mRNA_H-elongata_contig61892.13751.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61892.13751.1
Unique NamemRNA_H-elongata_contig61892.13751.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: D8LBI4_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.690e-26
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L++DLE+ DR +TPW+V MMHCPWYNSNLAHQGERQAETAMRAMEPLL++HK AVVI GHVH
Sbjct:  410 LQKDLESADRALTPWLVVMMHCPWYNSNLAHQGERQAETAMRAMEPLLHQHKAAVVITGHVH 471          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: A0A6H5KE14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE14_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.520e-21
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L +DL+  DR  TPW+VAM HCPW+NSNLAH GER A TAMRAMEP+L+++K ++V+AGHVH
Sbjct:  162 LVEDLDGCDRSRTPWLVAMFHCPWHNSNLAHPGERMAATAMRAMEPVLFQNKASLVVAGHVH 223          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: D7FWJ2_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ2_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.870e-20
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L +DL+  DR  TPW+VAM HCPW+NSNLAH GER A TAM AMEP+L++HK ++ IAGHVH
Sbjct:  409 LVEDLDGCDRSRTPWLVAMFHCPWHNSNLAHPGERMAATAMHAMEPVLFQHKASLAIAGHVH 470          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: A0A7J6VM02_THATH (Purple acid phosphatase (Fragment) n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VM02_THATH)

HSP 1 Score: 83.6 bits (205), Expect = 5.740e-18
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L+ DL  +DR+ TPWIV ++H PWYNSN AHQGE ++E   +AME LLY  +V VV AGHVH
Sbjct:    3 LQADLAKIDRNRTPWIVVLIHVPWYNSNTAHQGEDESEGMKKAMEDLLYGARVDVVFAGHVH 64          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: UPI0020242D99 (probable purple acid phosphatase 20 n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI0020242D99)

HSP 1 Score: 88.6 bits (218), Expect = 3.510e-17
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVHGESIISPSHKDT 222
            L+ DL  +DR  TPWIVA++H PWYNSN AHQGE +A+   ++ME LLY+ +V VV AGHVH     +  H DT
Sbjct:  275 LQADLGKIDRGKTPWIVAVVHAPWYNSNSAHQGESEADDMKKSMETLLYQARVDVVFAGHVHAYERFTRVHNDT 348          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: UPI000D62BDD8 (probable purple acid phosphatase 20 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62BDD8)

HSP 1 Score: 86.7 bits (213), Expect = 1.690e-16
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L  DLE VDR  TPW+V ++H PWYNSN AHQGE+++   M +ME LLYK +V VV AGHVH
Sbjct:  273 LESDLEKVDRSKTPWLVVLIHAPWYNSNYAHQGEQESVGMMESMEGLLYKARVDVVFAGHVH 334          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: A0A5K0Y3C1_9MAGN (Metallophos domain-containing protein (Fragment) n=6 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y3C1_9MAGN)

HSP 1 Score: 79.0 bits (193), Expect = 3.040e-16
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 DLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            DL  VDR  TPW++ +MH PWYNSN AHQGE   +  M +MEPLLY   V +V+AGHVH
Sbjct:    2 DLSKVDRQKTPWLLVLMHAPWYNSNWAHQGE--GDKMMSSMEPLLYAANVDIVLAGHVH 58          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: C6F9P8_9SPER (Purple acid phosphatase (Fragment) n=4 Tax=Pseudotsuga TaxID=3356 RepID=C6F9P8_9SPER)

HSP 1 Score: 79.0 bits (193), Expect = 4.740e-16
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   10 DLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVHGESIISPSHKDTRVFLNKECKR 252
            DL  VDR  TPW++ ++H PWYN+N AH GE + E   +AMEPLLY   V +V AGHVH         +  RV+ NK   R
Sbjct:    2 DLARVDRVRTPWLIVLLHAPWYNTNTAHLGEGEGEKMRQAMEPLLYAANVDIVFAGHVHAYE------RFARVYNNKRDPR 76          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: UPI0012635A19 (probable purple acid phosphatase 20 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012635A19)

HSP 1 Score: 85.1 bits (209), Expect = 5.650e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L QDL+ +DR +TPWIV ++H PWYNSN AHQGE ++    +AME LLY+ +V +V AGHVH
Sbjct:  261 LEQDLKNIDRKITPWIVVVIHAPWYNSNTAHQGENESVEMKKAMEELLYEARVDIVFAGHVH 322          
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Match: A0A251VS10_HELAN (Purple acid phosphatase n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VS10_HELAN)

HSP 1 Score: 85.1 bits (209), Expect = 5.850e-16
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 LRQDLEAVDRDMTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHVH 186
            L  DL+ VDR+ TPW+V ++H PWYNSN AHQGE Q+   M AME LLYK +V VV+AGHVH
Sbjct:  268 LVSDLKKVDRNKTPWLVVLIHAPWYNSNYAHQGEIQSVGMMDAMEGLLYKARVDVVLAGHVH 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61892.13751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI4_ECTSI2.690e-2680.65Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KE14_9PHAE3.520e-2166.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWJ2_ECTSI2.870e-2066.13Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A7J6VM02_THATH5.740e-1859.68Purple acid phosphatase (Fragment) n=1 Tax=Thalict... [more]
UPI0020242D993.510e-1754.05probable purple acid phosphatase 20 n=1 Tax=Ziziph... [more]
UPI000D62BDD81.690e-1661.29probable purple acid phosphatase 20 n=1 Tax=Cynara... [more]
A0A5K0Y3C1_9MAGN3.040e-1659.32Metallophos domain-containing protein (Fragment) n... [more]
C6F9P8_9SPER4.740e-1646.91Purple acid phosphatase (Fragment) n=4 Tax=Pseudot... [more]
UPI0012635A195.650e-1658.06probable purple acid phosphatase 20 n=1 Tax=Pistac... [more]
A0A251VS10_HELAN5.850e-1662.90Purple acid phosphatase n=3 Tax=Helianthus annuus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61892contigH-elongata_contig61892:224..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D8LBI4
KEGG koko:K22390
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61892.13751.1prot_H-elongata_contig61892.13751.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61892 257..637 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.6626897-UTR-H-elongata_contig61892:223..2561622930998.6626897-UTR-H-elongata_contig61892:223..256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61892 224..256 +
1691679656.275102-UTR-H-elongata_contig61892:223..2561691679656.275102-UTR-H-elongata_contig61892:223..256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61892 224..256 +
1622930998.7010365-UTR-H-elongata_contig61892:637..8051622930998.7010365-UTR-H-elongata_contig61892:637..805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61892 638..805 +
1691679656.2986417-UTR-H-elongata_contig61892:637..8051691679656.2986417-UTR-H-elongata_contig61892:637..805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61892 638..805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.6846614-CDS-H-elongata_contig61892:256..6371622930998.6846614-CDS-H-elongata_contig61892:256..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61892 257..637 +
1691679656.2887316-CDS-H-elongata_contig61892:256..6371691679656.2887316-CDS-H-elongata_contig61892:256..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61892 257..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61892.13751.1

>prot_H-elongata_contig61892.13751.1 ID=prot_H-elongata_contig61892.13751.1|Name=mRNA_H-elongata_contig61892.13751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MTPWIVAMMHCPWYNSNLAHQGERQAETAMRAMEPLLYKHKVAVVIAGHV
HGESIISPSHKDTRVFLNKECKRDHTVSLALLRDFCFDLPLPYMWITGFY
PEATASRSSFPSLNALPRSAFSKYFG*
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mRNA from alignment at H-elongata_contig61892:224..805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61892.13751.1 ID=mRNA_H-elongata_contig61892.13751.1|Name=mRNA_H-elongata_contig61892.13751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig61892:224..805+ (Himanthalia elongata Himel1 dioecious)
CTGCGGCAGGATCTCGAGGCGGTGGACCGTGACATGACACCCTGGATTGT CGCCATGATGCACTGCCCCTGGTATAATTCTAACCTAGCCCATCAGGGAG AGAGGCAGGCGGAGACGGCCATGCGCGCCATGGAGCCGCTGCTGTACAAG CACAAGGTGGCCGTCGTGATCGCCGGGCATGTGCATGGCGAGTCGATCAT CAGCCCTTCTCACAAGGACACTCGAGTTTTCTTGAACAAAGAGTGTAAGC GGGACCACACGGTCTCGTTGGCATTACTCCGCGATTTTTGTTTTGACCTG CCGTTGCCTTATATGTGGATTACCGGGTTTTACCCTGAAGCGACGGCGTC ACGCTCTAGCTTTCCTTCTTTGAATGCTCTTCCCCGCTCCGCCTTCTCGA AATATTTCGGCTAACAAAATGTCAAGATAAAGCCGCGGTTATTTTGCTAT TGAAGGACGTTCAGGTTCAGGTGTACATGCTTCTTCTTTCTGCACTAGTT GTGTGCGCGCGTAAATATATCCCCCCCCTCCCCTGACTTTTGTTGTGATG TGGAGCTGTAAGCTGCTATTAATATTACATGG
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Coding sequence (CDS) from alignment at H-elongata_contig61892:224..805+

>mRNA_H-elongata_contig61892.13751.1 ID=mRNA_H-elongata_contig61892.13751.1|Name=mRNA_H-elongata_contig61892.13751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig61892:224..805+ (Himanthalia elongata Himel1 dioecious)
ATGACACCCTGGATTGTCGCCATGATGCACTGCCCCTGGTATAATTCTAA
CCTAGCCCATCAGGGAGAGAGGCAGGCGGAGACGGCCATGCGCGCCATGG
AGCCGCTGCTGTACAAGCACAAGGTGGCCGTCGTGATCGCCGGGCATGTG
CATGGCGAGTCGATCATCAGCCCTTCTCACAAGGACACTCGAGTTTTCTT
GAACAAAGAGTGTAAGCGGGACCACACGGTCTCGTTGGCATTACTCCGCG
ATTTTTGTTTTGACCTGCCGTTGCCTTATATGTGGATTACCGGGTTTTAC
CCTGAAGCGACGGCGTCACGCTCTAGCTTTCCTTCTTTGAATGCTCTTCC
CCGCTCCGCCTTCTCGAAATATTTCGGCTAAATGACACCCTGGATTGTCG
CCATGATGCACTGCCCCTGGTATAATTCTAACCTAGCCCATCAGGGAGAG
AGGCAGGCGGAGACGGCCATGCGCGCCATGGAGCCGCTGCTGTACAAGCA
CAAGGTGGCCGTCGTGATCGCCGGGCATGTGCATGGCGAGTCGATCATCA
GCCCTTCTCACAAGGACACTCGAGTTTTCTTGAACAAAGAGTGTAAGCGG
GACCACACGGTCTCGTTGGCATTACTCCGCGATTTTTGTTTTGACCTGCC
GTTGCCTTATATGTGGATTACCGGGTTTTACCCTGAAGCGACGGCGTCAC
GCTCTAGCTTTCCTTCTTTGAATGCTCTTCCCCGCTCCGCCTTCTCGAAA
TATTTCGGCTAA
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