mRNA_H-elongata_contig61751.13734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61751.13734.1
Unique NamemRNA_H-elongata_contig61751.13734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61751.13734.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.660e-10
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    4 VSFDWEVDLTRPETKVLDGPDPVTTDGSAEFLFACELDGESLEYNRECLYEYQI 165
            V  DWEVDLTRPET+V+  P PV T G A F FAC L GE  E +  C Y+YQ+
Sbjct: 1021 VKVDWEVDLTRPETRVVSRPSPVMTTGVAAFQFACSLAGE--EPSHGCFYQYQM 1072
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BLAST of mRNA_H-elongata_contig61751.13734.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 7.660e-10
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   13 DWEVDLTRPETKVLDGPDPVTTDGSAEFLFACELDGESLEYNRECLYEYQISTART 180
            DWEVDLTRPET+V+  P PV T G A F FAC L GE  E +  C Y+YQ+  A +
Sbjct: 1218 DWEVDLTRPETRVVSRPSPVMTTGVAAFQFACSLAGE--EPSHGCFYQYQMMVANS 1271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61751.13734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K857_9PHAE7.660e-1057.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK9_ECTSI7.660e-1055.36OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61751contigH-elongata_contig61751:424..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D8LBK9
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.3206472-CDS-H-elongata_contig61751:423..6301622930996.3206472-CDS-H-elongata_contig61751:423..630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61751 424..630 -
1691679655.1547163-CDS-H-elongata_contig61751:423..6301691679655.1547163-CDS-H-elongata_contig61751:423..630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61751 424..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61751.13734.1prot_H-elongata_contig61751.13734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61751 424..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61751.13734.1

>prot_H-elongata_contig61751.13734.1 ID=prot_H-elongata_contig61751.13734.1|Name=mRNA_H-elongata_contig61751.13734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MVSFDWEVDLTRPETKVLDGPDPVTTDGSAEFLFACELDGESLEYNRECL
YEYQISTARTVSEAETEVD
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mRNA from alignment at H-elongata_contig61751:424..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61751.13734.1 ID=mRNA_H-elongata_contig61751.13734.1|Name=mRNA_H-elongata_contig61751.13734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig61751:424..630- (Himanthalia elongata Himel1 dioecious)
ATGGTGTCATTCGACTGGGAGGTGGACCTGACGCGGCCGGAAACGAAGGT
GCTGGACGGGCCGGACCCCGTTACGACGGACGGGTCCGCGGAGTTCCTGT
TCGCGTGTGAGTTGGACGGGGAGAGCCTGGAGTACAATCGGGAGTGCCTG
TACGAGTACCAGATTTCGACGGCGAGGACAGTGTCGGAGGCGGAGACCGA
GGTGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig61751:424..630-

>mRNA_H-elongata_contig61751.13734.1 ID=mRNA_H-elongata_contig61751.13734.1|Name=mRNA_H-elongata_contig61751.13734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig61751:424..630- (Himanthalia elongata Himel1 dioecious)
ATGGTGTCATTCGACTGGGAGGTGGACCTGACGCGGCCGGAAACGAAGGT
GCTGGACGGGCCGGACCCCGTTACGACGGACGGGTCCGCGGAGTTCCTGT
TCGCGTGTGAGTTGGACGGGGAGAGCCTGGAGTACAATCGGGAGTGCCTG
TACGAGTACCAGATTTCGACGGCGAGGACAGTGTCGGAGGCGGAGACCGA
GGTGGATATGGTGTCATTCGACTGGGAGGTGGACCTGACGCGGCCGGAAA
CGAAGGTGCTGGACGGGCCGGACCCCGTTACGACGGACGGGTCCGCGGAG
TTCCTGTTCGCGTGTGAGTTGGACGGGGAGAGCCTGGAGTACAATCGGGA
GTGCCTGTACGAGTACCAGATTTCGACGGCGAGGACAGTGTCGGAGGCGG
AGACCGAGGTGGAT
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