mRNA_H-elongata_contig62127.13776.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62127.13776.1
Unique NamemRNA_H-elongata_contig62127.13776.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.600e-39
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    4 EPAKLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQAR 255
            EPAKLAAVVYTYVDGM++KR P+R+DHL LLK MTEEG CLLGGA++EPCDGA LLFS+P +A +FV KDPYNT GLV  YQ R
Sbjct:   89 EPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQIR 172          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.160e-23
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   10 AKLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQAR 255
            ++L  + YTYV+GMLEKR PHR  HL +L  +T++G C+LGGA++ P DGA LLF   A A  F  +DPY+ AGL+  +  R
Sbjct:    1 SQLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIR 82          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: A0A6S9EHW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EHW5_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 9.710e-21
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 AEPAKLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQARA 258
            A P KL AV YTYV+ M E+R   R+ HL L+K     G C++GGA++EP DG FLLF     A +FV +DPY  AGLV  +  RA
Sbjct:   48 ALPKKLFAVRYTYVENMEERRGAVRAPHLELIKEYEAAGTCVMGGAFIEPVDGGFLLFETEEAAREFVSRDPYVEAGLVPHHDIRA 133          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: UPI00196B6146 (YciI family protein n=1 Tax=Conexibacter sp. SYSU D00693 TaxID=2812560 RepID=UPI00196B6146)

HSP 1 Score: 77.0 bits (188), Expect = 1.140e-16
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   13 KLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQ 249
            +LAA+ YTYV+ +LE+R PHR  HLA+L+ + + G  ++ G   +P  GA ++F +P  A  FV +DPY  AG+V S++
Sbjct:    3 RLAALHYTYVEDVLERREPHREAHLAILRELKDAGELVMAGPVGDPPAGALIVFRSPEAAQAFVARDPYVEAGIVTSHR 81          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: A0A7C2CG74_9BACT (YCII domain-containing protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C2CG74_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   22 AVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLF--SNPAEANKFVGKDPYNTAGLVKSYQAR 255
            A++Y  V+G +E+RAP R++HLAL++    EG  LL GA+ +P DGA L+F   +PAE  +FV  DPY   GL+ SY+ R
Sbjct:    4 ALLYETVEGFIERRAPFRAEHLALVERWHREGRLLLAGAF-DPADGALLVFRVEDPAEVEEFVRSDPYVRQGLIPSYRVR 82          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: A0A7S0EWB9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWB9_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 7.010e-16
Identity = 38/81 (46.91%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   16 LAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAE-ANKFVGKDPYNTAGLVKSYQAR 255
            L  ++YTY D  LEKRAPHRS HLA  +   + G  LLGGA  +P DG  LLF+   E A  F   DPY   G+V  +  R
Sbjct:    1 LHLLLYTYTDNALEKRAPHRSAHLAAARAAEQRGQLLLGGALADPLDGGVLLFAGGREVAEAFATSDPYTQNGIVTDWTVR 81          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: L8HGR4_ACACA (YCIIrelated domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGR4_ACACA)

HSP 1 Score: 75.9 bits (185), Expect = 2.550e-15
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   13 KLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAE-ANKFVGKDPYNTAGLVKSYQAR 255
            KL A++YTYVDG+LEKRAPHR+ HLA +K   ++G  + GGA+ +   G  +L ++ A+  ++F   DPY  AGLV  ++ R
Sbjct:   78 KLHALMYTYVDGILEKRAPHRAAHLAYVKQYEDDGRLVAGGAWEDASGGLIVLRTDTADDVHRFAHDDPYVKAGLVTRHEVR 159          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: K8YRS6_NANGC (YCII domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRS6_NANGC)

HSP 1 Score: 73.9 bits (180), Expect = 3.140e-15
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    7 PAKLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQAR 255
            P  L  + Y YV+ +L++R PHR++HLA L    +EG+ +LGGA  +P D   L+F++ + A  F   D Y  AGLVK +Q R
Sbjct:   17 PTTLWLLQYHYVNDILDRRGPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKEWQVR 99          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: A0A4D9CUP2_9STRA (YCII domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUP2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.210e-15
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    7 PAKLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQAR 255
            P  L  + Y YV+ +L++R PHR++HLA L    +EG+ +LGGA  +P D   L+F++ + A  F   D Y  AGLVK +Q R
Sbjct:   51 PTTLWLLQYHYVNDILDRRGPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKEWQVR 133          
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Match: A0A328X5P7_9BURK (YCII domain-containing protein n=1 Tax=Paraburkholderia unamae TaxID=219649 RepID=A0A328X5P7_9BURK)

HSP 1 Score: 71.2 bits (173), Expect = 2.720e-14
Identity = 39/79 (49.37%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   25 VVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEPCDGAFLLFS--NPAEANKFVGKDPYNTAGLVKSYQAR 255
            ++Y   D  LE+RA HRS HLAL       G  LL GA  EP D A LLF   +PA A  F   DPY  AGLVKS++ R
Sbjct:    5 LMYELTDDYLERRAEHRSAHLALAWAAAGRGELLLAGAIAEPVDNALLLFQGDSPAAAEAFARADPYVLAGLVKSWRVR 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62127.13776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ2_ECTSI1.600e-3975.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJU7_9STRA2.160e-2350.00YCII domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6S9EHW5_HETAK9.710e-2150.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI00196B61461.140e-1643.04YciI family protein n=1 Tax=Conexibacter sp. SYSU ... [more]
A0A7C2CG74_9BACT1.800e-1647.50YCII domain-containing protein n=1 Tax=Blastocatel... [more]
A0A7S0EWB9_9EUKA7.010e-1646.91Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
L8HGR4_ACACA2.550e-1545.12YCIIrelated domain containing protein n=1 Tax=Acan... [more]
K8YRS6_NANGC3.140e-1542.17YCII domain-containing protein n=1 Tax=Nannochloro... [more]
A0A4D9CUP2_9STRA7.210e-1542.17YCII domain-containing protein n=2 Tax=Monodopsida... [more]
A0A328X5P7_9BURK2.720e-1449.37YCII domain-containing protein n=1 Tax=Paraburkhol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62127contigH-elongata_contig62127:352..1108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog2880.D8LEJ2
EggNOG free text desc.YCII-related domain
EggNOG OGs2DZF9@1,2S6ZJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-21_004450.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.302266-CDS-H-elongata_contig62127:351..4811622931002.302266-CDS-H-elongata_contig62127:351..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 352..481 +
1691679657.8770547-CDS-H-elongata_contig62127:351..4811691679657.8770547-CDS-H-elongata_contig62127:351..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 352..481 +
1622931002.3150625-CDS-H-elongata_contig62127:980..11081622931002.3150625-CDS-H-elongata_contig62127:980..1108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 981..1108 +
1691679657.8892949-CDS-H-elongata_contig62127:980..11081691679657.8892949-CDS-H-elongata_contig62127:980..1108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62127 981..1108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62127.13776.1prot_H-elongata_contig62127.13776.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62127 352..1108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62127.13776.1

>prot_H-elongata_contig62127.13776.1 ID=prot_H-elongata_contig62127.13776.1|Name=mRNA_H-elongata_contig62127.13776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
AEPAKLAAVVYTYVDGMLEKRAPHRSDHLALLKTMTEEGACLLGGAYVEP
CDGAFLLFSNPAEANKFVGKDPYNTAGLVKSYQARA
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mRNA from alignment at H-elongata_contig62127:352..1108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62127.13776.1 ID=mRNA_H-elongata_contig62127.13776.1|Name=mRNA_H-elongata_contig62127.13776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=757bp|location=Sequence derived from alignment at H-elongata_contig62127:352..1108+ (Himanthalia elongata Himel1 dioecious)
GCGGAACCCGCAAAACTGGCCGCGGTCGTGTACACATACGTGGATGGCAT GCTGGAGAAGCGCGCGCCTCATCGCTCCGACCACCTCGCGCTGCTGAAAA CAATGACCGAGGAGGGCGCCTGCCTTTTAGGTGAGAAAAAGGACGCTGTT GAGTTCCCAAAGTATTTGAGTCCCCCAGAGCTTCACTTGGAGCGAGACGT CAATGTACGCGATGGTGTTGTCGAATTCACTTGACTAAATAGCTCACTAT AATATGAAATGACGGGGATTAGTCTTCAGCATGGTATGTTACGCCACAGG GAGGATTGATGGCTTTCCATTGAGGGGGGATAACGCGCACCTGATGACCT GAGGTGAAACTGTTGGGACACGCAACGCAGGGGACCGTCGTATTGCACCC ACCGGAGGCATGCGATATAATTTTCGCGATGAATGCGTTCTTACGTTTGA TTGCGTCATCGCCGCCGTTGTACAACCCGCATCACTTAAGGGAGGAACCG AAGTTTCAGATCTCGTAGACACCCGCAGGACATCTGTTCTCACTTTGTTC CCTTTGTGGTCTTCCTCGATCGACGTTTCATTTCCTGTTCGACGGTTGAT GACAACTAATGCGTGCTCGTTCTTGAAAGGGGGTGCATACGTGGAACCTT GTGATGGAGCGTTCCTCTTATTCTCCAATCCAGCTGAGGCAAATAAATTC GTGGGAAAGGACCCCTACAACACGGCCGGACTTGTCAAGAGTTACCAGGC ACGTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig62127:352..1108+

>mRNA_H-elongata_contig62127.13776.1 ID=mRNA_H-elongata_contig62127.13776.1|Name=mRNA_H-elongata_contig62127.13776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig62127:352..1108+ (Himanthalia elongata Himel1 dioecious)
GCGGAACCCGCAAAACTGGCCGCGGTCGTGTACACATACGTGGATGGCAT
GCTGGAGAAGCGCGCGCCTCATCGCTCCGACCACCTCGCGCTGCTGAAAA
CAATGACCGAGGAGGGCGCCTGCCTTTTAGGCGGAACCCGCAAAACTGGC
CGCGGTCGTGTACACATACGTGGATGGCATGCTGGAGAAGCGCGCGCCTC
ATCGCTCCGACCACCTCGCGCTGCTGAAAACAATGACCGAGGAGGGCGCC
TGCCTTTTAGGGGGTGCATACGTGGAACCTTGTGATGGAGCGTTCCTCTT
ATTCTCCAATCCAGCTGAGGCAAATAAATTCGTGGGAAAGGACCCCTACA
ACACGGCCGGACTTGTCAAGAGTTACCAGGCACGTGCTGGGGTGCATACG
TGGAACCTTGTGATGGAGCGTTCCTCTTATTCTCCAATCCAGCTGAGGCA
AATAAATTCGTGGGAAAGGACCCCTACAACACGGCCGGACTTGTCAAGAG
TTACCAGGCACGTGCT
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