mRNA_H-elongata_contig61730.13729.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61730.13729.1
Unique NamemRNA_H-elongata_contig61730.13729.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: D7FI95_ECTSI (Protein kinase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI95_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.210e-18
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:  109 MKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLVM 258
            MKTVPLG GKNS AM QLRSE+DLIR LDHPNIVRLQEVFETEDSLFLVM
Sbjct:    1 MKTVPLGAGKNSLAMGQLRSELDLIRRLDHPNIVRLQEVFETEDSLFLVM 50
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7R9VKN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VKN8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.050e-16
Identity = 35/71 (49.30%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   43 LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            LG G++GVV+ VK+K TGV YA K++ +G  K+++++ +LR+E+ ++  +DHPNIVRL+EV+++E  LFLV
Sbjct:   16 LGSGVEGVVRLVKHKTTGVEYASKSIDIGLIKDAESLQKLRNEISIMCQVDHPNIVRLEEVYQSESELFLV 86
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7S3PXR4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXR4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.050e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   19 DFYD--LEGP-LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            D YD   +GP LG G+ GVV+K+ +K+T + YA+K +PL H K    + QLR E+ ++  LDHPNIV+L+ V+E++DS+FLV
Sbjct:  114 DVYDGIHDGPILGYGISGVVRKIVHKETLLEYAVKAMPLSHMKTEDGLRQLREELTILLELDHPNIVKLEAVYESKDSIFLV 195
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7S1FVZ1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVZ1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.920e-14
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   43 LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            LG G+ G+V+KV ++ T VNYA+KT+ L +  N  ++ QLR E+ ++  LDHPN+VRL+EV+E+   ++LV
Sbjct:   61 LGSGIAGIVRKVTHRITSVNYAVKTIELSNVDNESSLQQLREEIYIMCQLDHPNVVRLEEVYESHQQIYLV 131
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7S1FWM3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWM3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.930e-14
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   43 LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            LG G+ G+V+KV ++ T VNYA+KT+ L +  N  ++ QLR E+ ++  LDHPN+VRL+EV+E+   ++LV
Sbjct:  205 LGSGIAGIVRKVTHRITSVNYAVKTIELSNVDNESSLQQLREEIYIMCQLDHPNVVRLEEVYESHQQIYLV 275
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A1E7FG13_9STRA (Pkinase-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FG13_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.530e-14
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   43 LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            LG G+ G+V+KV +KKTGV YA+K + LG  +  + + QLR E+ ++  LDHPNIVRL+EV+E+   ++LV
Sbjct:  251 LGSGVSGLVRKVAHKKTGVEYAVKCLDLGLIETKEGLEQLRDEIFIMCQLDHPNIVRLEEVYESHSEIYLV 321
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7S4RR16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR16_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.340e-13
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   37 GP-LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            GP LG G+ G+V+ V +K TGV YA+K + LG     +   QLR E+ ++R LDHPNIVRL+EV+E+E  ++LV
Sbjct:  398 GPVLGSGISGLVRLVTHKATGVKYAVKCLDLGLIDTEEGAQQLREEIIIMRQLDHPNIVRLEEVYESESEIYLV 471
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7R9ZQB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQB4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.500e-13
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   34 EGP-LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            +GP LG G+ G+V+ V++K TGV YA+K + LG   + + +AQLR E+ ++  LDHPNIVRL+EV+E+   ++LV
Sbjct:  244 DGPVLGSGVSGLVRLVEHKATGVKYAVKCLDLGLVGSKEGLAQLREEIFIMCQLDHPNIVRLEEVYESHSEIYLV 318
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A078ASC0_STYLE (Protein kinase domain containing protein n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078ASC0_STYLE)

HSP 1 Score: 72.0 bits (175), Expect = 4.020e-13
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   10 DFHDFYDLEGPLGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLVM 258
            + +DFY +EG LG+G   VV+K  NKKTG   A+K +P     N      L++E+D++  +DHPNIV+L EV+E E S  LVM
Sbjct:    7 NINDFYKIEGDLGQGSFAVVKKGVNKKTGEKVAIKIIPKSQ-LNEDDRIGLQNEIDILTHVDHPNIVKLFEVYEDESSYSLVM 88
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BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Match: A0A7S2PF46_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PF46_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.500e-13
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   34 EGP-LGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKAMAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLV 255
            +GP LG G+ G+V+ VK+KKTGV YA+K + L    + + + QL+ E+ ++  LDHPNIVRL+EV+E+   ++LV
Sbjct:    3 DGPVLGSGISGIVRLVKHKKTGVQYAVKCLDLALIDSEEGLKQLKEEIYIMCQLDHPNIVRLEEVYESHSEIYLV 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61730.13729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI95_ECTSI1.210e-1890.00Protein kinase domain containing protein n=2 Tax=E... [more]
A0A7R9VKN8_9STRA1.050e-1649.30Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3PXR4_9STRA7.050e-1648.78Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1FVZ1_9STRA6.920e-1446.48Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1FWM3_9STRA6.930e-1446.48Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1E7FG13_9STRA9.530e-1449.30Pkinase-domain-containing protein n=1 Tax=Fragilar... [more]
A0A7S4RR16_9STRA2.340e-1350.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7R9ZQB4_9STRA2.500e-1348.00Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A078ASC0_STYLE4.020e-1345.78Protein kinase domain containing protein n=2 Tax=O... [more]
A0A7S2PF46_9STRA4.500e-1346.67Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61730contigH-elongata_contig61730:589..2213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D7FI95
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-26_002050.1
Exons2
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.7335336-CDS-H-elongata_contig61730:588..7081622930995.7335336-CDS-H-elongata_contig61730:588..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61730 589..708 -
1691679654.961701-CDS-H-elongata_contig61730:588..7081691679654.961701-CDS-H-elongata_contig61730:588..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61730 589..708 -
1622930995.7821367-CDS-H-elongata_contig61730:2075..22131622930995.7821367-CDS-H-elongata_contig61730:2075..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61730 2076..2213 -
1691679654.975282-CDS-H-elongata_contig61730:2075..22131691679654.975282-CDS-H-elongata_contig61730:2075..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61730 2076..2213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61730.13729.1prot_H-elongata_contig61730.13729.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61730 589..2213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61730.13729.1

>prot_H-elongata_contig61730.13729.1 ID=prot_H-elongata_contig61730.13729.1|Name=mRNA_H-elongata_contig61730.13729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MHSDFHDFYDLEGPLGEGLQGVVQKVKNKKTGVNYAMKTVPLGHGKNSKA
MAQLRSEVDLIRGLDHPNIVRLQEVFETEDSLFLVM
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mRNA from alignment at H-elongata_contig61730:589..2213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61730.13729.1 ID=mRNA_H-elongata_contig61730.13729.1|Name=mRNA_H-elongata_contig61730.13729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1625bp|location=Sequence derived from alignment at H-elongata_contig61730:589..2213- (Himanthalia elongata Himel1 dioecious)
ATGCACAGCGATTTCCACGACTTCTACGACCTGGAAGGCCCGCTCGGAGA
GGGGCTGCAGGGGGTGGTCCAGAAGGTAAAGAACAAGAAAACGGGAGTGA
ACTACGCCATGAAGACGGTGCCCCTGGGACACGGAAAGGTAAGTACCCCC
CCCACCCACCCTCAAATAAAAGCCGGGGTTGTGTATCGCTGTAGAGTCTA
AGTAGTGTGCGTGTGCATTGCATGAAGCAATCGCCGATCTAGTCTATGCC
TTCAGGCTTCTCCGTGCCTATACGAGCGAGTTGAGACCCCTCGTGGCTTC
TCGTTGTTGACGCAAGTGTTCTCTCTTGTAAACTATATCCCATCATGGCC
TCAGCCATCCGCGACGTGCTACGACCATAGCTCTACAAGTGGCAAAAATG
CTAGAACAATCGGGTTCACGAAGGAACAATTGGAAAAATAGCCGTGATGG
TTGGTCTAGAAGTATGCATACCCCGTCACCCCCCCCCGCCGCCCCCGGCC
ATGTTAGCGTCGACGGTAGGACTCAAACCAAAACGAATTTCCAATCCATC
AGGGAAATAACTCATGAGGGTGGACGAGCTCCGAAGCACTATGGTGGCAA
GAGTATGAACTGCTTCGTACTCGTTAAAGCTGAAAACAATAAACCCTGTT
GACAGATAAACTGCTAAAAGGGCTCCAAGCCCAGTCGAAGTAGAGAGCCC
CTAAATGCAGGACGCACACCTGCATGAGCATTTGTGCAAGACGGGAAAAT
TACTTGCACTATAGTACTATTGAATATGGGGCGTCCTGCATTTAGTCGTT
TGCCGTCGATCTAAGCCAGACGTGAAAGTCGATGTTGAACAAAAAATCGA
TGTAACGATTATACTTCATATTAGTATGGCTTGAAGTTCGGGAGCGGGAG
TTGTCAGAAAAATGGAGTTTCCAAAAACACAGCGGGGAAAAACGGGTGTG
TGATCGCACACACTGAAATAGCTTCGTCGTTATATAAGTTTTCGACCAGA
TAGTCGAAGGCGTTCTTGGCGATGTGTCGGCTTACGAGTTAGAGCGGCCG
GTGGCGGCAACGGCATCTGGTAGTGTTTGTGGTATTTCCCGCTGGGGTTC
GTCAAAAATGATTCTAGGAGAACATCATCCATCCCCGGAGTGTGGCCTAG
TTGCGTGATGATGCTCCCCGGTGCGCCCGGATCAGAGAAAAACACCTGGC
CGTTTCGGTATCGATCAGTCTTGTCCCCAAGCATTTGCAATGCGCCAGTT
GTTGTGTGCGACAGCGCGTCGCTTCTTCATCCCTTTGCGTGAACGTCCTG
CAACACCGCCTACGGCCCTCACGCCCCCTCCTCCGCCCCCTTCGTTGTCT
TTCCGAATCCACACGAAATAACCACCCCGTTTTCCCTGGATGTTTGTATC
CCCGGTCCCCTTCTTTTTCCGCTGTTTGCTTGTTTTTGTTTGTTTATTGG
GGGGTGGGGTGTCTCGTGGCTTGTGCGGCGGGCGCGTGGCTACGATGACT
TTCAGAACTCTAAGGCGATGGCTCAGCTCCGCAGCGAGGTGGATCTAATC
CGAGGGCTCGACCATCCAAACATCGTCAGGCTCCAGGAGGTTTTCGAGAC
GGAGGACTCGCTCTTTCTCGTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig61730:589..2213-

>mRNA_H-elongata_contig61730.13729.1 ID=mRNA_H-elongata_contig61730.13729.1|Name=mRNA_H-elongata_contig61730.13729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig61730:589..2213- (Himanthalia elongata Himel1 dioecious)
ATGCACAGCGATTTCCACGACTTCTACGACCTGGAAGGCCCGCTCGGAGA
GGGGCTGCAGGGGGTGGTCCAGAAGGTAAAGAACAAGAAAACGGGAGTGA
ACTACGCCATGAAGACGGTGCCCCTGGGACACGGAAAGATGCACAGCGAT
TTCCACGACTTCTACGACCTGGAAGGCCCGCTCGGAGAGGGGCTGCAGGG
GGTGGTCCAGAAGGTAAAGAACAAGAAAACGGGAGTGAACTACGCCATGA
AGACGGTGCCCCTGGGACACGGAAAGAACTCTAAGGCGATGGCTCAGCTC
CGCAGCGAGGTGGATCTAATCCGAGGGCTCGACCATCCAAACATCGTCAG
GCTCCAGGAGGTTTTCGAGACGGAGGACTCGCTCTTTCTCGTGATGAACT
CTAAGGCGATGGCTCAGCTCCGCAGCGAGGTGGATCTAATCCGAGGGCTC
GACCATCCAAACATCGTCAGGCTCCAGGAGGTTTTCGAGACGGAGGACTC
GCTCTTTCTCGTGATG
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