mRNA_H-elongata_contig6208.13771.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6208.13771.1
Unique NamemRNA_H-elongata_contig6208.13771.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: D7FI52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.150e-44
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 2
Query:    2 AHHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            AHHRPEA+AA+DDIRRLREAMQHV EMEIEL RLG+ VSGRSIELKSA+KKRLS+PTMLELLTRL+I  QPVWGLTQEERELVK AREKVNSC
Sbjct:   64 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A835YHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.640e-26
Identity = 55/92 (59.78%), Postives = 74/92 (80.43%), Query Frame = 2
Query:    5 HHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            HHRPEAVA+ +DI RL+  M+ V  ME EL++  N+++ R+IE+K  LKK LS+P M+ELL RLEI S+PVWGLTQ+ER+LV++AR KVN+C
Sbjct:   61 HHRPEAVASQEDIERLKAVMEDVMGMESELAK-ANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A835Z526_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.270e-22
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    5 HHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            HHRPEAVAAL+DI RL  A+               T++  +IE+KS LKK LS+P M+ELL RLEIN++PVWGLTQ ERE+V+ AR KVN+C
Sbjct:   35 HHRPEAVAALEDIARL-SAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A7S2R7N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.890e-16
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    2 AHHRPEAVAALDDIRRLREAMQHVFEMEIELSRL----GNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            AHH PEA+  L DIR L + M  V  +E +L+      G++V+ +SIELK+A+K+++S+  M +LL RLEIN  P WGL+ +ER+LV  AR+K N+C
Sbjct:   85 AHH-PEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A4D9CV18_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.840e-16
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    8 HRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            HRPEAVA   DI+ LR  M+ V E+E++L         + I +KSA+KK+ S   M ELL RLE+  QPVWGL+  ER+LVK AR + NSC
Sbjct:   74 HRPEAVAHAADIKSLRMLMEEVEELEVQLRSADELP--KQISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A7S4K9H6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9H6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.770e-16
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   11 RPEAVAALDDIRRLREAMQHVFEMEIELSR----LGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            RPE +A   D+ +++  MQ V  +E  L R        ++GRSIEL+S++KK + AP   E L RLEI   PVWGL+ EER+L+ AAREKVN C
Sbjct:   63 RPEMLALAADVTKIQAVMQEVETLESLLDREKEESKGEITGRSIELRSSIKKLMVAPEFTECLNRLEIQGSPVWGLSSEERDLIHAAREKVNEC 156          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A7S2IEF3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.090e-15
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 2
Query:    2 AHHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            + HRPE  A  +D+ +L   M  V  +E  L +    V+ RSIEL+ ++KK +++P +++ L RLEI  +PVWGLT EER+LVK AR KVN C
Sbjct:   65 SEHRPEMQAIAEDVTKLSSIMGEVETLE-HLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A1Z5KRA7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO)

HSP 1 Score: 80.1 bits (196), Expect = 2.030e-14
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   23 VAALDDIRRLREAMQHVFEMEIELSRLGNT-VSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            +A   D+ ++ + M  V  +E +L  L N  V+ +SIELKSA+KK ++ P++LE L RLE+  QPVWGL+ EERE++  AREKVN+C
Sbjct:   73 IALSQDVEKIEQVMTAVESLESQL--LDNAGVNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A6V1NW11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NW11_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 1.210e-13
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   14 PEAVAALDDIRRLREAMQHVFEMEIELSRLG-NTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            PEA+A  +D++ L + M   F++  +L+      VS  +I LKS L+K L++   L+L+ RLEIN  P WGL+Q+ER L+K ARE +N C
Sbjct:   24 PEALAHSEDVKALNKMMDKAFDIRDQLNNKSLQRVSAEAIALKSELRKLLTSKAALDLVNRLEINGSPKWGLSQDERSLLKEARETINKC 113          
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A6S9H6B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.210e-13
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    2 AHHRPEAVAALDDIRRLREAMQHVFEME----IELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
            + HRPE +A   D++ +   M  V  +E     E       ++ RSIEL+ ++KK +++P ++E L RLEI  +PVWGL+ +ER+LVK AR K+N C
Sbjct:   69 SEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FI52_ECTSI1.150e-4487.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHU4_9STRA3.640e-2659.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z526_9STRA5.270e-2256.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R7N6_9STRA3.890e-1647.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CV18_9STRA4.840e-1650.55Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4K9H6_9STRA5.770e-1647.87Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2IEF3_9STRA2.090e-1546.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5KRA7_FISSO2.030e-1448.28Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6V1NW11_HETAK1.210e-1343.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9H6B1_9STRA1.210e-1340.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6208contigH-elongata_contig6208:9496..10888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D7FI52
EggNOG OGs2E2F6@1,2S9NX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003570.1
Exons2
Model size1085
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6208.13771.1prot_H-elongata_contig6208.13771.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6208 9557..10086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.4223607-UTR-H-elongata_contig6208:9495..95561622931001.4223607-UTR-H-elongata_contig6208:9495..9556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6208 9496..9556 +
1691679657.4927394-UTR-H-elongata_contig6208:9495..95561691679657.4927394-UTR-H-elongata_contig6208:9495..9556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6208 9496..9556 +
1622931001.4924266-UTR-H-elongata_contig6208:10086..108881622931001.4924266-UTR-H-elongata_contig6208:10086..10888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6208 10087..10888 +
1691679657.5305011-UTR-H-elongata_contig6208:10086..108881691679657.5305011-UTR-H-elongata_contig6208:10086..10888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6208 10087..10888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.4410799-CDS-H-elongata_contig6208:9556..96761622931001.4410799-CDS-H-elongata_contig6208:9556..9676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6208 9557..9676 +
1691679657.5100446-CDS-H-elongata_contig6208:9556..96761691679657.5100446-CDS-H-elongata_contig6208:9556..9676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6208 9557..9676 +
1622931001.466352-CDS-H-elongata_contig6208:9984..100861622931001.466352-CDS-H-elongata_contig6208:9984..10086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6208 9985..10086 +
1691679657.5201547-CDS-H-elongata_contig6208:9984..100861691679657.5201547-CDS-H-elongata_contig6208:9984..10086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6208 9985..10086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6208.13771.1

>prot_H-elongata_contig6208.13771.1 ID=prot_H-elongata_contig6208.13771.1|Name=mRNA_H-elongata_contig6208.13771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQ
PVWGLTQEERELVKAAREKVNSC*
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mRNA from alignment at H-elongata_contig6208:9496..10888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6208.13771.1 ID=mRNA_H-elongata_contig6208.13771.1|Name=mRNA_H-elongata_contig6208.13771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1393bp|location=Sequence derived from alignment at H-elongata_contig6208:9496..10888+ (Himanthalia elongata Himel1 dioecious)
GGCGCACCACAGGCCGGAGGCGGTCGCTGCCCTCGATGACATCCGCCGGC TGCGCGAGGCGATGCAGCATGTCTTTGAGATGGAGATCGAGCTTAGCCGC TTGGGGAACACCGTCTCAGGCAGGTCGATCGAGCTCAAAAGCGCTCTCAA GAAACGCCTCTCGGCGCCCACAATGCTTGAGGTGAGAGGAGATTCGATAA ATCGTGAAGAGTATGGCGGAGGTCCTTTGCAGGTCCTTCGCCTTTGCCGG CTAGGTTCCAATCGAAGCGAATCAAATCGAATAGAATCAAATCAAATCGG TGACCGCGCGCAAAGAGGACGATGACAGGAAGCGCTGATGGGCGCCGCTT TGTCCCGAGATCGTCCGAGTCAGCCGCGGACGTGCTTACCCCCGTTCGCC ACTTCCCCGATGAGCCTTATCCTTTGTCGTTCTCGTCCATGCCCTCTTAT CGCGGTCGCATGGGGTTTTGGCGTGGGCTTTCTGAGCAGTTGCTGACCCG GCTGGAAATCAACAGCCAGCCAGTGTGGGGGCTTACACAGGAGGAACGCG AGCTCGTTAAGGCTGCGCGCGAAAAGGTCAACAGCTGCTGAGTGGACGCG CTCGTAAACGTTAGGAGGCTTGAGCTCGCCTCGCGGGTACCCGAGAGGCA CGGTCGTGTGTCGTGTGTGTACGTGTGTGCATCCAAGAGAAAATTTGGGA CGCACAAACTGATAGGTTTGCTTTTCTTAAGAAGTGTTACCCGTCAGTGC AGCATAGCTGGATAGTAAGGCGACCAAGCCGGATGTGTGTAGCGGCGTCT CGGGATCTGTCGGTGGTTGAACCCAAATCTCTGGGAGGGCGCGTCGTTGT GGGGTGTTTGGTTGCATCACACCAACATGGGTCAAGGCGGCGATCTTTCT TCGCGCGACAAGATACAGAGCGACGCGGGACATCTTTTGGAAGCACACCA CTACGAAGAGGTGCCTTCCAGAGTTAGGGACAAGAAGGTGGATAGCTCTA CATCCAGCAGAGCTTGGAGTCATTTGTTTGTTTGTGTTTTCGTTGCATTA TGCAGTTTATATATTGAAAGGCACATTGTGAAAACGTCGGGAGAGGCTAT CGAAAGTCTTACCCTTTTACGATTGCTCCCCTGACGTCCTCGGCGATCCC CGGGCGATCCTTCAAACCTAGGGGGTTTCGACGGGGGGGAGGCGTTCTCA TCGCAAATCGATGTACACGACTTCCCTTTGATTGGTAGACCGCGTTTTCA GTAGCGTGCCCTATCCGAACGGGCCTTGGAAGTCATGAAGAAAGCTAGAT ATTATTTTAAAGCTAAATATTATGATTAAAGCTACATATTAAATTTCGAC TAGATATAGTCCGAAATTAATCGACATATATGTAAAATGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig6208:9496..10888+

>mRNA_H-elongata_contig6208.13771.1 ID=mRNA_H-elongata_contig6208.13771.1|Name=mRNA_H-elongata_contig6208.13771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig6208:9496..10888+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCATGTCTTTGAGATGGAGATCGAGCTTAGCCGCTTGGGGAACAC
CGTCTCAGGCAGGTCGATCGAGCTCAAAAGCGCTCTCAAGAAACGCCTCT
CGGCGCCCACAATGCTTGAGATGCAGCATGTCTTTGAGATGGAGATCGAG
CTTAGCCGCTTGGGGAACACCGTCTCAGGCAGGTCGATCGAGCTCAAAAG
CGCTCTCAAGAAACGCCTCTCGGCGCCCACAATGCTTGAGTTGCTGACCC
GGCTGGAAATCAACAGCCAGCCAGTGTGGGGGCTTACACAGGAGGAACGC
GAGCTCGTTAAGGCTGCGCGCGAAAAGGTCAACAGCTGCTGATTGCTGAC
CCGGCTGGAAATCAACAGCCAGCCAGTGTGGGGGCTTACACAGGAGGAAC
GCGAGCTCGTTAAGGCTGCGCGCGAAAAGGTCAACAGCTGCTGA
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