mRNA_H-elongata_contig61735.13730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61735.13730.1
Unique NamemRNA_H-elongata_contig61735.13730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.440e-37
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    4 QVRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            +V +EGTI++ NARHPVLLLRGK PVGN M+LDA+MQAL+LTGPNAGGKTVVLKTLGLVALMA AGIPIPAAPGARVDLFDPV
Sbjct:  343 KVMNEGTIKLVNARHPVLLLRGKAPVGNSMSLDASMQALILTGPNAGGKTVVLKTLGLVALMARAGIPIPAAPGARVDLFDPV 425          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.330e-37
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1
Query:    4 QVRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            +V +EGTI++ NARHPVLLLRGK PVGNDM+LDA+MQAL+LTGPNAGGKTVVLKTLGLVALMA AGIPIPAA GARVDLFDPV
Sbjct:  441 KVMNEGTIKLVNARHPVLLLRGKAPVGNDMSLDASMQALILTGPNAGGKTVVLKTLGLVALMARAGIPIPAAQGARVDLFDPV 523          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.520e-30
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 QVRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            +V  EG I +   RHPVL LRGK PV ND+ LDA  QALVLTGPNAGGKTVVLKTLGLVALMA AGIP+PAA GARVD+FDPV
Sbjct:  353 EVGSEGAIRLRAVRHPVLALRGKDPVPNDLELDAASQALVLTGPNAGGKTVVLKTLGLVALMARAGIPVPAARGARVDVFDPV 435          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A4P5W0T4_9DELT (Endonuclease MutS2 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5W0T4_9DELT)

HSP 1 Score: 103 bits (258), Expect = 4.580e-24
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   19 GTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            G I +  ARHP+L LRG   VGND+ALD+  + LVLTGPNAGGKTV LKT+GL AL+  A IPIPA  G+RVD+FDP+
Sbjct:  296 GVIRVKKARHPLLALRGVPVVGNDLALDSAQRCLVLTGPNAGGKTVALKTIGLCALLTRAAIPIPAGEGSRVDIFDPI 373          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A0G4ECS6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECS6_VITBC)

HSP 1 Score: 100 bits (250), Expect = 5.520e-23
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    7 VRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            V  EG I I  +RHPVL LRG +P  ND++L  +  ALVLTGPNAGGKTVVLKTLGL AL    G+P+PA  GARVD F+P+
Sbjct:  369 VGTEGKIHIDQSRHPVLALRGVEPTANDISLGFDYDALVLTGPNAGGKTVVLKTLGLFALFVRYGLPVPAMDGARVDWFNPI 450          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A4D9D3J8_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.560e-23
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 QVRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            +V  +G I   +ARHPVLLLR + P+GN + +D     LVLTGPNAGGKT+VLKTLGL+AL+   GIP+PA  G RVD F P+
Sbjct:  400 EVGTDGCISAEDARHPVLLLRNRNPIGNTLHIDPAKPGLVLTGPNAGGKTIVLKTLGLLALLVRLGIPVPARRGVRVDFFSPI 482          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A3M1CK51_9DELT (Endonuclease MutS2 (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1CK51_9DELT)

HSP 1 Score: 99.0 bits (245), Expect = 2.520e-22
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    7 VRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            V D+G + +  ARHPVL+LRG   V +D+ LD   + LVL+GPN GGKT+ LKTLGL ALM  AGIP+P A G+RVD F PV
Sbjct:  298 VGDDGVVSLRAARHPVLVLRGIDVVPHDLGLDDRRRGLVLSGPNTGGKTIALKTLGLAALMVRAGIPVPCAEGSRVDFFSPV 379          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A7S3L824_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L824_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.560e-22
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    7 VRDEGTIEIANARHPVLLLRG-KQPVGNDMALDAN-MQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGA-----RVDLFDPV 252
            V++EG +++ NA+HP+LLLRG    VG+D+ L A+  Q LVLTGPN+GGKT++LK LGLVALMA AGIP+PAA G      RVD F+P+
Sbjct:  393 VQEEGVVDLRNAKHPILLLRGISNVVGSDVQLGADGNQGLVLTGPNSGGKTIILKLLGLVALMARAGIPVPAASGTDDYKPRVDFFNPI 481          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A0G4HI44_9ALVE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HI44_9ALVE)

HSP 1 Score: 97.1 bits (240), Expect = 1.210e-21
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 VRDEGTIEIANARHPVLLLRGKQPVGNDMALDAN-MQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            V+D G I++ +ARHPVL LR  +PV ND  +    ++ LV+TGPNAGGKTVV+KTLGL  LM   GIPIP +PGAR D F PV
Sbjct:   82 VKDRGVIDVKSARHPVLELRRVRPVANDACVGRKGVRGLVITGPNAGGKTVVMKTLGLFGLMVSMGIPIPCSPGARFDFFTPV 164          
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Match: A0A812Y5I8_9DINO (MutS2 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Y5I8_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 8.000e-21
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 VRDEGTIEIANARHPVLLLRG-KQPVGNDMALDANMQALVLTGPNAGGKTVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV 252
            V D+G IE+  AR+P L+LRG K+ VG  + L  + Q L+LTGPNAGGKTVVLKTLGL+AL+A  GIP+PA    RVD F+ V
Sbjct:   97 VGDDGIIEVKQARNPCLILRGGKRVVGYRLELGKSSQGLLLTGPNAGGKTVVLKTLGLLALLARCGIPVPAGESPRVDFFEVV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61735.13730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP1_ECTSI1.440e-3785.54MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE2.330e-3785.54DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YZI9_9STRA1.520e-3075.90Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A4P5W0T4_9DELT4.580e-2464.10Endonuclease MutS2 n=1 Tax=Deltaproteobacteria bac... [more]
A0A0G4ECS6_VITBC5.520e-2362.20Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9D3J8_9STRA5.560e-2357.83Smr domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A3M1CK51_9DELT2.520e-2258.54Endonuclease MutS2 (Fragment) n=1 Tax=Deltaproteob... [more]
A0A7S3L824_9STRA7.560e-2258.43Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A0G4HI44_9ALVE1.210e-2159.04DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A812Y5I8_9DINO8.000e-2159.04MutS2 protein (Fragment) n=1 Tax=Symbiodinium necr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61735contigH-elongata_contig61735:2533..3560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.8860621-CDS-H-elongata_contig61735:2532..26741622930995.8860621-CDS-H-elongata_contig61735:2532..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61735 2533..2674 +
1691679654.984701-CDS-H-elongata_contig61735:2532..26741691679654.984701-CDS-H-elongata_contig61735:2532..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61735 2533..2674 +
1622930995.9044032-CDS-H-elongata_contig61735:3450..35601622930995.9044032-CDS-H-elongata_contig61735:3450..3560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61735 3451..3560 +
1691679654.9989183-CDS-H-elongata_contig61735:3450..35601691679654.9989183-CDS-H-elongata_contig61735:3450..3560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61735 3451..3560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61735.13730.1prot_H-elongata_contig61735.13730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61735 2533..3560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61735.13730.1

>prot_H-elongata_contig61735.13730.1 ID=prot_H-elongata_contig61735.13730.1|Name=mRNA_H-elongata_contig61735.13730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VQVRDEGTIEIANARHPVLLLRGKQPVGNDMALDANMQALVLTGPNAGGK
TVVLKTLGLVALMAMAGIPIPAAPGARVDLFDPV
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mRNA from alignment at H-elongata_contig61735:2533..3560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61735.13730.1 ID=mRNA_H-elongata_contig61735.13730.1|Name=mRNA_H-elongata_contig61735.13730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-elongata_contig61735:2533..3560+ (Himanthalia elongata Himel1 dioecious)
GTACAGGTTCGCGACGAGGGCACGATTGAAATCGCTAACGCGCGGCATCC GGTGCTGCTGCTGCGCGGTAAGCAGCCCGTCGGCAATGACATGGCGCTGG ATGCCAACATGCAAGCGCTCGTACTCACGGGACCCAACGCCGGTATGTTA TGTCTGGATTGATAGGTGTAGTATATGACTGAGTCGACGGAGGGACCGCG TTTGATTGCCACTTTTCTCTGGGCGTATGTAGGTATGTATGTATGTGTGT GTGCGTTTGATGGGTTTTCCATAATGATTGTTGGCGTTTTCTGTCGTCGC CTTGGGACAAGGTTATTGACTCTGTCTGAGGCGGCCTTTTTGTTGTGAGG GTCAGGGTCAGTCAGACCCTTTCTCTCATATATAATACATCCATCTATCG ATGGGGTTTTTTGTTTTTTTGTCGACTATTCGTCTAGTAAACATCGATAA ACATATATACCCTAGGGTATTCAGTATTTCAGTAGGTTAGGTTAGTTTAG GAACTGCTTGCAGGAGCACTGGATGTCGGATGCTCTCCTTTCCCTTGTCA CACAGCTTTATTTTTGCGTATTTTTGCGTATCATTCGCTTTGTCAGCTAG TAGTGTAGTATAGTATATAGTATACTGTATTATAGTATAGTATACTCCGC CCCTCCCACCCCCGTATTTTTTGTGAATGACGATTTGACGCAATATCTGG CAATATTGTAAATTTTCCAAAACTTAAAACTTCGTTCTAACCTTTTTATT TCAATTTTACAAAAAACGAATTGCGATTTGCAATATTAATTATTCTAAAC TTGGGAGTTATCGTGGCAAGATGCGAATCGCGATGATTTGGCCAGATGAT TCACGTACTATTGTAAACGTCTGGCTGATTTTTGAACAAACAAAAAACAA AACAAAAATAACACACAGGCGGCAAGACCGTAGTGCTCAAGACGCTCGGA CTCGTAGCTCTTATGGCCATGGCGGGGATACCGATCCCCGCGGCCCCGGG TGCTAGGGTGGACCTTTTCGACCCGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig61735:2533..3560+

>mRNA_H-elongata_contig61735.13730.1 ID=mRNA_H-elongata_contig61735.13730.1|Name=mRNA_H-elongata_contig61735.13730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig61735:2533..3560+ (Himanthalia elongata Himel1 dioecious)
GTACAGGTTCGCGACGAGGGCACGATTGAAATCGCTAACGCGCGGCATCC
GGTGCTGCTGCTGCGCGGTAAGCAGCCCGTCGGCAATGACATGGCGCTGG
ATGCCAACATGCAAGCGCTCGTACTCACGGGACCCAACGCCGGTACAGGT
TCGCGACGAGGGCACGATTGAAATCGCTAACGCGCGGCATCCGGTGCTGC
TGCTGCGCGGTAAGCAGCCCGTCGGCAATGACATGGCGCTGGATGCCAAC
ATGCAAGCGCTCGTACTCACGGGACCCAACGCCGGCGGCAAGACCGTAGT
GCTCAAGACGCTCGGACTCGTAGCTCTTATGGCCATGGCGGGGATACCGA
TCCCCGCGGCCCCGGGTGCTAGGGTGGACCTTTTCGACCCGGTAGCGGCA
AGACCGTAGTGCTCAAGACGCTCGGACTCGTAGCTCTTATGGCCATGGCG
GGGATACCGATCCCCGCGGCCCCGGGTGCTAGGGTGGACCTTTTCGACCC
GGTA
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