mRNA_H-elongata_contig62091.13773.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI) HSP 1 Score: 131 bits (329), Expect = 2.800e-34 Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFGTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAGL 241
+TGPQF+GVKMIP GLH HFGTGEGEKQG FFRS A SVAATQWD SAEDL+ A+ CLP+GA+R LR+SVLRLEMD L
Sbjct: 40 KTGPQFKGVKMIPPGLHFTHFGTGEGEKQGIFFRSSAGSVAATQWDTSAEDLVDAQTCLPDGAVRALRESVLRLEMDKSL 119
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.100e-33 Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFGTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAGL 241
+TGPQF+GVKMIP GLH AHFGTGEGEKQG FFRS SVAATQWD SAEDL+ A+ LP+GALR LR+SVLRLEMD L
Sbjct: 35 KTGPQFQGVKMIPPGLHFAHFGTGEGEKQGIFFRSSVGSVAATQWDTSAEDLVDAQTRLPDGALRALRESVLRLEMDKSL 114
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A835YN26_9STRA (A1 cistron-splicing factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN26_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 8.800e-22 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFGTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAGL 241
QTGP F+G+KMIP GLHL ++G E E QG FF A SV WD +AEDL+H + LP+GAL L +VLR E+DA L
Sbjct: 23 QTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANL 102
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A0S7H0S7_9TELE (Protein AAR2 homolog (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7H0S7_9TELE) HSP 1 Score: 56.2 bits (134), Expect = 2.070e-8 Identity = 28/61 (45.90%), Postives = 31/61 (50.82%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHF--------GTGEGEKQGFFFRSGARSVAATQWDPSAEDLI 160
Q GP+FRGVKMIP GLH HF G G K G F R + WDP ED+I
Sbjct: 43 QVGPRFRGVKMIPPGLHFLHFCSVNSPSCGGEVGPKSGLFLTLKPREILLAHWDPKEEDVI 103
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A1Y2D178_9FUNG (AAR2-domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D178_9FUNG) HSP 1 Score: 57.4 bits (137), Expect = 8.860e-8 Identity = 30/85 (35.29%), Postives = 49/85 (57.65%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFG-----TGE-GEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAG 238
QTGP+F+G+K+IP G H H+ TG+ G + GFF ++ + TQW+ S EDL+ E+ L + + L+ +++ E G
Sbjct: 26 QTGPRFKGLKLIPPGFHFIHYSSKSTSTGDTGVRTGFFKFFASKEIYVTQWNASEEDLMEQES-LDKAQVERLKYNIMEFEPSLG 109
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A665TYK0_ECHNA (Protein AAR2 homolog n=5 Tax=Carangaria TaxID=1489904 RepID=A0A665TYK0_ECHNA) HSP 1 Score: 57.4 bits (137), Expect = 8.890e-8 Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHF--------GTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLE 226
Q GP+FRGVKMIP GLH HF G+ G K G F R + WDP EDL +++ E R +R S+ L+
Sbjct: 43 QVGPRFRGVKMIPPGLHFLHFSSVNLPSCGSEIGPKTGLFLSLKPREILVANWDPKTEDLDFSDSKNEEEVSR-IRASLQELD 124
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A4Z2FA14_9TELE (Protein AAR2 homolog n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2FA14_9TELE) HSP 1 Score: 57.4 bits (137), Expect = 8.950e-8 Identity = 35/80 (43.75%), Postives = 41/80 (51.25%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFGT-------GE-GEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALR---GLRD 208
Q GP+F+GVKMIP GLH HF + GE G K G F R + WDP EDL + + E LR GLRD
Sbjct: 35 QVGPRFKGVKMIPPGLHFLHFSSVSSPSCGGEAGPKTGLFLSLRPRDLLLATWDPEEEDLDFSASQSEEEVLRVRAGLRD 114
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A8H4A729_GIGMA (AAR2-domain-containing protein n=2 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A729_GIGMA) HSP 1 Score: 57.0 bits (136), Expect = 1.200e-7 Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFGTGE-----GEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPE 184
QTGP+F+GVK+IP GLH ++ T + G + GFF ++ V WDP+ ED+ + +PE
Sbjct: 35 QTGPRFKGVKLIPPGLHFVYYSTSDKSGISGLRNGFFKFYESKEVVIKYWDPNIEDIKRDDETVPE 100
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: H2M0R9_ORYLA (Protein AAR2 homolog n=6 Tax=Oryzias TaxID=8089 RepID=H2M0R9_ORYLA) HSP 1 Score: 57.0 bits (136), Expect = 1.220e-7 Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHF--------GTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLE 226
Q GP+FRGVKMIP GLH H+ G G K G F R + WDP+AEDL + A E L +R+++ L+
Sbjct: 42 QVGPRFRGVKMIPPGLHFLHYCSVSSINSGGEVGPKTGVFLTLKPREILLANWDPTAEDLDFS-ASKNEEELTRIRETLQELD 123
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A3P8WZ55_CYNSE (Protein AAR2 homolog n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WZ55_CYNSE) HSP 1 Score: 56.6 bits (135), Expect = 1.660e-7 Identity = 28/60 (46.67%), Postives = 33/60 (55.00%), Query Frame = 2
Query: 2 QTGPQFRGVKMIPAGLHLAHFGTGE-----GE---KQGFFFRSGARSVAATQWDPSAEDL 157
Q GP+FRG+KMIP GLH H+ G GE K GFF R + +WDP EDL
Sbjct: 35 QVGPRFRGIKMIPPGLHFLHYSAGNPSQSRGEIFLKTGFFLSLRPREILLAKWDPKEEDL 94 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62091.13773.1 >prot_H-elongata_contig62091.13773.1 ID=prot_H-elongata_contig62091.13773.1|Name=mRNA_H-elongata_contig62091.13773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp SDGAAISGRQDDSGWVALGPLRDRRGREAGFLFPERREVGGGDAVGPLRRback to top mRNA from alignment at H-elongata_contig62091:434..1559+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62091.13773.1 ID=mRNA_H-elongata_contig62091.13773.1|Name=mRNA_H-elongata_contig62091.13773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig62091:434..1559+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62091:434..1559+ >mRNA_H-elongata_contig62091.13773.1 ID=mRNA_H-elongata_contig62091.13773.1|Name=mRNA_H-elongata_contig62091.13773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig62091:434..1559+ (Himanthalia elongata Himel1 dioecious)back to top |