2197978-CDS-H-elongata_contig62177:3079..3340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62177 3080..3340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62177.13786.1

>prot_H-elongata_contig62177.13786.1 ID=prot_H-elongata_contig62177.13786.1|Name=mRNA_H-elongata_contig62177.13786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
FTPQVAFLTDAKAFGGCYPSALMALTIKQWGTVIGRVRRVLVPHLLYEPR
RRDKYRAKVAALALDPAVQGIVYCGIFMFMPLSNALLPLLLKESVYLIWV
AKEVFQILAPAGLVETMASALETPLSVVMTAGDVGKWRETPQPEKRLLLG
RRLAQARHDAMPPGVCFKLEMAMPFSALLRVLPGVVHATLGGGGGPEGSE
VTASGRGVVGMIAQMLPVTKFFVIMMAYVKLLTVKNRQLEDDVRVLKGLK
V
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mRNA from alignment at H-elongata_contig62177:614..3340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62177.13786.1 ID=mRNA_H-elongata_contig62177.13786.1|Name=mRNA_H-elongata_contig62177.13786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2727bp|location=Sequence derived from alignment at H-elongata_contig62177:614..3340+ (Himanthalia elongata Himel1 dioecious)
TTCACGCCCCAGGTGGCGTTCCTGACGGACGCCAAAGCGTTCGGGGGCTG
TTACCCCAGCGCCCTGATGGCGCTCACGATCAAGCAGTGGGGAACCGTGA
TCGGGCGGGTGCGGAGGGTGCTGGTGCCACATCTCCTCTACGAGCCGCGA
AGGTGTCGCGCGCGTTCCTTTTGTGGCCGAAGCCGTTGTTTGTTTTTCCC
CGCGCAATCGATGAGAAGAGGCTTTAAATATTTTTAGCGATTGGTACGCC
CCCGCCCCTCCTCCTCGCTCTGTATTCGAGACGAAGGCTTCCCGCGCGTT
CTTTTTGATCTAGACGGTGAAGGCAGCACAGCTCTGTGTGTGTGTGTGTG
TGTGTGTGTGTGCTGGGCAAGATGCGCGCCTCCTTGAGGCTTTCCGAATA
TTTTATTATATATATATATATATATATATATATATATATATATATATGTA
TATATATATTTGTACTGATATCTTACTGGTGCAGAGCGCGTGCTGATTTT
ATTTTATTTTTTCCATGATGCGCCTTTGGCTGGATAACCCGTTACATGCT
TGGTGCGGCGAGGAAGATAATGGAAGGGGTCCTCGATGTGTTTCAGACCT
AAAGGGGCACGCGCGGATTGTGCGTGTCAGAGGTTAGGCCGGGTCTTATC
GGAATACATTTTTTTTAATTTCTAGCCGTTTTAAATTTAAATTGTGCTCT
GATTGGACAAAGGCTAGGCGTTATTTGCTTTCGACCAATCAGAGCCCGAT
TTAAATTTAAATCGGCTGGAAATTTAACTTTTTGTGCTCTGATAAGACCC
GGCCTTATCACAGGGTTCTTATCGTGTTTAGCTGTTGGTATATGGTTGGG
GCTCAATCAGATAACTGTAACTGTAAGAGTATATCACATATATACAATAT
ATACAAAATATACATACCGTCGAAAAATCTGCAACATCGTGCGCTGCTAA
TTATAGTACCTTAAAACTATTGAACCCCGCCCCCAATCACGTTGTGGCCA
CGCACCCTCGCTGATTCACTTTTTCGACAGGCGCGATAAGTACCGAGCAA
AGGTAGCGGCGCTGGCGCTCGACCCGGCCGTTCAGGGCATCGTGTACTGC
GGCATCTTCATGTTCATGCCTCTGAGCAACGCCCTCCTCCCGCTCTTGCT
GAAGGAGTCGGTATACCTGATTTGGGTCGCCAAAGAAGTCTTTCAGATTC
TGGCACCAGGTGAGGATGTAGGGGTGGCGGAAGCGGTACGGGGGGGGGGA
CAGGGGGAAGGTAGAATGAGGAAAGCGGGGTGATATTGTTATCTATCCCC
GTAGTTTGTGTAGGCGTTTGTATCCGTCGACGTCTAGAGAAGGGAACGGG
GTGAGAGTCATCCTTCCCCGTAAACTATGTAGGTGTTTACATGTGTCGAT
TTTTGGTGAGTGGAGGCGAGGTGGTATACAAATCGGCATTTCCATCCGCC
GACGTTTAGTGAGTGTGGGGTGGTGCTGTCATCCTCCCCTGTATTTGTGT
AGGCGTTTTTATCTGCCGACGTCTGGCGAGTACGGGGTGATTTTGTTATA
ATCCCTCCTACATGTATGTGCGTTTCTATCGTTGTATTCTGGTTAGTGTG
GGGTAGTATTGCTATCCTCCCCCGTACATGGTGTGGGCGCTCCTATCCCC
CGACGTTTTGTAAGCGGGGTGGGGTGAGACTCTTATCATACCCCATTATT
TATGTGGGCATTTCTAAGCGTCCTATTCTGAAAAGTGCGGGGTGTATTGT
TATCCTCCCCCTGTATTCCGTCGGGGCTTTCCTGTATGTCGTGTCCTTCC
TTTGTGTGCGTTTCCCCGCCTTGTAGAAGTATGATCGCTGTTTTTTTCCG
CGCGGAAAGCTTTTGGCGAGTGTGATCGAGCCTCCCTCGTGCTGCTTGGC
ATTTTCCGGTTTGTGTGAGCAGGGTTGGTGGAGACCATGGCTTCCGCGTT
GGAGACGCCGCTCAGCGTCGTGATGACGGCGGGGGACGTGGGCAAGTGGA
GGGAGACGCCGCAGCCCGAGAAGCGTCTCTTGCTTGGCAGGCGCTTGGCT
CAGGCACGACACGATGCGATGCCACCCGGGGTCGTCGACGGAAGCGGAGT
CTATGAAAACAGCATTCGTTTAATTGTCTCTTTGTATGATGTGCACTTTT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTAATATATTTAGCAGAGGACATCTATAAAGCAACACAAAAACATGAT
TTTCCCATTGTGAGCCGTGCAAAAATATATTTCACGAAGCGCGCGAAGTA
ATATTATACACGCCAGTCAGAGCTTCGCCGCCGCGTTTTTCGCATGTTAC
GAGCACGCGGAGGCGTTCCTTCCTTGGTGACCAGAGACCGCGACCGGGTT
CCCGTGAAAAACGTAGGACTTTCTGTCCGCCCATCCGTGTGGTGTTATCT
CCGCCACCGCGGGCAGGTGTGCTTCAAGCTGGAGATGGCGATGCCGTTCA
GCGCTCTCCTTCGCGTCTTACCGGGTGTCGTGCACGCCACCCTGGGAGGG
GGAGGTGGACCGGAGGGGAGCGAGGTGACGGCATCCGGAAGAGGGGTGGT
CGGGATGATCGCGCAGATGCTTCCCGTGACGAAATTCTTCGTGATTATGA
TGGCCTACGTTAAGCTGCTCACAGTCAAAAACCGGCAACTTGAAGACGAC
GTCCGGGTGCTGAAGGGTCTGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig62177:614..3340+

>mRNA_H-elongata_contig62177.13786.1 ID=mRNA_H-elongata_contig62177.13786.1|Name=mRNA_H-elongata_contig62177.13786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig62177:614..3340+ (Himanthalia elongata Himel1 dioecious)
TTCACGCCCCAGGTGGCGTTCCTGACGGACGCCAAAGCGTTCGGGGGCTG
TTACCCCAGCGCCCTGATGGCGCTCACGATCAAGCAGTGGGGAACCGTGA
TCGGGCGGGTGCGGAGGGTGCTGGTGCCACATCTCCTCTACGAGCCGCGA
AGTTCACGCCCCAGGTGGCGTTCCTGACGGACGCCAAAGCGTTCGGGGGC
TGTTACCCCAGCGCCCTGATGGCGCTCACGATCAAGCAGTGGGGAACCGT
GATCGGGCGGGTGCGGAGGGTGCTGGTGCCACATCTCCTCTACGAGCCGC
GAAGGCGCGATAAGTACCGAGCAAAGGTAGCGGCGCTGGCGCTCGACCCG
GCCGTTCAGGGCATCGTGTACTGCGGCATCTTCATGTTCATGCCTCTGAG
CAACGCCCTCCTCCCGCTCTTGCTGAAGGAGTCGGTATACCTGATTTGGG
TCGCCAAAGAAGTCTTTCAGATTCTGGCACCAGGCGCGATAAGTACCGAG
CAAAGGTAGCGGCGCTGGCGCTCGACCCGGCCGTTCAGGGCATCGTGTAC
TGCGGCATCTTCATGTTCATGCCTCTGAGCAACGCCCTCCTCCCGCTCTT
GCTGAAGGAGTCGGTATACCTGATTTGGGTCGCCAAAGAAGTCTTTCAGA
TTCTGGCACCAGCAGGGTTGGTGGAGACCATGGCTTCCGCGTTGGAGACG
CCGCTCAGCGTCGTGATGACGGCGGGGGACGTGGGCAAGTGGAGGGAGAC
GCCGCAGCCCGAGAAGCGTCTCTTGCTTGGCAGGCGCTTGGCTCAGGCAC
GACACGATGCGATGCCACCCGGGCAGGGTTGGTGGAGACCATGGCTTCCG
CGTTGGAGACGCCGCTCAGCGTCGTGATGACGGCGGGGGACGTGGGCAAG
TGGAGGGAGACGCCGCAGCCCGAGAAGCGTCTCTTGCTTGGCAGGCGCTT
GGCTCAGGCACGACACGATGCGATGCCACCCGGGGTGTGCTTCAAGCTGG
AGATGGCGATGCCGTTCAGCGCTCTCCTTCGCGTCTTACCGGGTGTCGTG
CACGCCACCCTGGGAGGGGGAGGTGGACCGGAGGGGAGCGAGGTGACGGC
ATCCGGAAGAGGGGTGGTCGGGATGATCGCGCAGATGCTTCCCGTGACGA
AATTCTTCGTGATTATGATGGCCTACGTTAAGCTGCTCACAGTCAAAAAC
CGGCAACTTGAAGACGACGTCCGGGTGCTGAAGGGTCTGAAGGTGGTGTG
CTTCAAGCTGGAGATGGCGATGCCGTTCAGCGCTCTCCTTCGCGTCTTAC
CGGGTGTCGTGCACGCCACCCTGGGAGGGGGAGGTGGACCGGAGGGGAGC
GAGGTGACGGCATCCGGAAGAGGGGTGGTCGGGATGATCGCGCAGATGCT
TCCCGTGACGAAATTCTTCGTGATTATGATGGCCTACGTTAAGCTGCTCA
CAGTCAAAAACCGGCAACTTGAAGACGACGTCCGGGTGCTGAAGGGTCTG
AAGGTG
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