mRNA_H-elongata_contig6175.13732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6175.13732.1
Unique NamemRNA_H-elongata_contig6175.13732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: D8LKE0_ECTSI (Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE0_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 2.600e-105
Identity = 162/227 (71.37%), Postives = 188/227 (82.82%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAM-------AIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLA 657
            ++S+IIATGAEAIWLGAEGE++VKG+GVSTCATCDGAFYEGKE +V GGGDSAMEE+LFLTKFASKVT+VHRR GFR+S+IMLERV+D+PKI +KL+R VK+ V   G L+GA LEDPRG +       + LPCSGAFL+IGHKPMTKFL S+ ++                +ELDEDGF++HK HTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLA
Sbjct:  172 AKSIIIATGAEAIWLGAEGEEQVKGRGVSTCATCDGAFYEGKEVVVVGGGDSAMEEALFLTKFASKVTIVHRRDGFRSSRIMLERVKDNPKIHLKLHRTVKKWVSEGGDLSGAELEDPRGQD-----AVELLPCSGAFLAIGHKPMTKFLHSISSSXXXXXXXXXXXXXXSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLA 393          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A367I9L2_9ARCH (Thioredoxin-disulfide reductase n=13 Tax=Archaea TaxID=2157 RepID=A0A367I9L2_9ARCH)

HSP 1 Score: 265 bits (676), Expect = 1.760e-85
Identity = 140/223 (62.78%), Postives = 168/223 (75.34%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAGNV 666
            + +LII TGAEAIWLG EGE+E KG+G+STCATCDGAF+  +E IV GGGDSAMEE+ FLT+FASKVTL+HRR  FRASK+MLER ++HPKIE++  R VK+ +     L+GA LEDPR     GS  E  + C+GAF++IGHKP+T FL               IE D+ G+I+HKDHTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAIDCE+WL  NV
Sbjct:  106 AHALIICTGAEAIWLGVEGEEEQKGRGISTCATCDGAFFRDEEIIVIGGGDSAMEEATFLTRFASKVTLIHRRDVFRASKVMLERAENHPKIEIRTFRQVKKWLSDEKGLSGAILEDPRD----GSTEE--IACTGAFIAIGHKPITGFLEG------------QIETDDSGYIIHKDHTMTSVSGVFAAGDVVDTRYRQAITAAGMGCQAAIDCEKWLEENV 310          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A2E0PQV3_9EURY (Thioredoxin-disulfide reductase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0PQV3_9EURY)

HSP 1 Score: 260 bits (665), Expect = 7.680e-84
Identity = 138/219 (63.01%), Postives = 166/219 (75.80%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            ++SLII TGAEAIWLGA+GEDE KG+G+STCATCDGAF++ +E IV GGGDSAMEE+ FLT+FASKVT++HRR  FRASK+M ER  DHPKIE+K +R VK  V     L GA LEDPR       K+E+ + C+GAF++IGHKP+T FL               +E D+ G+IL ++HTMTSVEGVFA GDVVD RYRQAI+AAGMGCQAAID ERWL
Sbjct:  105 AQSLIICTGAEAIWLGADGEDEQKGRGISTCATCDGAFFKDEEIIVVGGGDSAMEEATFLTRFASKVTIIHRRDVFRASKVMYERAADHPKIEIKTHRQVKSWVAGENGLEGAILEDPRD-----GKIEE-ITCTGAFIAIGHKPITAFLEG------------QLETDDSGYILPQEHTMTSVEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A6V8DS78_9ARCH (Thioredoxin-disulfide reductase n=6 Tax=Archaea TaxID=2157 RepID=A0A6V8DS78_9ARCH)

HSP 1 Score: 256 bits (654), Expect = 3.560e-82
Identity = 134/219 (61.19%), Postives = 162/219 (73.97%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            S+S+II TGAE+IWLG EGED  KG+G+STCATCDGAF+  +E IV GGGDSAMEE+ FLT+FASKVT+VHRR  FRASK+M ER  +HPKIE+K +R VK  +     L GA LEDPR          + + CSGAF++IGHKP+TKFL +             +E D+ G+ILHK +TMTS+EGVFA GDVVD RYRQAI+AAGMGCQAAID E+WL
Sbjct:  105 SKSIIICTGAESIWLGVEGEDAQKGRGISTCATCDGAFFRDEEVIVVGGGDSAMEEATFLTRFASKVTIVHRRDVFRASKVMYERAVNHPKIEIKTHRTVKSWLSDDNGLTGAVLEDPRDGS------TETMNCSGAFIAIGHKPITKFLEN------------QVETDDSGYILHKRNTMTSIEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAEKWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A822X8T3_9ARCH (Thioredoxin-disulfide reductase n=17 Tax=Archaea TaxID=2157 RepID=A0A822X8T3_9ARCH)

HSP 1 Score: 254 bits (648), Expect = 2.880e-81
Identity = 134/219 (61.19%), Postives = 165/219 (75.34%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            + ++II TGAEAIWLGAEGE E KG+G+STCATCDGAF+ G E IV GGGDSAMEE+ FLT+FA KVT+VHRR  FRASK+MLER ++HPKIE+K +R VK  +     L GA LED R  +G   ++E    C+GAF++IGH+P+T+FL               +E+D++G+ILH +HTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAID ERWL
Sbjct:  105 AETVIICTGAEAIWLGAEGEQEQKGRGISTCATCDGAFFRGDEVIVVGGGDSAMEEATFLTRFAEKVTIVHRRDVFRASKVMLERAKNHPKIEIKTHRQVKEWLSDDKGLTGAVLEDSR--DGSLEEIE----CAGAFIAIGHRPITEFLGG------------QVEMDKEGYILHSEHTMTSVPGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A7C7ZC26_9ARCH (Thioredoxin-disulfide reductase n=5 Tax=root TaxID=1 RepID=A0A7C7ZC26_9ARCH)

HSP 1 Score: 254 bits (648), Expect = 2.880e-81
Identity = 132/219 (60.27%), Postives = 163/219 (74.43%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            + S+II TGAEAIWLG EGE+  KG+G+STCATCDGAF+  +E IV GGGDSAMEE+ FLT+FASKVT++HRR GFRASK+M ER   HPKI++  +R +KR +     L+GA LEDPR     GS+ E  + C+GAF++IGHKPMT FL               +E+DE G+ILH +HTMTS  GVFA GDVVD+RYRQAI+AAGMGCQAA+D E+WL
Sbjct:  105 TESVIICTGAEAIWLGVEGEEAQKGRGISTCATCDGAFFRDQEVIVVGGGDSAMEEATFLTRFASKVTIIHRREGFRASKVMYERAVSHPKIDIMTHRHIKRWLSDENGLSGAILEDPRD----GSEQE--IACTGAFIAIGHKPMTGFLDG------------EVEMDESGYILHSEHTMTSTPGVFAAGDVVDKRYRQAITAAGMGCQAAMDVEKWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A3A5V6W3_9ARCH (Thioredoxin-disulfide reductase n=12 Tax=Archaea TaxID=2157 RepID=A0A3A5V6W3_9ARCH)

HSP 1 Score: 253 bits (647), Expect = 4.080e-81
Identity = 134/219 (61.19%), Postives = 166/219 (75.80%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            + SLII TGAEAIWLGAEGE+E KG+G+STCATCDGAF+  +E IV GGGDSAMEE++FLT+FASKVT++HRR  F+ASK+M ER  +HPKIE+K  R VK+ +     L GA LEDPR     GS+ E  + CSGAF++IGHKP+T FL               +E D +G+I+HK++TMT+V GVFA GDVVD+RYRQAI+AAGMGCQAAID E+WL
Sbjct:  105 AESLIICTGAEAIWLGAEGEEEQKGRGISTCATCDGAFFRDEEIIVVGGGDSAMEEAIFLTRFASKVTVIHRREVFKASKVMYERAAEHPKIEIKTFRQVKKWIAGDQGLIGAVLEDPRD----GSEEE--ISCSGAFIAIGHKPITSFLDD------------QLETDSEGYIVHKENTMTAVPGVFAAGDVVDKRYRQAITAAGMGCQAAIDAEKWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A367I1M9_9ARCH (Thioredoxin-disulfide reductase n=4 Tax=Archaea TaxID=2157 RepID=A0A367I1M9_9ARCH)

HSP 1 Score: 252 bits (644), Expect = 1.160e-80
Identity = 134/219 (61.19%), Postives = 161/219 (73.52%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            +++LII TGAEAIWLG EGED  KG+G+STCATCDGAF+  +E IV GGGDSAMEE+ FLT+FASKVT+VHRR  FRASK+M +R  +HPKIE+K  R VK+ +     L GA LEDPR     GS  E  + C+GAF++IGH P+T FL               +E+DE G+ILH +HTMTSV GVFA GDVVD RYRQA++AAGMGCQAAID ERWL
Sbjct:  105 AQTLIICTGAEAIWLGVEGEDAQKGRGISTCATCDGAFFRDEEIIVVGGGDSAMEEATFLTRFASKVTIVHRRDVFRASKVMYDRAAEHPKIEIKTFRSVKQWLSDENGLTGALLEDPRD----GSTEE--IACNGAFIAIGHTPITSFLEG------------QVEIDESGYILHHEHTMTSVPGVFAAGDVVDTRYRQAVTAAGMGCQAAIDAERWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A327HTY7_9EURY (Thioredoxin-disulfide reductase n=7 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A327HTY7_9EURY)

HSP 1 Score: 252 bits (643), Expect = 1.650e-80
Identity = 133/220 (60.45%), Postives = 163/220 (74.09%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPR-GDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
            + S+II TGAEAIWLGAEGE+  KG+G+STCATCDGAF+  +E +V GGGDSAMEE+ FLT+FASKVT++HRR  FRASK+M ER + HPKIE++  R VK        L GA LEDPR GDE       + + C+GAF++IGHKP+T++L               +E D++G+ILHK +TMTSVEGVFA GDVVD RYRQAI+AAGMGCQAAID ERWL
Sbjct:  105 AESVIICTGAEAIWLGAEGEEAQKGRGISTCATCDGAFFRDEEVVVVGGGDSAMEEATFLTRFASKVTIIHRRDVFRASKVMYERAEAHPKIEIRPFRQVKSWTSDENGLTGAILEDPRHGDE-------EEISCTGAFIAIGHKPITQYLEG------------QVETDDEGYILHKSNTMTSVEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWL 305          
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A835YK56_9STRA (Thioredoxin-disulfide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK56_9STRA)

HSP 1 Score: 251 bits (640), Expect = 2.060e-80
Identity = 140/233 (60.09%), Postives = 172/233 (73.82%), Query Frame = 1
Query:    1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAI-VGGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKR-------RVQRRGVLAGAALEDPRG----DEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAGN 663
            + S+II+TGAEA WLGA+ E+ VKG GVSTCATCDGAFYEGKE + VGGGDSA+ E+LFLT+FASKVT++HRR GFRAS IMLER + HPKI +  N+VVKR        +Q  G  AGAA+   RG    D   G  +E  LP +GAFL++GHKP+TKFL+              +ELD +G+I+++ HTMTSVEGVFACGDVVD+RYRQAI+AAGMGCQAA+D E+WL G 
Sbjct:   64 ANSVIISTGAEAQWLGAQNEELVKGAGVSTCATCDGAFYEGKEVLMVGGGDSAITEALFLTRFASKVTILHRREGFRASPIMLERTRTHPKIHILTNKVVKRWLVETPPPLQGEGGGAGAAVL--RGAEVTDVVTGEAME--LPAAGAFLAVGHKPVTKFLKG-----------SGVELDGEGYIVNRKHTMTSVEGVFACGDVVDKRYRQAITAAGMGCQAAMDAEKWLEGE 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE0_ECTSI2.600e-10571.37Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A367I9L2_9ARCH1.760e-8562.78Thioredoxin-disulfide reductase n=13 Tax=Archaea T... [more]
A0A2E0PQV3_9EURY7.680e-8463.01Thioredoxin-disulfide reductase n=1 Tax=Euryarchae... [more]
A0A6V8DS78_9ARCH3.560e-8261.19Thioredoxin-disulfide reductase n=6 Tax=Archaea Ta... [more]
A0A822X8T3_9ARCH2.880e-8161.19Thioredoxin-disulfide reductase n=17 Tax=Archaea T... [more]
A0A7C7ZC26_9ARCH2.880e-8160.27Thioredoxin-disulfide reductase n=5 Tax=root TaxID... [more]
A0A3A5V6W3_9ARCH4.080e-8161.19Thioredoxin-disulfide reductase n=12 Tax=Archaea T... [more]
A0A367I1M9_9ARCH1.160e-8061.19Thioredoxin-disulfide reductase n=4 Tax=Archaea Ta... [more]
A0A327HTY7_9EURY1.650e-8060.45Thioredoxin-disulfide reductase n=7 Tax=Euryarchae... [more]
A0A835YK56_9STRA2.060e-8060.09Thioredoxin-disulfide reductase n=1 Tax=Tribonema ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6175contigH-elongata_contig6175:78..1820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue6.4e-85
Seed eggNOG ortholog2880.D8LKE0
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00384
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
EggNOG free text desc.thioredoxin-disulfide reductase activity
EggNOG OGsCOG0492@1,KOG0404@2759
EC1.8.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size672
Cds size672
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6175.13732.1prot_H-elongata_contig6175.13732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6175 78..1820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.1282158-CDS-H-elongata_contig6175:77..2101622930996.1282158-CDS-H-elongata_contig6175:77..210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 78..210 +
1691679655.0893817-CDS-H-elongata_contig6175:77..2101691679655.0893817-CDS-H-elongata_contig6175:77..210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 78..210 +
1622930996.1399784-CDS-H-elongata_contig6175:429..4911622930996.1399784-CDS-H-elongata_contig6175:429..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 430..491 +
1691679655.1016378-CDS-H-elongata_contig6175:429..4911691679655.1016378-CDS-H-elongata_contig6175:429..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 430..491 +
1622930996.1538038-CDS-H-elongata_contig6175:1081..12021622930996.1538038-CDS-H-elongata_contig6175:1081..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 1082..1202 +
1691679655.1107538-CDS-H-elongata_contig6175:1081..12021691679655.1107538-CDS-H-elongata_contig6175:1081..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 1082..1202 +
1622930996.1706216-CDS-H-elongata_contig6175:1464..18201622930996.1706216-CDS-H-elongata_contig6175:1464..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 1465..1820 +
1691679655.121902-CDS-H-elongata_contig6175:1464..18201691679655.121902-CDS-H-elongata_contig6175:1464..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6175 1465..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6175.13732.1

>prot_H-elongata_contig6175.13732.1 ID=prot_H-elongata_contig6175.13732.1|Name=mRNA_H-elongata_contig6175.13732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIVGGGD
SAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVK
RRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLR
SLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQA
ISAAGMGCQAAIDCERWLAGNVQ*
back to top

mRNA from alignment at H-elongata_contig6175:78..1820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6175.13732.1 ID=mRNA_H-elongata_contig6175.13732.1|Name=mRNA_H-elongata_contig6175.13732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1743bp|location=Sequence derived from alignment at H-elongata_contig6175:78..1820+ (Himanthalia elongata Himel1 dioecious)
TCTAGATCTCTCATCATCGCGACGGGGGCAGAAGCGATATGGCTTGGGGC GGAAGGCGAGGATGAAGTAAAAGGCAAGGGTGTAAGCACCTGCGCCACGT GCGACGGGGCGTTCTACGAAGGGAAAGAGGCGAGTTTTCGAGAGAAAAGC GCCTCCCCGCCAAAGGGTCGTGCAGTGGAGGGCCCGGGGGCCGTAGCATT CGAGATGCATGGACCAGGCGGGGCTGACTGTCCGACAGTTTCACGGTGGG CGATGAGAATGTGTCTCAGCCGTCGGCGGCGAGAGAAGACCTGTCTGTGA TACGCTCCGCTCTACTCAGATCCCCCAATGTCGTATGCCGAGCAGGTAAT AGTAGTGGGAGGGGGTGACAGCGCGATGGAAGAATCTCTTTTCCTGACCA AGTTCGCTTCGAAGGTACGAGAAACCCCATCTTCCTTGTCGGAAGTGAAT CGCGTACATTATTCGAAGTAAGATGTTCTTGACGTACCGCAACTGCTTTA ATATTCATTGTGATTGTACGAGGTTGGCGTTTAGAGTAGATCGGACGCAG AACACAAGCATCAGTGCCCTGACAAGGGTGGGTGGGTGCGCGCGCCAGCG AGTGTGCGGCGGGAGCGTAAATGTCTTGTACGAGGGAGATACCTGATCTT CTCTCGTTGAAGTAAATAATCCCCTGCGCTCTGCGCGTCAGATGTCTGCC TGGTCAAATCTCTTCGCGTGACTCGGGACACGCGCACCCGTCGCGTTGCT TCGACCGCCGGACAAGCAGAGATACGATGAATCAGCTTCGATTGTGGTGC TGATCCGAGCAATCGCGAAATTGTACGCACATGCACACACAAACACCAAG TATGATTGATCCCTCATTGGCAGGACCATTGCGAGTATGCTAAAATGACA CGGCCGGATTGCGCGGTTTGATGTGCAATTTAGTAGTAAATACACAAGAA ACATACACACACAAAGCGCCACTTCAGCGAGGCCTCTTCTTGCTCCTCTG TTAGGTGACACTCGTCCATCGGCGAACGGGATTTAGGGCCAGCAAGATCA TGTTGGAGCGGGTGCAGGATCATCCCAAGATTGAGATGAAGCTGAACCGG GTAGTCAAGAGGCGAGTCCAACGGAGTTAGGGGAGGTAGGGGGGGTATTC CCACGCAGTGATAAAAAACTTCTTCAGCTCGTGGTCTGACTTCCATGTCA ATCGCTGTGCTGCGCGCTGTTCGATGTTATGTCGCTCCTCCATGGATCTT TCTCCACTCAACTTTGCTTTGCTTCCTTAAGATTTATCAGATCATAATCC TCTACTCCGTCTTCAATTCTCATATATGTTGTCACGTGGCGCCGTGTTTA ACTCCGACAAAAATGCGCGTTAGGTGGGTTGTCGAAGGAGGCGTTCTCGC TGGGGCTGCTTTGGAGGATCCCCGCGGGGACGAGGGGTGCGGATCAAAGG TAGAAGACTTTTTGCCGTGCAGCGGAGCGTTTCTGTCGATCGGACACAAG CCGATGACAAAGTTCTTGCGTTCTTTGGATGCCGCCGGCACTAATAGGGA TGAAGCGATGGCGATAGAGCTAGACGAGGACGGTTTCATCCTGCACAAAG ATCACACCATGACAAGTGTGGAGGGTGTGTTTGCGTGCGGGGACGTGGTG GACCGTCGATATCGTCAGGCAATAAGCGCGGCAGGTATGGGGTGCCAGGC TGCGATTGATTGTGAGAGATGGCTCGCGGGAAATGTTCAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6175:78..1820+

>mRNA_H-elongata_contig6175.13732.1 ID=mRNA_H-elongata_contig6175.13732.1|Name=mRNA_H-elongata_contig6175.13732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig6175:78..1820+ (Himanthalia elongata Himel1 dioecious)
TCTAGATCTCTCATCATCGCGACGGGGGCAGAAGCGATATGGCTTGGGGC
GGAAGGCGAGGATGAAGTAAAAGGCAAGGGTGTAAGCACCTGCGCCACGT
GCGACGGGGCGTTCTACGAAGGGAAAGAGGCGATCTAGATCTCTCATCAT
CGCGACGGGGGCAGAAGCGATATGGCTTGGGGCGGAAGGCGAGGATGAAG
TAAAAGGCAAGGGTGTAAGCACCTGCGCCACGTGCGACGGGGCGTTCTAC
GAAGGGAAAGAGGCGATAGTGGGAGGGGGTGACAGCGCGATGGAAGAATC
TCTTTTCCTGACCAAGTTCGCTTCGAAGTAGTGGGAGGGGGTGACAGCGC
GATGGAAGAATCTCTTTTCCTGACCAAGTTCGCTTCGAAGGTGACACTCG
TCCATCGGCGAACGGGATTTAGGGCCAGCAAGATCATGTTGGAGCGGGTG
CAGGATCATCCCAAGATTGAGATGAAGCTGAACCGGGTAGTCAAGAGGCG
AGTCCAACGGAGTGACACTCGTCCATCGGCGAACGGGATTTAGGGCCAGC
AAGATCATGTTGGAGCGGGTGCAGGATCATCCCAAGATTGAGATGAAGCT
GAACCGGGTAGTCAAGAGGCGAGTCCAACGGAGAGGCGTTCTCGCTGGGG
CTGCTTTGGAGGATCCCCGCGGGGACGAGGGGTGCGGATCAAAGGTAGAA
GACTTTTTGCCGTGCAGCGGAGCGTTTCTGTCGATCGGACACAAGCCGAT
GACAAAGTTCTTGCGTTCTTTGGATGCCGCCGGCACTAATAGGGATGAAG
CGATGGCGATAGAGCTAGACGAGGACGGTTTCATCCTGCACAAAGATCAC
ACCATGACAAGTGTGGAGGGTGTGTTTGCGTGCGGGGACGTGGTGGACCG
TCGATATCGTCAGGCAATAAGCGCGGCAGGTATGGGGTGCCAGGCTGCGA
TTGATTGTGAGAGATGGCTCGCGGGAAATGTTCAGTAAGAGGCGTTCTCG
CTGGGGCTGCTTTGGAGGATCCCCGCGGGGACGAGGGGTGCGGATCAAAG
GTAGAAGACTTTTTGCCGTGCAGCGGAGCGTTTCTGTCGATCGGACACAA
GCCGATGACAAAGTTCTTGCGTTCTTTGGATGCCGCCGGCACTAATAGGG
ATGAAGCGATGGCGATAGAGCTAGACGAGGACGGTTTCATCCTGCACAAA
GATCACACCATGACAAGTGTGGAGGGTGTGTTTGCGTGCGGGGACGTGGT
GGACCGTCGATATCGTCAGGCAATAAGCGCGGCAGGTATGGGGTGCCAGG
CTGCGATTGATTGTGAGAGATGGCTCGCGGGAAATGTTCAGTAA
back to top