mRNA_H-elongata_contig61923.13756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61923.13756.1
Unique NamemRNA_H-elongata_contig61923.13756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61923.13756.1 vs. uniprot
Match: A0A6H5KDN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN2_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.230e-40
Identity = 105/220 (47.73%), Postives = 139/220 (63.18%), Query Frame = 1 
Query:  166 MNAALNAVVSDISVKIKQQEEERTAQDTENTNLREELQALVGRYEAETKASSEALQIQEKEIDVFDARLKISTDAAKKALEVHEGLTKDVEEVTTQENILRRRVGEHASRLKKLESGLKTRLESIQLLQVEKARLSVSVARLSKEKKIALSRLGLDIADAAGXXXXXXXDDSV------------VGEDRLKVLVHEMAEKTAELEKEKEGLQARCRELQ 789
            MNA+LNAVVSDIS KIK+QEEER AQD EN +LR +LQAL+  Y+    AS ++L+  E+E      RL+    AA+ +L   EGL K +  +   E +LR+RVGEHA+RL++ E+GLKT LES+Q LQ  + +L VS+ARLSKEK   L+R G  +    G   XXXX                +GED ++ L+ E  +  AE E+EK+ LQARCRELQ
Sbjct:    1 MNASLNAVVSDISKKIKEQEEERIAQDAENASLRSDLQALLQTYDENKAASEKSLRGHEEEGVKLAKRLESLAAAAQISLGREEGLRKAIGGLAEAEGVLRKRVGEHATRLERQEAGLKTYLESVQRLQANETKLLVSIARLSKEKTSLLARAGCLVVGGEGGVDXXXXXXXXXXXXXXXXXXEKLGEDGMRALLREKKQAAAEAEREKDRLQARCRELQ 220
[Close]
BLAST of mRNA_H-elongata_contig61923.13756.1 vs. uniprot
Match: D7G8F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.060e-27
Identity = 106/275 (38.55%), Postives = 140/275 (50.91%), Query Frame = 1 
Query:    1 KVMRAASEDCARETLRLEQAAVKLHALSVELDGRHRAVLKGRKEAAAEELEKREEMNAALNAVVSDISVKIKQQEEERTAQDTENTNLREELQALVGRYEAETKASSEALQIQEKEIDVFDARLKISTDAAKKALEVHEGLTKDVEEVTTQENILRRRVGEHASRLKKLESGLKTRLESIQLLQVEKARLSVSVARLSKEKKIALSRLGLDIADAAGXXXXXXX------------DDSVVGEDRLKVLVHEMAEKTAELEKEKEGLQARCRELQ 789
            +VMRA ++  ARE  RL QAA KL  LS ELDGR  A+L+ R   A +E  +REEMNA+LNAVVSDIS KIK+QEEER AQD EN +LR +LQAL+  Y+    AS ++L+  E+E      RL+  T A + +L   EGL K + E                   ++ E+                                 L+R G  +    G   XXXX            DD+ +GED ++ L+ E  +  AE E+EK+ LQARCRELQ
Sbjct:  242 EVMRAEADADAREAARLNQAAAKLQTLSGELDGRRTAMLEARNVEAGKETARREEMNASLNAVVSDISKKIKEQEEERIAQDAENASLRSDLQALLQTYDENKTASEKSLRGHEEEGVKLAKRLESLTAAVQISLGREEGLRKAIGEXXXXXXXXXXXXXXXXXXXERQEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLARAGCLVVGGEGGIDXXXXXXXXXXXRSDRRDDAKLGEDGMRALLREKKQAAAEAEREKDRLQARCRELQ 516
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61923.13756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDN2_9PHAE1.230e-4047.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8F5_ECTSI2.060e-2738.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61923contigH-elongata_contig61923:267..2472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTaxilin family
Ec32 orthologEc-14_002860.1
Exons5
Model size789
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61923.13756.1prot_H-elongata_contig61923.13756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61923 273..2472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.632438-UTR-H-elongata_contig61923:266..2721622930999.632438-UTR-H-elongata_contig61923:266..272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61923 267..272 +
1691679656.806712-UTR-H-elongata_contig61923:266..2721691679656.806712-UTR-H-elongata_contig61923:266..272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61923 267..272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.6543782-CDS-H-elongata_contig61923:272..4241622930999.6543782-CDS-H-elongata_contig61923:272..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 273..424 +
1691679656.8157892-CDS-H-elongata_contig61923:272..4241691679656.8157892-CDS-H-elongata_contig61923:272..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 273..424 +
1622930999.6747959-CDS-H-elongata_contig61923:855..9761622930999.6747959-CDS-H-elongata_contig61923:855..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 856..976 +
1691679656.8260512-CDS-H-elongata_contig61923:855..9761691679656.8260512-CDS-H-elongata_contig61923:855..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 856..976 +
1622930999.688573-CDS-H-elongata_contig61923:1093..11621622930999.688573-CDS-H-elongata_contig61923:1093..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 1094..1162 +
1691679656.836368-CDS-H-elongata_contig61923:1093..11621691679656.836368-CDS-H-elongata_contig61923:1093..1162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 1094..1162 +
1622930999.7074833-CDS-H-elongata_contig61923:1661..17691622930999.7074833-CDS-H-elongata_contig61923:1661..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 1662..1769 +
1691679656.8467703-CDS-H-elongata_contig61923:1661..17691691679656.8467703-CDS-H-elongata_contig61923:1661..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 1662..1769 +
1622930999.7213776-CDS-H-elongata_contig61923:2139..24721622930999.7213776-CDS-H-elongata_contig61923:2139..2472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 2140..2472 +
1691679656.8566766-CDS-H-elongata_contig61923:2139..24721691679656.8566766-CDS-H-elongata_contig61923:2139..2472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61923 2140..2472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61923.13756.1

>prot_H-elongata_contig61923.13756.1 ID=prot_H-elongata_contig61923.13756.1|Name=mRNA_H-elongata_contig61923.13756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MRAASEDCARETLRLEQAAVKLHALSVELDGRHRAVLKGRKEAAAEELEK
REEMNAALNAVVSDISVKIKQQEEERTAQDTENTNLREELQALVGRYEAE
TKASSEALQIQEKEIDVFDARLKISTDAAKKALEVHEGLTKDVEEVTTQE
NILRRRVGEHASRLKKLESGLKTRLESIQLLQVEKARLSVSVARLSKEKK
IALSRLGLDIADAAGGGGEEGGDDSVVGEDRLKVLVHEMAEKTAELEKEK
EGLQARCRELQ
back to top

mRNA from alignment at H-elongata_contig61923:267..2472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61923.13756.1 ID=mRNA_H-elongata_contig61923.13756.1|Name=mRNA_H-elongata_contig61923.13756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2206bp|location=Sequence derived from alignment at H-elongata_contig61923:267..2472+ (Himanthalia elongata Himel1 dioecious)
AAGGTCATGCGCGCGGCGTCGGAAGATTGCGCTCGTGAGACCTTGCGCCT
GGAACAGGCCGCGGTAAAGCTACATGCCCTAAGCGTCGAGCTCGACGGAA
GACACAGGGCGGTTCTAAAGGGTAGAAAAGAGGCCGCGGCAGAAGAGTTG
GAGAAGAGGTCCGTGGTGTCGAGGGAGGGATGCTGTAGATCCCCGCTCGT
TCGTTGCTACCGATACGCCTTATTCTTTGCAGGGGCGTTAGGAAAGGACC
CAATAGAAGCAGCGTTCCTGGAATCGAGTAACGCGGTCGAAGCTTGGTTC
GAGTCCAAGGATATTTTGGTTTTGTGTCACGTGGTTGCACTCGACGGTAA
GCGTTGTGGCAGACGTGTCGAGAACCCGCCGCCAGATGCGCTGATTCAGC
AGCAAGCGGCAAGATGAGGCGGACGCGAGAAAAATCGTTTTAGCGATAGC
CTGAAAACGTTTGTGGTAATCAACGTCCACAGAGTAATGATCGCGGTTTC
CGCTTCTTCGAAAGGGGATTTTGCAGCAGTGCAATTCCGAGACCCGTTTT
AATTCGGGTTTTTACGCTGTTTGGTGGATGTTTTATCAGGGAAGAAATGA
ACGCGGCTCTGAATGCCGTGGTGAGCGACATCTCTGTGAAAATCAAGCAG
CAAGAGGAAGAGAGAACCGCTCAGGACACAGAAAACACCAATCTCCGAGA
GGAGCTCCAGGTATACTGGTCTTTTCTCTGGCTCATCGGTTGCTCAGACT
GCGCGCTTCTAGTGAAGGCCTATCCCCTAATCTTCAGACCCCAACCCCCG
TTCGATGTGTCCTTTTTCCGTCGGTAGGCGCTTGTTGGACGTTACGAGGC
AGAGACGAAAGCCTCTTCGGAGGCCCTTCAGATACAAGAAAAAGAGGTAC
GGGTGATGGCAATGGGCTGAGGTGTAGGTATATTGTGGTTGTCCTTTGCC
GATTACTATGGTTGGACATGCGATCTGCGCTCGTGGCTCTTAAGTGTGAC
AAGTTACGCGCGACGCGCAGCTCGCGCGGGGAGGGGAACACGCGGTTGGG
AGTGGTTTCATGATCCACGAAAGATCCGTATACCTCGCGGAGTTTCCCTA
CGCAGTACCTCGCAGTGTTGTGAACGGTGCCACATCAAGTACGCGCTCAC
ACGAGTGCAAACGAATTATGTGCACCGGATGAAGAAAAAATGACAACGGC
TGCCGCCACCACCGCCGCATCTGCTGGCACTCGTTTAAATATATATATAT
ATATATATTTCTGGACGCTGCAAGCATACCCTGTCGCTCCTTCCTGATCC
AGCTACGAGTAGTCGCCCTCCGACTGTTTTTTACGCCCTACTTTCTGCGC
TCGCCTATCGGGCTTCGCTATTTGTGCTGCAAATAAACCCCGCAGATAGA
TGTGTTCGATGCTCGGCTCAAAATATCGACGGACGCGGCTAAGAAAGCTT
TAGAGGTTCATGAAGGGCTGACGAAAGATGTGGAAGAAGTGACCACCCAG
GAGGTGATTTCGTGGGTTTGACGGCATGGCTGGTCGGAGGCGCGTCGAGT
TGACGTGCTGCGTGCATTCCCTATTCTGGTAACATGTCCCACGATGCCTC
GCTCTCGACAACGAACAGGAAAATCACGTTCGCATCTTTTCCCGACATGA
CGCCTCGCAAAAATGACCCAGGCAATTTTGCAAGGGCTCGTCCGCCAACC
GTATGCACCAACGTTTGCGATGTGCCGAAATCGTCGGTTTCCTTTCGAAT
GGCCTCTCCACTCTCTATTTGCCTCTTGTCTCTCCGAGGGATGAGGTTTT
GGGACTCGTTTGTCTCCAACCACCCGTGCGTCGTTACCCCCACACCATCC
CGCGTGTTTTTCGGGAAGTGCAGAATATTCTCCGGCGAAGGGTTGGCGAG
CACGCGTCAAGGCTGAAGAAGCTAGAATCCGGGCTGAAGACGCGTCTTGA
GTCGATCCAACTGCTGCAGGTTGAAAAGGCCAGACTAAGCGTGTCTGTTG
CGCGGCTCTCTAAGGAAAAGAAGATTGCGCTCTCGCGTCTCGGGCTAGAT
ATCGCTGACGCGGCTGGTGGTGGCGGGGAGGAGGGGGGTGACGACAGCGT
TGTTGGAGAAGATCGACTGAAGGTGCTCGTGCATGAGATGGCGGAAAAGA
CGGCCGAGCTGGAGAAGGAAAAAGAGGGGCTGCAAGCTCGTTGCAGGGAA
TTACAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61923:267..2472+

>mRNA_H-elongata_contig61923.13756.1 ID=mRNA_H-elongata_contig61923.13756.1|Name=mRNA_H-elongata_contig61923.13756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig61923:267..2472+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGCGGCGTCGGAAGATTGCGCTCGTGAGACCTTGCGCCTGGAACA
GGCCGCGGTAAAGCTACATGCCCTAAGCGTCGAGCTCGACGGAAGACACA
GGGCGGTTCTAAAGGGTAGAAAAGAGGCCGCGGCAGAAGAGTTGGAGAAG
AGATGCGCGCGGCGTCGGAAGATTGCGCTCGTGAGACCTTGCGCCTGGAA
CAGGCCGCGGTAAAGCTACATGCCCTAAGCGTCGAGCTCGACGGAAGACA
CAGGGCGGTTCTAAAGGGTAGAAAAGAGGCCGCGGCAGAAGAGTTGGAGA
AGAGGGAAGAAATGAACGCGGCTCTGAATGCCGTGGTGAGCGACATCTCT
GTGAAAATCAAGCAGCAAGAGGAAGAGAGAACCGCTCAGGACACAGAAAA
CACCAATCTCCGAGAGGAGCTCCAGGGAAGAAATGAACGCGGCTCTGAAT
GCCGTGGTGAGCGACATCTCTGTGAAAATCAAGCAGCAAGAGGAAGAGAG
AACCGCTCAGGACACAGAAAACACCAATCTCCGAGAGGAGCTCCAGGCGC
TTGTTGGACGTTACGAGGCAGAGACGAAAGCCTCTTCGGAGGCCCTTCAG
ATACAAGAAAAAGAGGCGCTTGTTGGACGTTACGAGGCAGAGACGAAAGC
CTCTTCGGAGGCCCTTCAGATACAAGAAAAAGAGATAGATGTGTTCGATG
CTCGGCTCAAAATATCGACGGACGCGGCTAAGAAAGCTTTAGAGGTTCAT
GAAGGGCTGACGAAAGATGTGGAAGAAGTGACCACCCAGGAGATAGATGT
GTTCGATGCTCGGCTCAAAATATCGACGGACGCGGCTAAGAAAGCTTTAG
AGGTTCATGAAGGGCTGACGAAAGATGTGGAAGAAGTGACCACCCAGGAG
AATATTCTCCGGCGAAGGGTTGGCGAGCACGCGTCAAGGCTGAAGAAGCT
AGAATCCGGGCTGAAGACGCGTCTTGAGTCGATCCAACTGCTGCAGGTTG
AAAAGGCCAGACTAAGCGTGTCTGTTGCGCGGCTCTCTAAGGAAAAGAAG
ATTGCGCTCTCGCGTCTCGGGCTAGATATCGCTGACGCGGCTGGTGGTGG
CGGGGAGGAGGGGGGTGACGACAGCGTTGTTGGAGAAGATCGACTGAAGG
TGCTCGTGCATGAGATGGCGGAAAAGACGGCCGAGCTGGAGAAGGAAAAA
GAGGGGCTGCAAGCTCGTTGCAGGGAATTACAGAATATTCTCCGGCGAAG
GGTTGGCGAGCACGCGTCAAGGCTGAAGAAGCTAGAATCCGGGCTGAAGA
CGCGTCTTGAGTCGATCCAACTGCTGCAGGTTGAAAAGGCCAGACTAAGC
GTGTCTGTTGCGCGGCTCTCTAAGGAAAAGAAGATTGCGCTCTCGCGTCT
CGGGCTAGATATCGCTGACGCGGCTGGTGGTGGCGGGGAGGAGGGGGGTG
ACGACAGCGTTGTTGGAGAAGATCGACTGAAGGTGCTCGTGCATGAGATG
GCGGAAAAGACGGCCGAGCTGGAGAAGGAAAAAGAGGGGCTGCAAGCTCG
TTGCAGGGAATTACAG
back to top