mRNA_H-elongata_contig61749.13731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61749.13731.1
Unique NamemRNA_H-elongata_contig61749.13731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61749.13731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61749contigH-elongata_contig61749:2..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size733
Cds size477
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.9618576-UTR-H-elongata_contig61749:1..981622930995.9618576-UTR-H-elongata_contig61749:1..98Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 2..98 -
1691679655.0110023-UTR-H-elongata_contig61749:1..981691679655.0110023-UTR-H-elongata_contig61749:1..98Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 2..98 -
1622930995.981289-UTR-H-elongata_contig61749:144..2241622930995.981289-UTR-H-elongata_contig61749:144..224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 145..224 -
1691679655.0190837-UTR-H-elongata_contig61749:144..2241691679655.0190837-UTR-H-elongata_contig61749:144..224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 145..224 -
1622930995.9977512-UTR-H-elongata_contig61749:1110..11491622930995.9977512-UTR-H-elongata_contig61749:1110..1149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 1111..1149 -
1691679655.0275133-UTR-H-elongata_contig61749:1110..11491691679655.0275133-UTR-H-elongata_contig61749:1110..1149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 1111..1149 -
1622930996.0707922-UTR-H-elongata_contig61749:3275..33151622930996.0707922-UTR-H-elongata_contig61749:3275..3315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 3276..3315 -
1691679655.0771742-UTR-H-elongata_contig61749:3275..33151691679655.0771742-UTR-H-elongata_contig61749:3275..3315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61749 3276..3315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.0113666-CDS-H-elongata_contig61749:1149..13351622930996.0113666-CDS-H-elongata_contig61749:1149..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61749 1150..1335 -
1691679655.0363076-CDS-H-elongata_contig61749:1149..13351691679655.0363076-CDS-H-elongata_contig61749:1149..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61749 1150..1335 -
1622930996.031353-CDS-H-elongata_contig61749:1350..16251622930996.031353-CDS-H-elongata_contig61749:1350..1625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61749 1351..1625 -
1691679655.0454528-CDS-H-elongata_contig61749:1350..16251691679655.0454528-CDS-H-elongata_contig61749:1350..1625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61749 1351..1625 -
1622930996.0502732-CDS-H-elongata_contig61749:3259..32751622930996.0502732-CDS-H-elongata_contig61749:3259..3275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61749 3260..3275 -
1691679655.06353-CDS-H-elongata_contig61749:3259..32751691679655.06353-CDS-H-elongata_contig61749:3259..3275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61749 3260..3275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61749.13731.1prot_H-elongata_contig61749.13731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61749 1150..3275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61749.13731.1

>prot_H-elongata_contig61749.13731.1 ID=prot_H-elongata_contig61749.13731.1|Name=mRNA_H-elongata_contig61749.13731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MVAPDAPERSRPPRDTANERSSSAKGMPPLHTWTANADAEYRQLLRQADR
ERLRHDGSLRSRAENKEALTASQWVQEDATTVLPSSRAHICFATTPPVLP
RIFHALFSSKVDTPFPSPRLFAGTTLDELDFRSQATTRTLDTTASARSPP
AGEDGQST*
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mRNA from alignment at H-elongata_contig61749:2..3315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61749.13731.1 ID=mRNA_H-elongata_contig61749.13731.1|Name=mRNA_H-elongata_contig61749.13731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3314bp|location=Sequence derived from alignment at H-elongata_contig61749:2..3315- (Himanthalia elongata Himel1 dioecious)
CATTAGGGGAGTACTCAGGACGGTCTCTCCCGGCGGAAGCATGGTGGCTC
CCGATGGTAAGGATGCTACCAAGGTACTCAGACAAGTCCTTAGTGAGGTT
TTGGCTGGCTGTGGTATCCTGCGGGGTGAGAATGAGTGAACACCTATTAT
TCATTTCGACCATCGGTGTTTGAACGCTAGAGGCTGGCAGCCAAGATACG
TCACATCTGGACTACATCCTCACAGAGACTCTCGCCCGATAATGGGTGGC
TTAGATTCACCGCCGTGTGATTTGAAGCGGATTGCATGTCGGCGGAATAC
GGTCGGCGGTCTGATGTAAAACTTGTTTTCTTGCGTTCAAAACGACAAAT
GACTGGTTTTCTCTTCATTTCTCAACGAGGGATACGCATCAACCCGAGGC
ACATCAAGCTGCAAGCGACTGACAATCACACCCACCGCAACCTATAACAA
CATGCGAGATTCACAAATGTCGCCACTCTGATATATACGCAGGCAACTAC
GCAGAGAGTGAGGGCGTTTATACACCACAGCAGCAGTAGAAATCGATTTG
TGTGTGTGTGGGTCTCGAGAGAAGAGTACGCGCCATCTATTATCCCGATT
CATAACACCACAGGGGTCCCGTCATTCTGTTTGGGTTCAAAACCTCAGGC
GCAAACGCACATGCATACTATAGTTAGCGGTAGTCTAGGAGGTTCGTATA
AAACAATAATTATTCGTCGCGGACATGGCTTGAGGGAGAAACGCCTAATG
CCGCAAACGTAGAAATGTGCTTATTATTTGATTATTGGTCCACTTTTGTA
TGTATTATTCTTTCGGTACTTTGTCTGATTGAGCAAAAAAAAGTGTACTA
CTTTTTCTGAAAGCTTTTTGCCAGTGGATCTGCCCGCTGCTGCTTTTTTA
AAATTAAAGATTTATTTTTGTACGAAACACTGGACAATACACATACCCGG
TACAAATGTACAAATTATTAGTCGAAAGGAGTTCGATGGTCTGAATACTA
CACGAACCGGCACATACATACGCCTCAGAATATCTCCACAAGGCCTCCGT
TTTTTGCATTCCATGGTGGCCTTAACCATCCTTGTAGGTCCAAATGAGCT
CTACACACGCTTGTCTGTATCCCCACAGATAAAACTTACACGACCCCTTT
AACTGATTCGTTTTCATCCATTCTTGCCGATGTCGAGACATTGCCTTCGC
CTCTCGTTAGCACCAGTGCTGCTGATTCTAAATCGATAGAGTAAGAACGC
CCCTGATGGATAGGGCTCTACGCCACGCTCATCGTGATGTGATTCGCGCC
GAAAAGTAAAGCACTGAAAATAATAAATTCATGAGAAATTCATCCCCGAA
GGTCGACCGTTCAAATGACTTCTCTTTCAAACGGATTTTTACTCCTGTTT
TACAGCCCCCCCCCACACTGTATCGGATACACGCTGCCGCGCGAACAGAA
ACGTGAACTGTTCGGTACATCCCGCGTTCCTTTCCCCCCTGGCTGCCCGC
GCCCTTTTCACAATTTCCCCTTATCCTTTTTTCGACTTGGAGTTGCCGGA
AGAATGTCTTCTTCCAATAGTCCTCGCCCGGACTCAACCACCCCCGAGAA
CGAACCTCTGCTCGATTGCCTCGCTCCATATTAGAATGTATTCAACGAGA
AAACGTGTAGCACCCTCTTCTCCACGGCCTTCCTCGCTAGCGCCAGAGAG
GTCAAGACCGCCAAGAGACACGGCAAACGAGAGGAGCTCGTCCGCCAAAG
GAATGCCGCCCCTTCACACCTGGACCGCTAACGCCGACGCGGAATACCGT
CAACTTCTCCGCCAGGCCGACCGGGAACGACTGCGCCACGACGGTTCCCT
GCGATCCCGCGCGGAGAATAAGGAGGCACTAACGGCATCTCAGTGGGTGC
AAGAAGACGCCACCACCGTCTTGCCGAGCTCACGAGCACATATTTGCTTC
GCTACAACACCTCCGGCTACTATAACGCAGGTTCTACCTCGCATTTTTCA
CGCACTGTTCAGTAGTAAGGTCGACACGCCTTTCCCCTCCCCCAGATTGT
TCGCAGGCACAACTCTCGACGAACTAGATTTTCGGTCACAAGCGACGACT
CGGACTCTGGACACCACCGCCAGCGCGAGGAGCCCTCCAGCAGGAGAGGA
CGGTCAAAGCACTTGACCGTTTCCAATGATTCGGGCCAGGACCGCCCTTC
ATCAGGTCGGAACGAAGCGAGCCGACAGGTTCTACACCGTATTTTCTATG
CTCCGCTCAGTAATGGCATTGATGCGCCTCCCTTCCCCCCCCGATTGCTC
GGAGGCGCGAACCACGACAGGCTAGATTTTTTGTAGCATGCGATGGCTCG
GATGATTACACTCCCGCCGCCGCACACATTCCAGCACCTGTCAAGGCTGC
TACCCCTACCCAGGTCTCGCCTCCCCCCGTTGTAAAGACGCCTAACCCCA
TACACCTCACGTTAGAGATGATCACCCTCACGACTATCACAGCTGTAGAC
GGCTACCTCACTAACTTGGGCATTGTACCGCGGAGCGAAATCGCACCGCG
CCACCTCGATGCTGCCCCGGATAGGACGGTACCCTTTGGTATGACACCGA
CCCCGATCCCCGAAAATAATTTCTCCCCTAATTTTGCCTCCCTCCCCCTC
AGCAGCGCACGGTTCCCACCGTAGATCCTGCCCCGACGTCGGGCTCCGCC
TCCGCCTTTAATGCTGCCGCGCCCGCTGACCCTGCCGACCCTACCGACTC
ACATTTCTTTAATATGCCCCGTCCCATGCATCGAGTAGTTCGCAACCGCT
CGGTCCCCGCGGGGACTTCGTTGAAAAATGCAATCCGAGTACCGCACGCT
TGACATGCGCCGCGTTCCACGAATACAATCGCTACAATTCCCCCTGTCCG
CGGATCGAACAGCAGCAACACAACTTCTTTTAGACTTCATGCGCGACCCC
TCTGGCACGGTTAAAATGGATTCCGTGGTTTGGGTGCCAGGCTGGCACGT
GCCCCTCCTGAAACTAACGAAGGCTGCAATACACCCGAACCGCGATGATT
CTCACGATCTGCACCGCCTCCTCGACAATCTATTCGCGCAGACACATGCC
AGGGTAACATCGGGATCAAATGGACTCACGGCGTTCAGGACCCTACTAAC
GGATATCGCCGACCATTTTGATCGCGCGCTATGCGGCGCAGCGTTAGAAA
CGCTGCAGAAATTCGGTGTACCAACGGGGACACCGTTTACCATTTTCTTC
ATATGTTGAGATTGGTATTTATCTTAGCATCCTTCTCTGACTCATTGGGT
TATAGCAGTTACAA
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Coding sequence (CDS) from alignment at H-elongata_contig61749:2..3315-

>mRNA_H-elongata_contig61749.13731.1 ID=mRNA_H-elongata_contig61749.13731.1|Name=mRNA_H-elongata_contig61749.13731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig61749:2..3315- (Himanthalia elongata Himel1 dioecious)
ATGGTGGCTCCCGATGATGGTGGCTCCCGATGCGCCAGAGAGGTCAAGAC
CGCCAAGAGACACGGCAAACGAGAGGAGCTCGTCCGCCAAAGGAATGCCG
CCCCTTCACACCTGGACCGCTAACGCCGACGCGGAATACCGTCAACTTCT
CCGCCAGGCCGACCGGGAACGACTGCGCCACGACGGTTCCCTGCGATCCC
GCGCGGAGAATAAGGAGGCACTAACGGCATCTCAGTGGGTGCAAGAAGAC
GCCACCACCGTCTTGCCGAGCTCACGAGCACATATTTGCTTCGCTACAAC
ACCTCCGCGCCAGAGAGGTCAAGACCGCCAAGAGACACGGCAAACGAGAG
GAGCTCGTCCGCCAAAGGAATGCCGCCCCTTCACACCTGGACCGCTAACG
CCGACGCGGAATACCGTCAACTTCTCCGCCAGGCCGACCGGGAACGACTG
CGCCACGACGGTTCCCTGCGATCCCGCGCGGAGAATAAGGAGGCACTAAC
GGCATCTCAGTGGGTGCAAGAAGACGCCACCACCGTCTTGCCGAGCTCAC
GAGCACATATTTGCTTCGCTACAACACCTCCGGTTCTACCTCGCATTTTT
CACGCACTGTTCAGTAGTAAGGTCGACACGCCTTTCCCCTCCCCCAGATT
GTTCGCAGGCACAACTCTCGACGAACTAGATTTTCGGTCACAAGCGACGA
CTCGGACTCTGGACACCACCGCCAGCGCGAGGAGCCCTCCAGCAGGAGAG
GACGGTCAAAGCACTTGAGTTCTACCTCGCATTTTTCACGCACTGTTCAG
TAGTAAGGTCGACACGCCTTTCCCCTCCCCCAGATTGTTCGCAGGCACAA
CTCTCGACGAACTAGATTTTCGGTCACAAGCGACGACTCGGACTCTGGAC
ACCACCGCCAGCGCGAGGAGCCCTCCAGCAGGAGAGGACGGTCAAAGCAC
TTGA
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