mRNA_H-elongata_contig6175.13733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6175.13733.1
Unique NamemRNA_H-elongata_contig6175.13733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6175.13733.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.290e-27
Identity = 108/341 (31.67%), Postives = 147/341 (43.11%), Query Frame = 1 
Query:   31 LRTAVDVRALSLNSAIRRLRIEGNPFCTKEAEHGSYEVAIQHLVPGMSLLDGKPLPGLACPTPSLPSSPPVSCTLY------------HGVGVQPHRT-------ISLEAKLAGCNDQG-----------DISITRRWRELAIVTMGREDPIKP--HEQVVKKTWSR------------------------TGGGGPTVEPGSYADIFQDSQRNR-RRGAAVSPGPAAGSTAIVTTTTTAHTDNCGMIKEDRATVRRREAMPSHR---------------------------------------------------GLTRVERAAARRLAWSQARYDDTLG 729
            L+T  DVRALSLN+A+RRLRIEGNP+C+   +HG+Y++A+QHL+PGM LLDGKP   L+    SL S+ P+                 H     PHRT        S + + +G   +G           D+S+ RRWR+ A+          P  H++       R                        TGGGGPTV PGSYA+IF  + R +     AV   PAA +TA V+ ++T      G++    AT R+++  P HR                                                   GL+R ER AARR AWSQAR +  +G
Sbjct:  291 LKTKEDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPPQVLSL---SLSSTMPLXXXXXXXXXGKPADHHRHNSRRMPHRTSRGPPSSCSPDRRGSGSIREGFMAASSLDFVGDLSVERRWRDSAVAGKSLYPQFAPDSHQRAAASGGVRGGARARXXXXXXXXXGREPCIKVTTGGGGPTVAPGSYAEIFVAAMRKQGSTSRAVVDDPAAFTTAGVSNSSTLAPTQKGVVGTV-ATERQQQQQPGHRAAAQASHGETSVAAAYRPGKRRIPAGGAEVXXXXXXXXXXXAATASLLSYRGLSRAERGAARREAWSQARREGAVG 627
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BLAST of mRNA_H-elongata_contig6175.13733.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.070e-25
Identity = 79/207 (38.16%), Postives = 106/207 (51.21%), Query Frame = 1 
Query:   28 LLRTAVDVRALSLNSAIRRLRIEGNPFCTKEAEHGSYEVAIQHLVPGMSLLDGKPLPGLACPTPSLPSSPPVSCTLY------------HGVGVQPHRT-------ISLEAKLAGCNDQG-----------DISITRRWRELAIVTMGREDPIKPHEQVVKKTWSR------------------------TGGGGPTVEPGSYADIF 486
            LL+T VDVRALSLN+A+RRLRIEGNP+C+   +HG+Y++A+QHL+PGMSLLDGK  P L+    SL S+ P+                 H     PHRT        S + + +G   +G           D+S+ RRWR+ A+    +  P   H++ V +   R                        TGGGGPTV PGSYA+IF
Sbjct:  237 LLKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMSLLDGKAPPVLSL---SLSSTMPLPXXXXXXXXGKPGDHHRHNSRRMPHRTSRGTPSSCSPDRRGSGSIREGFMASSSLDFVGDLSVERRWRDSAVAGRSQFTPDS-HQRAVARGGVRGGVRVRGGGDGNGGRGREPCIKVTTGGGGPTVAPGSYAEIF 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6175.13733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT2_9PHAE2.290e-2731.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE3_ECTSI2.070e-2538.16Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6175contigH-elongata_contig6175:9864..10778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue4.2e-24
Seed eggNOG ortholog2880.D8LKE3
KEGG koko:K16606,ko:K19750
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_002670.1
Exons2
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.2167296-CDS-H-elongata_contig6175:9863..99881622930996.2167296-CDS-H-elongata_contig6175:9863..9988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 9864..9988 -
1691679655.1313639-CDS-H-elongata_contig6175:9863..99881691679655.1313639-CDS-H-elongata_contig6175:9863..9988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 9864..9988 -
1622930996.248184-CDS-H-elongata_contig6175:10135..107781622930996.248184-CDS-H-elongata_contig6175:10135..10778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 10136..10778 -
1691679655.143738-CDS-H-elongata_contig6175:10135..107781691679655.143738-CDS-H-elongata_contig6175:10135..10778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 10136..10778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6175.13733.1prot_H-elongata_contig6175.13733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6175 9864..10778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6175.13733.1

>prot_H-elongata_contig6175.13733.1 ID=prot_H-elongata_contig6175.13733.1|Name=mRNA_H-elongata_contig6175.13733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
VRQADLSHNLLRTAVDVRALSLNSAIRRLRIEGNPFCTKEAEHGSYEVAI
QHLVPGMSLLDGKPLPGLACPTPSLPSSPPVSCTLYHGVGVQPHRTISLE
AKLAGCNDQGDISITRRWRELAIVTMGREDPIKPHEQVVKKTWSRTGGGG
PTVEPGSYADIFQDSQRNRRRGAAVSPGPAAGSTAIVTTTTTAHTDNCGM
IKEDRATVRRREAMPSHRGLTRVERAAARRLAWSQARYDDTLGPRTAQRR
RTISRR
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mRNA from alignment at H-elongata_contig6175:9864..10778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6175.13733.1 ID=mRNA_H-elongata_contig6175.13733.1|Name=mRNA_H-elongata_contig6175.13733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig6175:9864..10778- (Himanthalia elongata Himel1 dioecious)
GTGCGTCAGGCGGACCTTTCACATAATCTCCTGAGAACAGCGGTGGACGT
CCGGGCGCTATCCCTCAACTCCGCCATCCGCCGCCTGCGCATTGAGGGCA
ACCCTTTCTGCACAAAGGAGGCCGAACATGGGAGCTATGAGGTAGCCATA
CAGCACCTTGTACCCGGCATGAGCCTCCTTGATGGTAAACCTCTTCCAGG
GCTGGCTTGTCCTACTCCTTCTCTGCCGTCGTCGCCACCGGTAAGTTGCA
CCCTGTACCATGGAGTGGGGGTCCAACCTCATCGCACGATTTCATTGGAG
GCCAAACTCGCTGGTTGTAATGATCAAGGTGATATCAGCATCACCCGAAG
GTGGCGCGAGTTGGCGATTGTAACGATGGGTAGAGAGGATCCCATCAAAC
CACACGAGCAGGTCGTTAAAAAGACCTGGTCAAGGACGGGAGGTGGGGGT
CCCACAGTGGAACCCGGATCTTATGCGGATATTTTCCAAGACTCGCAACG
CAACAGACGACGCGGCGCTGCTGTCTCTCCTGGTCCAGCAGCTGGATCGA
CGGCCATCGTGACCACCACTACCACCGCACACACCGATAATTGCGGTATG
ATCAAGGAAGATCGTGCAACAGTTCGTCGCAGAGAGGCGATGCGTGCTAC
GGTGAACAGTGCTTCCAGACCGATTAACTTGCGCGTACGAGAACCCACTG
GGCCCAAGGCCGGTGATCATGATATTGATAGAATCAGTGTTGGTGCACGG
CGAGCACATCGTGCCATCTACCCCCCTCAAAATTTGCTAGCCTCGCACCG
CGGGCTTACGAGGGTGGAGCGGGCGGCGGCGCGTCGCCTGGCGTGGAGTC
AGGCGCGATATGACGATACTCTCGGTCCACGAACAGCGCAAAGACGTCGC
ACAATATCGAGGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig6175:9864..10778-

>mRNA_H-elongata_contig6175.13733.1 ID=mRNA_H-elongata_contig6175.13733.1|Name=mRNA_H-elongata_contig6175.13733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig6175:9864..10778- (Himanthalia elongata Himel1 dioecious)
GTGCGTCAGGCGGACCTTTCACATAATCTCCTGAGAACAGCGGTGGACGT
CCGGGCGCTATCCCTCAACTCCGCCATCCGCCGCCTGCGCATTGAGGGCA
ACCCTTTCTGCACAAAGGAGGCCGAACATGGGAGCTATGAGGTAGCCATA
CAGCACCTTGTACCCGGCATGAGCCTCCTTGATGGTAAACCTCTTCCAGG
GCTGGCTTGTCCTACTCCTTCTCTGCCGTCGTCGCCACCGGTAAGTTGCA
CCCTGTACCATGGAGTGGGGGTCCAACCTCATCGCACGATTTCATTGGAG
GCCAAACTCGCTGGTTGTAATGATCAAGGTGATATCAGCATCACCCGAAG
GTGGCGCGAGTTGGCGATTGTAACGATGGGTAGAGAGGATCCCATCAAAC
CACACGAGCAGGTCGTTAAAAAGACCTGGTCAAGGACGGGAGGTGGGGGT
CCCACAGTGGAACCCGGATCTTATGCGGATATTTTCCAAGACTCGCAACG
CAACAGACGACGCGGCGCTGCTGTCTCTCCTGGTCCAGCAGCTGGATCGA
CGGCCATCGTGACCACCACTACCACCGCACACACCGATAATTGCGGTATG
ATCAAGGAAGATCGTGCAACAGTTCGTCGCAGAGAGGCGATGCGTGCGTC
AGGCGGACCTTTCACATAATCTCCTGAGAACAGCGGTGGACGTCCGGGCG
CTATCCCTCAACTCCGCCATCCGCCGCCTGCGCATTGAGGGCAACCCTTT
CTGCACAAAGGAGGCCGAACATGGGAGCTATGAGGTAGCCATACAGCACC
TTGTACCCGGCATGAGCCTCCTTGATGGTAAACCTCTTCCAGGGCTGGCT
TGTCCTACTCCTTCTCTGCCGTCGTCGCCACCGGTAAGTTGCACCCTGTA
CCATGGAGTGGGGGTCCAACCTCATCGCACGATTTCATTGGAGGCCAAAC
TCGCTGGTTGTAATGATCAAGGTGATATCAGCATCACCCGAAGGTGGCGC
GAGTTGGCGATTGTAACGATGGGTAGAGAGGATCCCATCAAACCACACGA
GCAGGTCGTTAAAAAGACCTGGTCAAGGACGGGAGGTGGGGGTCCCACAG
TGGAACCCGGATCTTATGCGGATATTTTCCAAGACTCGCAACGCAACAGA
CGACGCGGCGCTGCTGTCTCTCCTGGTCCAGCAGCTGGATCGACGGCCAT
CGTGACCACCACTACCACCGCACACACCGATAATTGCGGTATGATCAAGG
AAGATCGTGCAACAGTTCGTCGCAGAGAGGCGATGCCCTCGCACCGCGGG
CTTACGAGGGTGGAGCGGGCGGCGGCGCGTCGCCTGGCGTGGAGTCAGGC
GCGATATGACGATACTCTCGGTCCACGAACAGCGCAAAGACGTCGCACAA
TATCGAGGAGACCTCGCACCGCGGGCTTACGAGGGTGGAGCGGGCGGCGG
CGCGTCGCCTGGCGTGGAGTCAGGCGCGATATGACGATACTCTCGGTCCA
CGAACAGCGCAAAGACGTCGCACAATATCGAGGAGA
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