mRNA_H-elongata_contig61792.13738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61792.13738.1
Unique NamemRNA_H-elongata_contig61792.13738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61792.13738.1 vs. uniprot
Match: D7G0G4_ECTSI (ATP binding / ATP-dependent helicase/ DNA binding / DNA-directed DNA polymerase/ helicase/ nucleic a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0G4_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.130e-19
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 2 
Query:    2 ALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSAGWDESEERYQWKQTERLAQNVIRLADKEILRQLRERLA 217
            ALL+AGYPSPLELA AD   VA V +RC PFRSAGWDES ERY+ KQ  RLAQNVI LA  E++RQ+  RLA
Sbjct: 1456 ALLKAGYPSPLELATADASRVADVLLRCAPFRSAGWDESVERYRAKQASRLAQNVIHLASAEVMRQIHRRLA 1527
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61792.13738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0G4_ECTSI1.130e-1969.44ATP binding / ATP-dependent helicase/ DNA binding ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61792contigH-elongata_contig61792:253..1729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size923
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61792.13738.1prot_H-elongata_contig61792.13738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61792 334..846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.9004025-UTR-H-elongata_contig61792:252..3331622930996.9004025-UTR-H-elongata_contig61792:252..333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61792 253..333 -
1691679655.4350932-UTR-H-elongata_contig61792:252..3331691679655.4350932-UTR-H-elongata_contig61792:252..333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61792 253..333 -
1622930996.933158-UTR-H-elongata_contig61792:846..10541622930996.933158-UTR-H-elongata_contig61792:846..1054Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61792 847..1054 -
1691679655.4620235-UTR-H-elongata_contig61792:846..10541691679655.4620235-UTR-H-elongata_contig61792:846..1054Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61792 847..1054 -
1622930996.9466987-UTR-H-elongata_contig61792:1608..17291622930996.9466987-UTR-H-elongata_contig61792:1608..1729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61792 1609..1729 -
1691679655.4728599-UTR-H-elongata_contig61792:1608..17291691679655.4728599-UTR-H-elongata_contig61792:1608..1729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61792 1609..1729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.9179528-CDS-H-elongata_contig61792:333..8461622930996.9179528-CDS-H-elongata_contig61792:333..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61792 334..846 -
1691679655.4457068-CDS-H-elongata_contig61792:333..8461691679655.4457068-CDS-H-elongata_contig61792:333..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61792 334..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61792.13738.1

>prot_H-elongata_contig61792.13738.1 ID=prot_H-elongata_contig61792.13738.1|Name=mRNA_H-elongata_contig61792.13738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MILWVKVKYGGLQSWLFNCRCAKGVGYNNTVNAPIVAVWYSERQTTLYEY
SVNHRYCTLKIETVTVPVLLFLLPFGTCNFVIVIACSHCGACKTQVCNLI
AVIGRQGGKVARIFLLLKCRVIGFQRRKWQVLSEGDKTHHDVIIKSCLPD
TLLVVVLMILIVALALAAYK*
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mRNA from alignment at H-elongata_contig61792:253..1729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61792.13738.1 ID=mRNA_H-elongata_contig61792.13738.1|Name=mRNA_H-elongata_contig61792.13738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-elongata_contig61792:253..1729- (Himanthalia elongata Himel1 dioecious)
GGCGCTACTGGAGGCGGGATACCCTAGCCCCTTGGAGCTGGCCGGTGCAG
ACTGCGTACACGTAGCTAAGGTGTTCATGCGATGCTTGCCCTTCCGGAGC
GCCGGTTGGGACGAGTCTGAGGTGAGTTGGCTCGTTAATTGGTGAGAGTC
GTCCATAAGATGCTTGCTCTCTTGCTGCTGTCGAAAGCGACAGACACAAA
CCCCGTGAGTATTTTCCCCTCGTATGTAGTATTTTAAAAATATTGATTCC
ATTTGATCTCATCTGTGGTGCGCGTGAATATCCGCCGATCGATGTGAAGA
CGATTGAGACCCTAGCTCTAGGTGTCCTTCGCATCAGCGTTAGAATCATA
GTGGTAGTGGCAGGGACAGTGACAGTGACAGTGACGGTGACGGTGACGGT
GACGTGTTGCTACTGAAAAGTTACTCTTTGATTATGTAGGCTACTAATGG
TCGTAAAGTGTGAACGCTGAAGACTAACCACCCCCTTTTCCCGAACTCTT
ATCCTGAAGATATCCCTAAAGGCGCACGGCGTTTGACTTTGCTTTGGAGA
TCATGTAATCTGGTTTGCACAGTCAACGTGCATTGAGTTAATAACGTGAT
GTATTTTCTTGTGCTTACGGGGAGGAAATGGCTTGACGTTGGTGTGCTGT
TTTCCTTGGATCGACTCTTGCACAGGAACGATATCAATGGAAGCAGACCG
AGCGCTTGGCTCAGAACGTCATACGTCTCGCGGACAAGGAGATCCTGCGT
CAGCTTCGCGAGCGCTTGGCGGGCGGGCGTCTGGATTAATAAGAGAGCTA
TCAATAGCGGCTCTCGAGTAGTACTAGTACTTCGTATGATATTAGTGACT
TTCAAAATACTTAGCGAGGAGTAGTGATATTCTATGATCCTATGGGTAAA
GGTGAAATATGGTGGGTTACAATCGTGGCTATTCAATTGTAGATGTGCTA
AGGGTGTCGGGTACAACAATACGGTGAACGCCCCGATAGTGGCTGTTTGG
TATAGCGAGAGGCAAACAACACTGTACGAGTACTCTGTTAACCACCGTTA
CTGTACCCTGAAAATAGAAACCGTTACTGTACCGGTTTTATTATTTCTTC
TCCCTTTTGGCACCTGTAACTTTGTCATTGTGATTGCGTGCTCTCATTGT
GGGGCGTGTAAGACCCAAGTTTGCAACCTTATCGCAGTCATCGGACGGCA
GGGAGGTAAAGTCGCGCGTATTTTTCTTCTTCTGAAATGTCGGGTTATTG
GATTTCAGCGAAGAAAGTGGCAGGTATTGAGTGAGGGGGATAAAACTCAC
CATGATGTCATAATCAAGTCGTGCCTTCCGGATACCCTCCTGGTAGTTGT
GTTAATGATATTAATAGTAGCTCTAGCTCTAGCCGCATACAAATAATATA
TTAGCCCTTCTAATTAGAGTCATGTTATCGATAGTTATCGACGGTATTCT
GCCATGTAAGACACTTATACTTCATCG
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Coding sequence (CDS) from alignment at H-elongata_contig61792:253..1729-

>mRNA_H-elongata_contig61792.13738.1 ID=mRNA_H-elongata_contig61792.13738.1|Name=mRNA_H-elongata_contig61792.13738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig61792:253..1729- (Himanthalia elongata Himel1 dioecious)
ATGATCCTATGGGTAAAGGTGAAATATGGTGGGTTACAATCGTGGCTATT
CAATTGTAGATGTGCTAAGGGTGTCGGGTACAACAATACGGTGAACGCCC
CGATAGTGGCTGTTTGGTATAGCGAGAGGCAAACAACACTGTACGAGTAC
TCTGTTAACCACCGTTACTGTACCCTGAAAATAGAAACCGTTACTGTACC
GGTTTTATTATTTCTTCTCCCTTTTGGCACCTGTAACTTTGTCATTGTGA
TTGCGTGCTCTCATTGTGGGGCGTGTAAGACCCAAGTTTGCAACCTTATC
GCAGTCATCGGACGGCAGGGAGGTAAAGTCGCGCGTATTTTTCTTCTTCT
GAAATGTCGGGTTATTGGATTTCAGCGAAGAAAGTGGCAGGTATTGAGTG
AGGGGGATAAAACTCACCATGATGTCATAATCAAGTCGTGCCTTCCGGAT
ACCCTCCTGGTAGTTGTGTTAATGATATTAATAGTAGCTCTAGCTCTAGC
CGCATACAAATAAATGATCCTATGGGTAAAGGTGAAATATGGTGGGTTAC
AATCGTGGCTATTCAATTGTAGATGTGCTAAGGGTGTCGGGTACAACAAT
ACGGTGAACGCCCCGATAGTGGCTGTTTGGTATAGCGAGAGGCAAACAAC
ACTGTACGAGTACTCTGTTAACCACCGTTACTGTACCCTGAAAATAGAAA
CCGTTACTGTACCGGTTTTATTATTTCTTCTCCCTTTTGGCACCTGTAAC
TTTGTCATTGTGATTGCGTGCTCTCATTGTGGGGCGTGTAAGACCCAAGT
TTGCAACCTTATCGCAGTCATCGGACGGCAGGGAGGTAAAGTCGCGCGTA
TTTTTCTTCTTCTGAAATGTCGGGTTATTGGATTTCAGCGAAGAAAGTGG
CAGGTATTGAGTGAGGGGGATAAAACTCACCATGATGTCATAATCAAGTC
GTGCCTTCCGGATACCCTCCTGGTAGTTGTGTTAATGATATTAATAGTAG
CTCTAGCTCTAGCCGCATACAAATAA
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