mRNA_H-elongata_contig61906.13754.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61906.13754.1
Unique NamemRNA_H-elongata_contig61906.13754.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.130e-33
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLVK 198
            GPSGKTFNFTFH+RGTDEQ+DELGRLM N CKLVPGGVVCF+ASYGYLDQV+QRWKASGT RQL K
Sbjct:  829 GPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLSK 894          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.140e-21
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLVK 198
            GPSG  FNFTF +RG+ EQ+DEL RL+ N C LVPGGVVCF+ S+GY++QV+Q WKASG   QL K
Sbjct:  770 GPSGGVFNFTFAKRGSPEQMDELCRLLSNVCALVPGGVVCFLPSFGYMEQVLQCWKASGALHQLSK 835          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A7S0SVU7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SVU7_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 8.250e-18
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLVK 198
            GPSG+TF+F+F  R   E +DELGRL+VNAC +VPGGVV F  S+ Y D V  RW  +G   QL K
Sbjct:    3 GPSGRTFDFSFSARAAPEMIDELGRLLVNACAVVPGGVVVFFPSFKYADDVYARWVKTGAMGQLSK 68          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A2P6TCU8_CHLSO (Putative ATP-dependent RNA helicase DDX11 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCU8_CHLSO)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLV 195
            GPSG   +F    RG+   +DELGRL++NAC++VPGGVV F  S+ Y DQV  RW+ASG  RQL 
Sbjct:  748 GPSGAALDFRHAARGSAATMDELGRLVLNACQVVPGGVVVFFPSFSYADQVYARWQASGLLRQLA 812          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A401QC09_SCYTO (HELICc2 domain-containing protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QC09_SCYTO)

HSP 1 Score: 72.8 bits (177), Expect = 2.820e-15
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQL 192
            GPSG+   FT+ +R   + +DE GR++VN C +VPGG+VCF  SY Y  QV  RW+ +G   QL
Sbjct:   23 GPSGQQLEFTYQKRDKPQLLDECGRVLVNLCNVVPGGIVCFFPSYDYEKQVYTRWEKTGLLAQL 86          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A433QTR2_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QTR2_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.710e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASG 177
            GPS     FTF +R   + +DELG+++VN C L+P GVVCF ASY YL+QV +RW+ SG
Sbjct:  643 GPSSMPLEFTFEKRSDAKLIDELGQIVVNLCNLIPDGVVCFFASYAYLEQVTRRWEGSG 701          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A433DGD7_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DGD7_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.710e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASG 177
            GPS     FTF +R   + +DELG+++VN C L+P GVVCF ASY YL+QV +RW+ SG
Sbjct:  699 GPSSMPLEFTFEKRSDAKLIDELGQIVVNLCNLIPDGVVCFFASYAYLEQVTRRWEGSG 757          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A7S2AUN2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AUN2_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 4.040e-14
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQL 192
            GPSG   N    +R TD+Q DELGR++ NA ++VPGGVVCFV S+ ++ +++ RW+++G F QL
Sbjct:  110 GPSGLPLNLEASKRATDDQRDELGRVLRNAVRIVPGGVVCFVPSHRFVGELMSRWRSTGLFAQL 173          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A7S2RUD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUD0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.280e-14
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQL 192
            GP+   F+F F  R T EQ+DELGRL+VN C + P GVVCF+ SY Y  + +  W   GT R+L
Sbjct:  284 GPTNVRFDFRFQSRATPEQLDELGRLLVNVCTVTPAGVVCFLPSYDYERKAVDHWTLQGTLRRL 347          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: E1ZP80_CHLVA (Helicase ATP-binding domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZP80_CHLVA)

HSP 1 Score: 73.9 bits (180), Expect = 8.140e-14
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLV 195
            GPSG   +F    RG    +DELGRL++NAC++VPGGVV F  S+ Y DQV  RW+ SG  RQL 
Sbjct:  719 GPSGAPLDFRNASRGAAATLDELGRLVLNACQVVPGGVVLFFPSFSYADQVHARWQHSGLLRQLA 783          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI5.130e-3387.88Helicase ATP-binding domain-containing protein n=1... [more]
A0A835YWY4_9STRA2.140e-2165.15Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S0SVU7_9CHLO8.250e-1856.06Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A2P6TCU8_CHLSO2.640e-1555.38Putative ATP-dependent RNA helicase DDX11 n=1 Tax=... [more]
A0A401QC09_SCYTO2.820e-1548.44HELICc2 domain-containing protein n=1 Tax=Scyliorh... [more]
A0A433QTR2_9FUNG1.710e-1454.24ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdema... [more]
A0A433DGD7_9FUNG1.710e-1454.24ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdema... [more]
A0A7S2AUN2_9CHLO4.040e-1450.00Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A7S2RUD0_9STRA4.280e-1450.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
E1ZP80_CHLVA8.140e-1453.85Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61906contigH-elongata_contig61906:650..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.1e-28
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
KEGG koko:K11273
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
Ec32 ortholog descriptionDNA helicase (DNA repair), Rad3 type
Ec32 orthologEc-15_001630.1
EC3.6.4.13
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.4779174-CDS-H-elongata_contig61906:649..7991622930999.4779174-CDS-H-elongata_contig61906:649..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61906 650..799 +
1691679656.7268667-CDS-H-elongata_contig61906:649..7991691679656.7268667-CDS-H-elongata_contig61906:649..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61906 650..799 +
1622930999.4983857-CDS-H-elongata_contig61906:1201..12521622930999.4983857-CDS-H-elongata_contig61906:1201..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61906 1202..1252 +
1691679656.7478645-CDS-H-elongata_contig61906:1201..12521691679656.7478645-CDS-H-elongata_contig61906:1201..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61906 1202..1252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61906.13754.1prot_H-elongata_contig61906.13754.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61906 650..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61906.13754.1

>prot_H-elongata_contig61906.13754.1 ID=prot_H-elongata_contig61906.13754.1|Name=mRNA_H-elongata_contig61906.13754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQ
VIQRWKASGTFRQLVK*
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mRNA from alignment at H-elongata_contig61906:650..1252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61906.13754.1 ID=mRNA_H-elongata_contig61906.13754.1|Name=mRNA_H-elongata_contig61906.13754.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig61906:650..1252+ (Himanthalia elongata Himel1 dioecious)
GGGCCCTCGGGCAAGACGTTCAACTTCACCTTTCATCAAAGGGGAACGGA CGAACAGGTCGACGAGCTGGGGCGACTCATGGTTAACGCATGCAAGCTCG TGCCCGGCGGAGTGGTCTGTTTCGTGGCATCCTACGGCTACCTGGATCAG GTGACACGAATCGTTTCTTGTCTCTTTCGTTCTCTGGTTTATCGTACCTC ACAGCGCTGGACGTTTTTCAAACCCTCCGAACATCCACACTATATCCTAT ATACTGAAGTCCAAGGGACCAACGATCGTCAGGTTCGAATGAGTACACTT TTGAGCACAAAATCGTCACATATGTGATTAATTGTGTTCCCCAATGGTAC AAACTCGTCCGGTCAACGGTGTAATGTTGAAAGAAGTCCGCCATTATCCT GTACACTTAGATAATTCATTATGTGGGAACGCCAAACCAGAGTTTAAGAG TGTCTTGCCATAAGTGTTTGATGCTGTAAGCGTCTCGAGTGATCTCTCTC TCTCTTTCTCGACCTCTGTCATCGACGTTGACATTTCTCTGTTTCATCGT AGGTGATACAAAGGTGGAAGGCATCTGGCACCTTCCGGCAACTCGTCAAG TGA
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Coding sequence (CDS) from alignment at H-elongata_contig61906:650..1252+

>mRNA_H-elongata_contig61906.13754.1 ID=mRNA_H-elongata_contig61906.13754.1|Name=mRNA_H-elongata_contig61906.13754.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig61906:650..1252+ (Himanthalia elongata Himel1 dioecious)
GGGCCCTCGGGCAAGACGTTCAACTTCACCTTTCATCAAAGGGGAACGGA
CGAACAGGTCGACGAGCTGGGGCGACTCATGGTTAACGCATGCAAGCTCG
TGCCCGGCGGAGTGGTCTGTTTCGTGGCATCCTACGGCTACCTGGATCAG
GGGCCCTCGGGCAAGACGTTCAACTTCACCTTTCATCAAAGGGGAACGGA
CGAACAGGTCGACGAGCTGGGGCGACTCATGGTTAACGCATGCAAGCTCG
TGCCCGGCGGAGTGGTCTGTTTCGTGGCATCCTACGGCTACCTGGATCAG
GTGATACAAAGGTGGAAGGCATCTGGCACCTTCCGGCAACTCGTCAAGTG
AGTGATACAAAGGTGGAAGGCATCTGGCACCTTCCGGCAACTCGTCAAGT
GA
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