mRNA_H-elongata_contig61880.13749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61880.13749.1
Unique NamemRNA_H-elongata_contig61880.13749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: D8LR58_ECTSI (Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR58_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 1.210e-157
Identity = 223/254 (87.80%), Postives = 240/254 (94.49%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIAVINLPRSGG 762
            L+ENTAEMFGIELA E+EY+FSS KAA+FTWYGCT+ETTGWVSS+YVAQETPMK+YVNTHAQLEA+RDKALQALQ G T++TGPRVMVVGE DSGKSTLANILAAYAVRLGRCPTFVDLDVGQGM+T+PG IAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPEL+K LV RMAECLKRRVANDIDASASGA+FNTCGWVEGLGL+LL HAI   +IDVVLVMKHDRLYADM A LPRS+AVINLPRSGG
Sbjct:   35 LRENTAEMFGIELAAEYEYKFSSTKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNITGPRVMVVGEADSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMITVPGGIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELFKKLVGRMAECLKRRVANDIDASASGAIFNTCGWVEGLGLELLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGG 288
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BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 452 bits (1164), Expect = 1.860e-147
Identity = 222/254 (87.40%), Postives = 239/254 (94.09%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIAVINLPRSGG 762
            LKENTAEMFGIELA E+EY+FSS KAA+FTWYGCT+ETTGWVSS+YVAQETPMK+YVNTHAQLEA+RDKALQALQ G T++TGPRVMVVGE DSGKSTLANILAAYAVRLGRCPTFVDLDVGQGM+ +PG IAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPEL+K LV RMAECLKRR+ANDIDASASGA+FNTCGWVEGLGL+LL HAI   +IDVVLVMKHDRLYADM A LPRS+AVINLPRSGG
Sbjct:   35 LKENTAEMFGIELAAEYEYKFSSTKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNTHAQLEARRDKALQALQAGRTNITGPRVMVVGEADSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMIAVPGGIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELFKKLVGRMAECLKRRMANDIDASASGAIFNTCGWVEGLGLELLAHAITVLDIDVVLVMKHDRLYADMVATLPRSVAVINLPRSGG 288
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BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: A0A835YJV7_9STRA (Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV7_9STRA)

HSP 1 Score: 303 bits (775), Expect = 5.570e-98
Identity = 155/261 (59.39%), Postives = 196/261 (75.10%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSS-AKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNAN---LPRSI---AVINLPRSGG 762
            L E +AE+FG+ELAV  EY FS+ AK A+FTWYGC L+TT     +YVA++TPM +YVNTH QLEA+RD+AL  L  G  +V GPRV+V G TDSGKS+L  +L AYAVRLGR PTFVDLDVGQG +TIPG+++A +LDS ++S+EE  SL APL  FYGH S  ENPEL++ +V R+AEC+++R AND DA+A+G V NTCGWV+GLGL+LL H I    ID+VLVM HD+LYA++ A+   LP       V+ LP SGG
Sbjct:   37 LLEQSAEIFGVELAVNTEYHFSAGAKVAVFTWYGCKLQTTRTAEVLYVAKDTPMLSYVNTHIQLEARRDQALSKLSKGEKAV-GPRVLVAGATDSGKSSLCAVLCAYAVRLGRTPTFVDLDVGQGEITIPGTVSAVSLDSGTLSIEERLSLAAPLTFFYGHDSPGENPELFRHMVSRLAECVEQRQANDRDAAAAGTVVNTCGWVDGLGLELLRHCIDALSIDIVLVMGHDKLYAELMADSEALPDDAPPRTVVKLPTSGG 296
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BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: H3GV05_PHYRM (Protein CLP1 homolog n=12 Tax=Phytophthora TaxID=4783 RepID=H3GV05_PHYRM)

HSP 1 Score: 264 bits (674), Expect = 4.940e-83
Identity = 131/260 (50.38%), Postives = 180/260 (69.23%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIA------VINLPRSGG 762
            LK  +AE+FG+ELA++ EY F   K AIFTWYGCTLE  G     Y +++T M +Y+N HAQL+ +R+ A            GPRV+V G  DSGKSTL +ILA YA+RLG  PT V+LDVG G +++PG+++A+ LD NS+S+EE F LT PL  FYGH +  EN EL++   +++A+ +KRR+AND + +ASG V NTCGWV+G+G  LLLHAIK FE+DVVLV+  DRL++ + ++L  + A      ++ L RSGG
Sbjct:   29 LKSGSAELFGVELAIDREYTFRDRKLAIFTWYGCTLEVRGAPEVAYTSEDTTMDSYLNIHAQLQRRRELAKAK------HAAGPRVLVCGPVDSGKSTLTHILANYALRLGEKPTLVELDVGHGCLSVPGTLSASPLDMNSLSIEEDFILTNPLAFFYGHAAASENVELFRYQQQQLAKAVKRRLANDEEVNASGCVINTCGWVDGMGFDLLLHAIKEFEVDVVLVIGQDRLFSRLQSSLTGANANGVDRSIVKLSRSGG 282
[Close]
BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: D0NWZ0_PHYIT (Pre-mRNA cleavage complex II protein Clp1, putative n=2 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NWZ0_PHYIT)

HSP 1 Score: 261 bits (668), Expect = 1.180e-82
Identity = 130/260 (50.00%), Postives = 178/260 (68.46%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIA------VINLPRSGG 762
            LK  +AE+FG+ELA++ EY F   K AIFTWYGCTLE  G +   Y ++ETPM +Y+N HAQL+ +R+ A            GPRV+V G  DSGKSTL  IL  YA+RLG  PT V+LDVGQG +++PG+I+A+ LD NS+S+EE F LT PL  FYGH +  EN EL++   + +++ +KRR+AND + +ASG V NTCGWV+G G  +L+HAIK F++D+VLV+  DRLY+ + + L  + A      ++ L RSGG
Sbjct:   32 LKSGSAELFGVELAIDREYVFRDRKLAIFTWYGCTLEVRGALEEAYTSEETPMDSYLNIHAQLQRRRELAKAK------HAAGPRVLVCGPVDSGKSTLTQILVNYALRLGEKPTLVELDVGQGCLSVPGTISASPLDMNSLSIEEDFILTNPLAYFYGHAASSENVELFRYQQQVLSKAVKRRLANDEEVNASGCVINTCGWVDGTGFDMLVHAIKDFDVDLVLVIGQDRLYSRLQSALTGANANGADRSIVKLSRSGG 285
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BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: A0A3R7G6W1_9STRA (Protein CLP1 homolog n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G6W1_9STRA)

HSP 1 Score: 261 bits (666), Expect = 7.660e-82
Identity = 133/260 (51.15%), Postives = 180/260 (69.23%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIA------VINLPRSGG 762
            LK  +AE+FG+ELA++ EY F   K AIFTWYGCTLE  G     Y ++ETPM +Y+N HAQL+ +R+  L   + G     GPRV+V G  DSGKSTL  IL  YA+RLG  PT V+LDVG G +++PG+++A+ LD NS+SVEE F LT PL  FYGHT+  EN EL++   +++A+ +KRR+ ND + +A+G V NTCGWV+G+G  LL+HAIK FE+DVVLV+  DRLY+ + + L  + A      ++ L RSGG
Sbjct:   28 LKSGSAELFGVELAIDREYVFRDRKLAIFTWYGCTLEVRGAPEVAYTSEETPMDSYLNIHAQLQRRRE--LAKAKHG----AGPRVLVCGPVDSGKSTLTQILINYALRLGEKPTLVELDVGHGCISVPGTLSASPLDMNSLSVEEEFILTNPLAFFYGHTAPSENVELFRYQQQQLAKVVKRRLTNDEEVNAAGCVVNTCGWVDGVGFDLLVHAIKEFELDVVLVIGQDRLYSRLQSALTGANAGGVERSILKLSRSGG 281
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BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: A0A2D4BR80_PYTIN (Protein CLP1 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR80_PYTIN)

HSP 1 Score: 259 bits (663), Expect = 2.100e-81
Identity = 125/259 (48.26%), Postives = 181/259 (69.88%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLP-----RSIAVINLPRSGG 762
            L   +AE+FG+ELA+ +EY     KAAIFTWYG TL+ TG     Y ++ETPM +Y+N HAQL+ +R+ A+           GPRV++ G  DSGKSTL  IL  YA+RLG  PT VDLDVGQ  +++PGS+AA  LD N +SVEEG+ LT PLV F+GHTS+ EN E ++  +++++  +KRR+A D++A+ASG + NTCGWV+GLG  LL+ +++ F+ DVVLV+  DRL++ + ++L      ++++++ L RSGG
Sbjct:   26 LVSGSAELFGVELAINNEYTLRDQKAAIFTWYGATLQVTGTPEVAYTSEETPMNSYINIHAQLQKRRELAMLK------GSAGPRVLIAGPVDSGKSTLTQILLNYALRLGEKPTHVDLDVGQNSLSVPGSLAATPLDMNCLSVEEGYVLTNPLVYFFGHTSMSENVEHFRSHLQQLSRAVKRRLAEDVEANASGCIINTCGWVDGLGYDLLVESVRAFDADVVLVIGQDRLFSRLQSSLAQQVTSKNLSIVKLVRSGG 278
[Close]
BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: G4YIC2_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIC2_PHYSP)

HSP 1 Score: 257 bits (657), Expect = 4.910e-81
Identity = 130/260 (50.00%), Postives = 175/260 (67.31%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIA------VINLPRSGG 762
            LK  +AE+FG+ELA+  EY F   K AIFTWYGC LE  G     Y ++ETPM +Y+N HAQL+ +R+ A            GPRV+V G  DSGKSTL  IL  YA+RLG  PT V+LDVG G +++PG+++A+ LD NS+SVEE F LT PL  FYGH +  EN EL++   +++A+ +KRR+AND + +ASG V NTCGWV+G+G  LL+ AIK F++DVVLV+  DRLY+ + + L  + A      ++ L RSGG
Sbjct:   27 LKSGSAELFGVELAIGREYVFRDRKLAIFTWYGCALEVRGAPEVAYTSEETPMDSYLNIHAQLQRRRELAKAK------HAAGPRVLVCGPVDSGKSTLTQILVNYALRLGEKPTLVELDVGHGCLSVPGTLSASPLDMNSLSVEEDFILTNPLAFFYGHAASSENVELFRYQQQQLAKAVKRRLANDEEVNASGCVVNTCGWVDGMGFDLLVQAIKDFDVDVVLVIGQDRLYSRLQSTLAGANANGVDRSIVKLARSGG 280
[Close]
BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: A0A3M6VIE0_9STRA (Protein CLP1 homolog n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIE0_9STRA)

HSP 1 Score: 256 bits (655), Expect = 3.540e-80
Identity = 130/260 (50.00%), Postives = 172/260 (66.15%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIA------VINLPRSGG 762
            LK  +AE+FG+ELA++HEY F   K AIFTWYGCTLE  G     Y ++ETPM +Y+N H+QL+  R+ A            GPRV+V G  DSGKSTL  IL  YA+RLG  PT V+LDVG G +++PG+++A+ LD NS+SVEE F LT PL  FYGH    +N EL++   +++A+ +KRR+ ND   +ASG V NTCGWV+G G  LL+HAIK FE+DVVLV+  DRLY+ + + L    A      ++ L RS G
Sbjct:   29 LKSGSAELFGVELAIDHEYVFRDRKVAIFTWYGCTLEVNGAPEVAYTSEETPMDSYLNIHSQLQRCRELAKAK------HAAGPRVLVCGPVDSGKSTLTQILVNYALRLGEKPTLVELDVGHGCLSVPGTLSASPLDMNSLSVEEDFVLTNPLAYFYGHAMSSDNVELFRYQQQQLAKTVKRRLENDAQVNASGCVINTCGWVDGAGFDLLVHAIKDFEVDVVLVIGQDRLYSRLQSTLTGVHANGVDRSIVKLSRSDG 282
[Close]
BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Match: A0A6A4FNY2_9STRA (Protein CLP1 homolog n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FNY2_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.490e-79
Identity = 128/260 (49.23%), Postives = 175/260 (67.31%), Query Frame = 1 
Query:    1 LKENTAEMFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYVNTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYAVRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLFYGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGLGLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIA------VINLPRSGG 762
            LK  +AE+FG+ELA++  Y F   K AIFTWYGCTLE  G     Y ++ETPM +Y+N HAQL+ +R+ A            GPRV+V G  DSGKSTLA IL  YA+RLG  PT V+LDVG G +++PG++AA+ LD N++S+EE F LT PL  FYGH +  EN EL++   +++A  +KRR+AND + +A+G V NTCGWV+G G  LL+ AI+ F++DVVLV+  DRLY+ + + L  + A      ++ L RSGG
Sbjct:   31 LKSGSAELFGVELAIDRSYVFHDRKLAIFTWYGCTLEVRGAPEVAYTSEETPMDSYLNIHAQLQRRRELARAK------RAAGPRVLVCGPADSGKSTLAQILVNYALRLGEKPTLVELDVGHGCLSVPGTLAASPLDMNALSIEEDFVLTNPLAYFYGHAACSENVELFRYQQQQLAAAVKRRLANDEEVNAAGCVVNTCGWVDGTGFDLLVQAIRDFDVDVVLVIGQDRLYSRLQSALTGANANGVDRSIVKLARSGG 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61880.13749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR58_ECTSI1.210e-15787.80Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KLD2_9PHAE1.860e-14787.40Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A835YJV7_9STRA5.570e-9859.39Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID... [more]
H3GV05_PHYRM4.940e-8350.38Protein CLP1 homolog n=12 Tax=Phytophthora TaxID=4... [more]
D0NWZ0_PHYIT1.180e-8250.00Pre-mRNA cleavage complex II protein Clp1, putativ... [more]
A0A3R7G6W1_9STRA7.660e-8251.15Protein CLP1 homolog n=3 Tax=Phytophthora kernovia... [more]
A0A2D4BR80_PYTIN2.100e-8148.26Protein CLP1 homolog n=1 Tax=Pythium insidiosum Ta... [more]
G4YIC2_PHYSP4.910e-8150.00Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A3M6VIE0_9STRA3.540e-8050.00Protein CLP1 homolog n=1 Tax=Peronospora effusa Ta... [more]
A0A6A4FNY2_9STRA1.490e-7949.23Protein CLP1 homolog n=1 Tax=Phytophthora rubi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61880contigH-elongata_contig61880:415..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score447.2
Seed ortholog evalue5e-123
Seed eggNOG ortholog2880.D8LR58
Preferred nameCLP1
KEGG koko:K14399
KEGG Pathwayko03015,map03015
GOsGO:0000003,GO:0000166,GO:0000214,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006388,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009117,GO:0009791,GO:0009892,GO:0009908,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016301,GO:0016310,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019205,GO:0019222,GO:0019438,GO:0019637,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021549,GO:0021695,GO:0021953,GO:0022008,GO:0022037,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030182,GO:0030423,GO:0030554,GO:0030902,GO:0031047,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035087,GO:0035194,GO:0035639,GO:0036094,GO:0040029,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046939,GO:0048367,GO:0048513,GO:0048519,GO:0048608,GO:0048699,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0051731,GO:0051732,GO:0051733,GO:0051734,GO:0051736,GO:0055086,GO:0060255,GO:0060322,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070922,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090567,GO:0097159,GO:0097367,GO:0097659,GO:0099402,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902555,GO:1905348
EggNOG free text desc.mRNA 3'-end processing
EggNOG OGsCOG5623@1,KOG2749@2759
EC2.7.1.78
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons6
Model size762
Cds size741
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.3963032-UTR-H-elongata_contig61880:414..4351622930998.3963032-UTR-H-elongata_contig61880:414..435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61880 415..435 +
1691679656.1799767-UTR-H-elongata_contig61880:414..4351691679656.1799767-UTR-H-elongata_contig61880:414..435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61880 415..435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930998.4078586-CDS-H-elongata_contig61880:435..4891622930998.4078586-CDS-H-elongata_contig61880:435..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 436..489 +
1691679656.189957-CDS-H-elongata_contig61880:435..4891691679656.189957-CDS-H-elongata_contig61880:435..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 436..489 +
1622930998.4193983-CDS-H-elongata_contig61880:847..10271622930998.4193983-CDS-H-elongata_contig61880:847..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 848..1027 +
1691679656.1988099-CDS-H-elongata_contig61880:847..10271691679656.1988099-CDS-H-elongata_contig61880:847..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 848..1027 +
1622930998.4315143-CDS-H-elongata_contig61880:1495..16751622930998.4315143-CDS-H-elongata_contig61880:1495..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 1496..1675 +
1691679656.2063127-CDS-H-elongata_contig61880:1495..16751691679656.2063127-CDS-H-elongata_contig61880:1495..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 1496..1675 +
1622930998.445949-CDS-H-elongata_contig61880:1893..19801622930998.445949-CDS-H-elongata_contig61880:1893..1980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 1894..1980 +
1691679656.2162483-CDS-H-elongata_contig61880:1893..19801691679656.2162483-CDS-H-elongata_contig61880:1893..1980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 1894..1980 +
1622930998.4657748-CDS-H-elongata_contig61880:2865..29481622930998.4657748-CDS-H-elongata_contig61880:2865..2948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 2866..2948 +
1691679656.2239144-CDS-H-elongata_contig61880:2865..29481691679656.2239144-CDS-H-elongata_contig61880:2865..2948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 2866..2948 +
1622930998.5380962-CDS-H-elongata_contig61880:3157..33141622930998.5380962-CDS-H-elongata_contig61880:3157..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 3158..3314 +
1691679656.231685-CDS-H-elongata_contig61880:3157..33141691679656.231685-CDS-H-elongata_contig61880:3157..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61880 3158..3314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61880.13749.1prot_H-elongata_contig61880.13749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61880 436..3314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61880.13749.1

>prot_H-elongata_contig61880.13749.1 ID=prot_H-elongata_contig61880.13749.1|Name=mRNA_H-elongata_contig61880.13749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
MFGIELAVEHEYRFSSAKAAIFTWYGCTLETTGWVSSVYVAQETPMKAYV
NTHAQLEAKRDKALQALQTGNTSVTGPRVMVVGETDSGKSTLANILAAYA
VRLGRCPTFVDLDVGQGMVTIPGSIAAAALDSNSMSVEEGFSLTAPLVLF
YGHTSLQENPELYKVLVERMAECLKRRVANDIDASASGAVFNTCGWVEGL
GLQLLLHAIKTFEIDVVLVMKHDRLYADMNANLPRSIAVINLPRSGG
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mRNA from alignment at H-elongata_contig61880:415..3314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61880.13749.1 ID=mRNA_H-elongata_contig61880.13749.1|Name=mRNA_H-elongata_contig61880.13749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2900bp|location=Sequence derived from alignment at H-elongata_contig61880:415..3314+ (Himanthalia elongata Himel1 dioecious)
CTGAAGGAGAACACGGCTGAGATGTTCGGCATAGAGCTTGCGGTGGAGCA
CGAGTACCGGTTCTCTTCTGCTAAGGTCAGCTATTTCCTGTGCCCAAAGA
AACTGCGGTGAGGAAGGTCTCTCAATATACATACTCCCGTTGGTGTACAG
GCTGGAGCCTCTCTGTCGGCGAGAGCGATAAAAGTTATATGTTCTCTCCA
TAACCTGTCCGTAGTCCAGCTCTCGCCACGCGGAGCGAAAAATGTCGGGT
AAAGAGAAAACGCACATTCCTTGCATTAGCGGCCCCGCCTCCGCGTGGAG
TACAAACCAGTGCCATACAAAGAGAATCGATGGACGTCCCCAATCTACTC
CCTCTGTCTTACGGGCGTGACGTGCATCGATTGTGGTGACCTGCTTCATA
AAATTATTCTCGCCGTGCGTGGGATGGTCCCAGGCGGCGATATTTACGTG
GTATGGGTGCACCCTCGAGACGACGGGGTGGGTGTCAAGTGTCTACGTAG
CGCAGGAGACCCCGATGAAGGCGTACGTGAACACCCACGCGCAGCTGGAG
GCGAAGAGGGACAAAGCGCTACAGGCTTTGCAGACCGGCAACACCAGCGT
TACTGGCCCGCGGGTGGGTGATGCGCGCTCTACGCCTGGCTAAAAGCGTG
CGATCTCGGTGACGTCACTGTTTGACAGATGCCTCTCGGGGATGAAAATA
CGCACTCTCGAGAGCGAAATTATGTGAGGTCTCTAGGGAGCGTTGACTCT
AGCGTGCAAGGTGTGCGTACTGATCGGTCGGGGGGTTTTTAATAGAGTGG
ATCCAAAGCACGGATGCGGAAAGAAGGAAGGATATGACCCGCCGCTCCCC
CCCAAGCTTTTCGCGAAAAATTCCTGACAAACGTGGTCACTCGTGTACGA
TCCCCTTGAATCGGCATTCGATTGAAAAGTGGCCAGCTGGTGCGCAGTAC
TGGACGGTGACGAATCTGAGAACATGGAACGCCATCTACAGTCGAAGCGA
TGGCCGAATCTTCGCTCGCCGTTCTTGTGCGCTGCACCCACATTGACTGA
TCACCGACTGATGTGGACGCTCAAAACCAAGGTCATGGTGGTCGGAGAAA
CGGACAGCGGGAAATCAACGCTGGCTAACATACTCGCGGCTTACGCCGTG
CGATTGGGACGGTGTCCCACCTTCGTTGACCTCGACGTGGGGCAAGGGAT
GGTGACCATCCCTGGGTCTATTGCAGCCGCCGCGCTGGACAGCAACTCCA
TGTCCGTAGAGGTAAGCCCATCTGGAGACTTCATTTGTCGACTCGCTCAT
CTTGCGACGGGCGCGCGCGCATAGGACTCGGATTGTGGACGAAGATATCT
CTTCCGACGAGTGTATCCAACACTTCCCCTTGCTGTAACCCCCTCGCCAA
TATGTTTAATCGATCATTAGTCCAGTCTCGACGTGCTTACGACGTATAAT
TTGTCCATTTCTACTGCTGTTGTTTGCAGGAGGGATTCTCGTTGACGGCA
CCGCTGGTGCTTTTCTACGGCCACACGAGCCTGCAGGAGAACCCAGAGCT
GTATAAAGTACTCGTGGTACGGAGTCGTGCGCGGCAGCGATTAGTTTTTG
CGGGAAGGGAGGGAGTGGAGAGGAAGACGGGGAGGGCTCGTGGGACAGGG
AGGCGCACTGATTCGGTCCCGCACTGCAATGTATCCCGACGTAGCCAGCG
AAAGTGATCGGACGCCCCCCCTAGTCCGCCGCATTCATACAACTGTAATA
GTTTTACTCAAAATCACCACCCTGTGATGAGACAAGCCTGCCGGAGCAAC
CCTCGTAAAGGATGTTGCTTTGAAGTGCGTAGCGGGCGCGACCAACTCGA
CGAGAAATAGGCGGGTACAAATTTCTTCGCGATGCAAGTGGTTTAAATGG
CAGCGCTGCTGTGTCCTTCTTCTATGTTCATATCAGTGATGGAGATCGGT
ATCAAAATCAGTGCCGATCTGAATTTTAATATATTAAAAAAGGCGATTTT
CGAAAAAAAAAAAATGTCTTTGACGAAAGTGGCCGATCTTCCGATCTCAA
CCCCTACTAGCCTACTAGGTTGAAGTATTAGATTGAAATTCTCAACTTCA
CGAAAAAGCTGTTTTAAAAGAGCTTTCGTGAAATTGAGAATTGGAAGGTG
TTGTTTGAAAGTGCTCGATTTCCATTTCCAAGGCTGACTTTCAATCCAAT
ACTTCACTCTCAATTTCACGAAAACCCTGTTACATGTATATTTTTCGGTA
TTTTGGGGGCCCCGTGCCTCAGGAAGATCGAAATCGGCAATTCCGATCTT
CGATCTCGATCCAGAATTGGAAGATCGGGCAAAATATTTTCGATTCTGAT
CTTAGAGAATCGCCAATCAATCGAAGATCAGATCGGCCATTCGATTCACG
ATCTCCATCACTGATATATCCGCCGTCGTTTACACACGTCTGCGTACGTA
GGAACGTATGGCGGAGTGCCTGAAGAGGCGAGTGGCCAACGACATCGACG
CAAGCGCATCAGGAGCGGTATTTAATACGTGCGGGTGAGAGACAGACAAG
TCACACTAAAAGCTCTCGCTGCGTTAAAAAAAAAACACCGTAGCCTCGGC
GTATAGCAAAAACGGGTCACGTAAACGCCAACCTTCACCATTCCCATCGA
TCGGATGAGTATTTCCTTGTCGAAGGAATTATGTGTGAGTGGGTCAGGTG
AGCCTGTTTGGACGTGCCTCTTCCTTAACATGTGTGTATGTAGGTGGGTG
GAGGGTCTAGGTCTGCAGCTGCTGTTGCACGCGATCAAAACGTTCGAGAT
CGACGTGGTCTTGGTGATGAAGCACGATCGTCTCTACGCAGATATGAACG
CCAACCTTCCTCGGTCCATCGCGGTCATCAACTTGCCAAGATCGGGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig61880:415..3314+

>mRNA_H-elongata_contig61880.13749.1 ID=mRNA_H-elongata_contig61880.13749.1|Name=mRNA_H-elongata_contig61880.13749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig61880:415..3314+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCATAGAGCTTGCGGTGGAGCACGAGTACCGGTTCTCTTCTGC
TAAGATGTTCGGCATAGAGCTTGCGGTGGAGCACGAGTACCGGTTCTCTT
CTGCTAAGGCGGCGATATTTACGTGGTATGGGTGCACCCTCGAGACGACG
GGGTGGGTGTCAAGTGTCTACGTAGCGCAGGAGACCCCGATGAAGGCGTA
CGTGAACACCCACGCGCAGCTGGAGGCGAAGAGGGACAAAGCGCTACAGG
CTTTGCAGACCGGCAACACCAGCGTTACTGGCCCGCGGGCGGCGATATTT
ACGTGGTATGGGTGCACCCTCGAGACGACGGGGTGGGTGTCAAGTGTCTA
CGTAGCGCAGGAGACCCCGATGAAGGCGTACGTGAACACCCACGCGCAGC
TGGAGGCGAAGAGGGACAAAGCGCTACAGGCTTTGCAGACCGGCAACACC
AGCGTTACTGGCCCGCGGGTCATGGTGGTCGGAGAAACGGACAGCGGGAA
ATCAACGCTGGCTAACATACTCGCGGCTTACGCCGTGCGATTGGGACGGT
GTCCCACCTTCGTTGACCTCGACGTGGGGCAAGGGATGGTGACCATCCCT
GGGTCTATTGCAGCCGCCGCGCTGGACAGCAACTCCATGTCCGTAGAGGT
CATGGTGGTCGGAGAAACGGACAGCGGGAAATCAACGCTGGCTAACATAC
TCGCGGCTTACGCCGTGCGATTGGGACGGTGTCCCACCTTCGTTGACCTC
GACGTGGGGCAAGGGATGGTGACCATCCCTGGGTCTATTGCAGCCGCCGC
GCTGGACAGCAACTCCATGTCCGTAGAGGAGGGATTCTCGTTGACGGCAC
CGCTGGTGCTTTTCTACGGCCACACGAGCCTGCAGGAGAACCCAGAGCTG
TATAAAGTACTCGTGGAGGGATTCTCGTTGACGGCACCGCTGGTGCTTTT
CTACGGCCACACGAGCCTGCAGGAGAACCCAGAGCTGTATAAAGTACTCG
TGGAACGTATGGCGGAGTGCCTGAAGAGGCGAGTGGCCAACGACATCGAC
GCAAGCGCATCAGGAGCGGTATTTAATACGTGCGGGAACGTATGGCGGAG
TGCCTGAAGAGGCGAGTGGCCAACGACATCGACGCAAGCGCATCAGGAGC
GGTATTTAATACGTGCGGGTGGGTGGAGGGTCTAGGTCTGCAGCTGCTGT
TGCACGCGATCAAAACGTTCGAGATCGACGTGGTCTTGGTGATGAAGCAC
GATCGTCTCTACGCAGATATGAACGCCAACCTTCCTCGGTCCATCGCGGT
CATCAACTTGCCAAGATCGGGAGGTGTGGGTGGAGGGTCTAGGTCTGCAG
CTGCTGTTGCACGCGATCAAAACGTTCGAGATCGACGTGGTCTTGGTGAT
GAAGCACGATCGTCTCTACGCAGATATGAACGCCAACCTTCCTCGGTCCA
TCGCGGTCATCAACTTGCCAAGATCGGGAGGT
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