mRNA_H-elongata_contig62016.13765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62016.13765.1
Unique NamemRNA_H-elongata_contig62016.13765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: D7G787_ECTSI (Exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G787_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 8.120e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNK 153
            QVIDTV+LWSL+GQRKISLRFLAHYLL +NIQGETHDSIEDARIALALYNK
Sbjct:  978 QVIDTVHLWSLAGQRKISLRFLAHYLLKINIQGETHDSIEDARIALALYNK 1028
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.140e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNK 153
            QVIDTV+LWSL+GQRKISLRFLAHYLL +NIQGETHDSIEDARIALALYNK
Sbjct: 1541 QVIDTVHLWSLAGQRKISLRFLAHYLLKINIQGETHDSIEDARIALALYNK 1591
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: K8ZCB7_NANGC (PAB-dependent poly(A)-specific ribonuclease subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZCB7_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 9.470e-18
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 174
            QVIDTV+LW L GQRKISLRFLA YLLG +IQGETHDSIEDAR A+ LY K  +  +E
Sbjct:  268 QVIDTVDLWCLEGQRKISLRFLAAYLLGESIQGETHDSIEDARTAVRLYQKWEEAKKE 325
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A4D9D4P1_9STRA (Exonuclease domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4P1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.740e-17
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 174
            QVIDTV+LW L GQRKISLRFLA YLLG +IQGETHDSIEDAR A+ LY K  +  +E
Sbjct:  866 QVIDTVDLWCLEGQRKISLRFLAAYLLGESIQGETHDSIEDARTAVRLYQKWEEAKKE 923
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: UPI00146AB144 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like n=1 Tax=Trematomus bernacchii TaxID=40690 RepID=UPI00146AB144)

HSP 1 Score: 76.3 bits (186), Expect = 1.850e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTR 171
            QV+DTV+L+ L  +R ISLRFLA Y L +NIQGETHDSIEDAR ALALY K  +L+R
Sbjct:   95 QVVDTVHLFHLPRKRMISLRFLAWYFLELNIQGETHDSIEDARTALALYRKYLELSR 151
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A1B0DR70_PHLPP (Exonuclease domain-containing protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0DR70_PHLPP)

HSP 1 Score: 72.0 bits (175), Expect = 3.510e-15
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 174
            QVIDTV+L+ L  QR +SLRFLA + LG+ IQ ETHDSIEDAR AL LY +  KL +E
Sbjct:    7 QVIDTVHLFHLPHQRMVSLRFLAWHFLGIKIQSETHDSIEDARAALQLYKEYVKLQKE 64
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A250WW57_9CHLO (Exonuclease domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW57_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 4.770e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 174
            Q IDT  L+SL  QRK+SLRFLA YLLG+NIQG THD+IEDAR AL LY K  +L RE
Sbjct: 1331 QQIDTAELFSLRRQRKLSLRFLASYLLGINIQGGTHDAIEDARTALWLYQKYMQLQRE 1388
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A7S0S9V1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S9V1_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 8.630e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 174
            Q++DTV L+    QRK+SLRFLA YLLG++IQ ETHDSIEDAR A+ LY+K  +L RE
Sbjct:  347 QIVDTVELFHFKRQRKLSLRFLASYLLGLDIQQETHDSIEDARTAVRLYDKYLELVRE 404
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: UPI001469CF39 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469CF39)

HSP 1 Score: 76.3 bits (186), Expect = 8.850e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTR 171
            QV+DTV+L+ L  +R ISLRFLA Y L +NIQGETHDSIEDAR ALALY K  +L+R
Sbjct:  622 QVVDTVHLFHLPRKRMISLRFLAWYFLELNIQGETHDSIEDARTALALYRKYLELSR 678
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BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: UPI00097D7185 (PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D7185)

HSP 1 Score: 73.6 bits (179), Expect = 8.890e-15
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTR 171
            QV+DTV L+ L  +R ISLRFLA Y L +NIQGETHDSIEDAR AL LY K  +L+R
Sbjct:   86 QVVDTVYLFHLPRKRMISLRFLAWYFLDLNIQGETHDSIEDARTALQLYRKYLELSR 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G787_ECTSI8.120e-2292.16Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KX54_9PHAE8.140e-2292.16Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
K8ZCB7_NANGC9.470e-1872.41PAB-dependent poly(A)-specific ribonuclease subuni... [more]
A0A4D9D4P1_9STRA1.740e-1772.41Exonuclease domain-containing protein n=1 Tax=Nann... [more]
UPI00146AB1441.850e-1568.42PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A1B0DR70_PHLPP3.510e-1563.79Exonuclease domain-containing protein n=1 Tax=Phle... [more]
A0A250WW57_9CHLO4.770e-1568.97Exonuclease domain-containing protein n=1 Tax=Chla... [more]
A0A7S0S9V1_9CHLO8.630e-1563.79Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
UPI001469CF398.850e-1568.42PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
UPI00097D71858.890e-1566.67PAB-dependent poly(A)-specific ribonuclease subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62016contigH-elongata_contig62016:1070..1246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D7G787
KEGG koko:K12571
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0008150
EggNOG free text desc.poly(A)-specific ribonuclease activity
EggNOG OGsCOG0847@1,KOG1275@2759
EC3.1.13.4
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.8049147-CDS-H-elongata_contig62016:1069..12461622931000.8049147-CDS-H-elongata_contig62016:1069..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62016 1070..1246 +
1691679657.2817073-CDS-H-elongata_contig62016:1069..12461691679657.2817073-CDS-H-elongata_contig62016:1069..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62016 1070..1246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62016.13765.1prot_H-elongata_contig62016.13765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62016 1070..1246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62016.13765.1

>prot_H-elongata_contig62016.13765.1 ID=prot_H-elongata_contig62016.13765.1|Name=mRNA_H-elongata_contig62016.13765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYN
KVSKLTRER
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mRNA from alignment at H-elongata_contig62016:1070..1246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62016.13765.1 ID=mRNA_H-elongata_contig62016.13765.1|Name=mRNA_H-elongata_contig62016.13765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig62016:1070..1246+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATCGACACGGTCAACCTGTGGTCTTTGTCAGGACAGCGAAAGAT
CTCCCTCCGCTTCTTGGCGCACTACCTCCTCGGCATGAACATACAGGGGG
AAACGCACGACTCCATCGAGGACGCTCGCATCGCTCTCGCCCTCTACAAC
AAGGTTAGCAAGTTAACGAGAGAGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig62016:1070..1246+

>mRNA_H-elongata_contig62016.13765.1 ID=mRNA_H-elongata_contig62016.13765.1|Name=mRNA_H-elongata_contig62016.13765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig62016:1070..1246+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATCGACACGGTCAACCTGTGGTCTTTGTCAGGACAGCGAAAGAT
CTCCCTCCGCTTCTTGGCGCACTACCTCCTCGGCATGAACATACAGGGGG
AAACGCACGACTCCATCGAGGACGCTCGCATCGCTCTCGCCCTCTACAAC
AAGGTTAGCAAGTTAACGAGAGAGAGACAGGTGATCGACACGGTCAACCT
GTGGTCTTTGTCAGGACAGCGAAAGATCTCCCTCCGCTTCTTGGCGCACT
ACCTCCTCGGCATGAACATACAGGGGGAAACGCACGACTCCATCGAGGAC
GCTCGCATCGCTCTCGCCCTCTACAACAAGGTTAGCAAGTTAACGAGAGA
GAGA
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