mRNA_H-elongata_contig6170.13723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6170.13723.1
Unique NamemRNA_H-elongata_contig6170.13723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 7.540e-108
Identity = 174/205 (84.88%), Postives = 182/205 (88.78%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            IE ANY+FS IFT+EAI+KILA R+AYFIDPWNRFDIFIVIGTNLGL +LW  GRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATV          +  +ANFQTFWGSMVLLLRFSTGENWNGFMYDMVA RE C S PVYDPDMCGFT HANCTPLNGCGSWSI+PYM
Sbjct: 1319 IEGANYSFSFIFTVEAIIKILAFRRAYFIDPWNRFDIFIVIGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVGLRGA-----VDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYM 1518          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 4.990e-107
Identity = 174/221 (78.73%), Postives = 184/221 (83.26%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPH----------------EANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            IE ANY+FS IFT+EAI+KILA R+AYFIDPWNRFDIFIV+GTNLGL +LW  GRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATV +  +       H                +ANFQTFWGSMVLLLRFSTGENWNGFMYDMVA RE C S PVYDPDMCGFT HANCTPLNGCGSWSI+PYM
Sbjct:  821 IEGANYSFSFIFTVEAIIKILAFRRAYFIDPWNRFDIFIVMGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVSEPGHLFSSLWTHNGYALIMVGLRGAVDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYM 1041          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A812VYI9_SYMMI (Scn4ab protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYI9_SYMMI)

HSP 1 Score: 240 bits (613), Expect = 5.500e-73
Identity = 119/205 (58.05%), Postives = 145/205 (70.73%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            +E  N  F++IFTLEA++KI AL+  YF D WNRFD  +V+GTN GL+ LW +G + G   TI+RTFRI R+LRL+ G ES++QLFNTLLLTLP LGN+ ALLFL FFIYAVMGVQLFA V    +         ANF+ F  +M+ LLRFSTGENW+GFMYD+      C + P YD   CGF     CTPLNGCGS++IYPYM
Sbjct:   29 LETMNTMFAMIFTLEAVIKISALKSKYFSDMWNRFDFVVVVGTNAGLIFLWISGSNIGMTVTILRTFRIARLLRLMNGAESISQLFNTLLLTLPGLGNIAALLFLLFFIYAVMGVQLFAKVEYSGDHD-----EHANFRDFGIAMISLLRFSTGENWDGFMYDVGRKSSTCVNDPDYDSAYCGFNDRTGCTPLNGCGSFAIYPYM 228          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A662WJW7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJW7_9STRA)

HSP 1 Score: 206 bits (524), Expect = 7.730e-58
Identity = 105/205 (51.22%), Postives = 141/205 (68.78%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            +E +NY FS IF LEAIVKI+ LR+ Y+ D WN FD  IV+GT+ G++  +  G + G+ A+ +R+FR+GR+ RL+    S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+     T       +NFQT  G+MV L+R STGE WN  M+++ A ++ C + P YDP+MCGF+   +C PLNGCGS   + Y+
Sbjct: 1073 LEYSNYFFSTIFALEAIVKIIGLRRNYWKDSWNLFDFVIVLGTSCGMLYHFFGGSTVGTAASAVRSFRVGRLFRLLHSAPSLRQLFNTLLVTLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKLGPLNT-----SSSNFQTIAGAMVTLVRCSTGERWNDLMFEL-ANQDDCVTDPSYDPNMCGFSSDVDCVPLNGCGSPVAFAYL 1271          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A8K1CRX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRX9_PYTOL)

HSP 1 Score: 205 bits (522), Expect = 1.460e-57
Identity = 108/205 (52.68%), Postives = 134/205 (65.37%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            IE +NY F+LIFT EA +KI  L   Y+ D WNRFD  IV+G+ +GL+  W  G S G++AT  R FR+GR+ RL++   S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+       L  P   NFQT   +MV L+R +TGE WN  MY++ +T E C   P YDP MCGF    NC  LNGCGS   + Y+
Sbjct: 1203 IEFSNYVFALIFTCEAAIKITGLGHYYWKDAWNRFDFVIVLGSFIGLLYQWAGGSSVGALATSFRGFRVGRLFRLIQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFRD----LITP-TTNFQTIERAMVTLIRCATGERWNDVMYELAST-EDCVEDPTYDPTMCGFNNSPNCVALNGCGSPVAFIYL 1401          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A662XYJ8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYJ8_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.610e-57
Identity = 106/205 (51.71%), Postives = 139/205 (67.80%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            +E +NY FS IF LEAIVKI+ LR+ Y+ D WN FD  IV+GT+ G +  +  G + G+ A+ +R+FR+GR+ RL+    S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+     T       ANFQT  G+MV L+R STGE WN  M+++ A ++ C + P YDP+MCGF+   +C PLNGCGS   + Y 
Sbjct:  502 LEYSNYFFSTIFALEAIVKIIGLRRNYWKDSWNLFDFVIVLGTSCGNLYHFLGGSTVGTSASAVRSFRVGRLFRLLHSAPSLRQLFNTLLVTLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKLGPLNT-----SSANFQTIAGAMVTLVRCSTGERWNDLMFEL-ANQDDCVTDPSYDPNMCGFSSDVDCVPLNGCGSPVAFAYF 700          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A7S4DBN8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBN8_HETAK)

HSP 1 Score: 200 bits (509), Expect = 7.710e-56
Identity = 108/207 (52.17%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATR--EGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            +E  NY F+L+FT+EA++K+ ALR+AYF + WN FD  IV+ TNLGL+  W  G S GSIA+IIRTFRIGRV RLV   E++ QLF TL  TL  L NV ALLFL  FI++V  +QLF+TV    + T        NFQTF  S++ L+ FSTGENWNGFM+  VAT   + C S   Y   MCG+T    C PL+GCG+  + P+M
Sbjct:  709 LEYINYFFALVFTVEAVIKLFALRKAYFKEGWNCFDFSIVLATNLGLLFYWVFGSSIGSIASIIRTFRIGRVTRLVSRAETLNQLFQTLFSTLVGLSNVAALLFLVLFIHSVTAMQLFSTVALHDDLT-----EHMNFQTFGKSLLTLIAFSTGENWNGFMWS-VATDFDDSCSSSVSYSATMCGYTRSPGCEPLDGCGNPYVVPFM 909          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: A0A2D4C6S1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6S1_PYTIN)

HSP 1 Score: 200 bits (509), Expect = 8.170e-56
Identity = 104/205 (50.73%), Postives = 134/205 (65.37%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            IE  NY F+L+F LEA +K+  L   Y+ D WN FD  +V+G+ LG++  W  G S G++AT IR+FR+GR+ RLV+   S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+  +      +   ANFQ+   +MV L+R +TGE WN  MY++ AT+  C   P YDP MCGF     C  LNGCGS   + YM
Sbjct: 1275 IEFTNYFFALVFALEAAIKVYGLGHYYWKDRWNIFDFVLVLGSFLGMLYQWVGGSSVGTVATSIRSFRVGRLFRLVQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFGE-----LITRTANFQSITRAMVTLVRCATGERWNDMMYEL-ATQSDCTPDPDYDPHMCGFNNTLGCVDLNGCGSPVAFIYM 1473          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: K3WQ22_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ22_GLOUD)

HSP 1 Score: 194 bits (494), Expect = 4.460e-55
Identity = 105/205 (51.22%), Postives = 135/205 (65.85%), Query Frame = 1
Query:    1 IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            IE +NY F+ IFTLEA+VKI  L + Y+ D WN FD  IV G+ LG++  W  G S G++A  +R+FR  R+ RLV+   S+ QLFNTLL+TLPSL ++G LLFL FFIYA MGVQLFA V+       L  P  ANFQT   +MV L+R +TGE WN  MY++ ++++ C   P Y+P+MCGF   A C  LNGCGS   Y Y 
Sbjct:  425 IEYSNYVFAFIFTLEAVVKIAGLGRYYWKDSWNIFDFLIVSGSLLGMLYTWIGGSSVGTVAGAVRSFRTWRLFRLVQSAPSLRQLFNTLLITLPSLVSIGGLLFLIFFIYAAMGVQLFAKVKFGD----LVTP-TANFQTIARAMVTLVRCATGERWNDLMYEL-SSQDDCVEDPPYNPEMCGFNNTAGCKMLNGCGSPVAYAYF 623          
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP)

HSP 1 Score: 193 bits (490), Expect = 2.880e-53
Identity = 100/201 (49.75%), Postives = 134/201 (66.67%), Query Frame = 1
Query:   13 NYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLLWENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLRFSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWSIYPYM 615
            NY FS +F LEA++KI+ L + Y+ D WN FD  +V+G   G++     G S G+ A+ +R+FR+GR+ RLV    S+ QLFNTLL+TLPSL N+G LLFL FFIYA MGVQLFA V+  +    L  P  ANFQ+   +M+ L+R +TGE WN  MY++ A +E C S P YDP+ CG +  A+C PLNGCGS   + Y+
Sbjct: 1105 NYFFSAVFALEAVLKIIGLGKYYWKDRWNVFDFIVVLGALFGVIYQMFGGSSVGAAASTVRSFRVGRLFRLVHSAPSLRQLFNTLLITLPSLANIGGLLFLVFFIYAAMGVQLFAKVKFGE----LITP-TANFQSLLKAMITLVRCATGERWNDMMYEL-ANQEDCISDPPYDPNSCGISSDADCIPLNGCGSPVAFVYL 1299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6170.13723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE6_ECTSI7.540e-10884.88Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5JIB7_9PHAE4.990e-10778.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812VYI9_SYMMI5.500e-7358.05Scn4ab protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A662WJW7_9STRA7.730e-5851.22Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8K1CRX9_PYTOL1.460e-5752.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XYJ8_9STRA3.610e-5751.71Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S4DBN8_HETAK7.710e-5652.17Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A2D4C6S1_PYTIN8.170e-5650.73Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WQ22_GLOUD4.460e-5551.22Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G4YKH5_PHYSP2.880e-5349.75Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6170contigH-elongata_contig6170:8132..9837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.1
Seed ortholog evalue5.8e-93
Seed eggNOG ortholog2880.D7FVE6
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
Ec32 ortholog descriptionVoltage Gated Calcium/Sodium Channel subunit alpha.
Ec32 orthologEc-14_000820.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons3
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6170.13723.1prot_H-elongata_contig6170.13723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6170 8132..9837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.0182202-CDS-H-elongata_contig6170:8131..83401622930995.0182202-CDS-H-elongata_contig6170:8131..8340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6170 8132..8340 -
1691679654.6645112-CDS-H-elongata_contig6170:8131..83401691679654.6645112-CDS-H-elongata_contig6170:8131..8340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6170 8132..8340 -
1622930995.0367174-CDS-H-elongata_contig6170:8912..92611622930995.0367174-CDS-H-elongata_contig6170:8912..9261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6170 8913..9261 -
1691679654.674873-CDS-H-elongata_contig6170:8912..92611691679654.674873-CDS-H-elongata_contig6170:8912..9261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6170 8913..9261 -
1622930995.0561311-CDS-H-elongata_contig6170:9780..98371622930995.0561311-CDS-H-elongata_contig6170:9780..9837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6170 9781..9837 -
1691679654.6831734-CDS-H-elongata_contig6170:9780..98371691679654.6831734-CDS-H-elongata_contig6170:9780..9837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6170 9781..9837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6170.13723.1

>prot_H-elongata_contig6170.13723.1 ID=prot_H-elongata_contig6170.13723.1|Name=mRNA_H-elongata_contig6170.13723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
IERANYTFSLIFTLEAIVKILALRQAYFIDPWNRFDIFIVIGTNLGLVLL
WENGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVG
ALLFLQFFIYAVMGVQLFATVRQEQNQTYLYLPHEANFQTFWGSMVLLLR
FSTGENWNGFMYDMVATREGCQSQPVYDPDMCGFTYHANCTPLNGCGSWS
IYPYM
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mRNA from alignment at H-elongata_contig6170:8132..9837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6170.13723.1 ID=mRNA_H-elongata_contig6170.13723.1|Name=mRNA_H-elongata_contig6170.13723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1706bp|location=Sequence derived from alignment at H-elongata_contig6170:8132..9837- (Himanthalia elongata Himel1 dioecious)
ATCGAGAGGGCCAACTACACGTTTTCATTGATATTTACGCTGGAGGCAAT CGTCAAGGTGCGAAATGGATGTTTTTGGAGGTGTTCAATAATATGCGAGC TTCCGGATCGGGGCACGTATAAGTTATATTAGTCTTCCCAGCTAATCTTA ATCTTATGGTGATCCCACAAATAAAGATGGGGAATAAAGGGTGGCCTTTG AAAATATTCAAAAGAAGGAAATAAAACATGATTATTAGACGAGGGTGTAG AGGATAACACGTTATACCACATTACATCCTAGGGATGGTGCCCCCCCCCC CCCCGTCCATCATCCCCTCAACAAAACAGGTCGAAACGGTGATTTGATGT AAGTAACGACGTTGTCGGTAAGGTGTCGCGCCGAAAAAAAATCAAAAGCC GGTAGCAGCAGCGTTTGGTTTAGATATTGTCTGCATTGCTGAAGATAAAA GTTTAGTGGATGAGAACTCCGGCTCCCGGGGGGTGTTAGAGGTTTTATGG GTCACCTGCCGTGCTGTGAGTGTAAAGTGGTATACATCAGCTGCCACCAC CGCACTCTTGCACACCCTCGACGCAGATCCTAGCTTTGCGACAGGCGTAC TTCATCGATCCGTGGAATCGCTTCGATATTTTCATCGTCATCGGCACGAA TCTCGGGCTGGTACTCCTATGGGAGAACGGCCGGAGCTACGGTTCCATCG CAACCATCATCCGCACCTTTCGAATAGGCCGCGTGCTGAGGCTCGTCAGG GGACTCGAGTCGATGGCGCAGCTTTTCAATACCCTGCTGCTTACGCTCCC TAGTCTCGGAAACGTGGGGGCCTTATTATTTCTGCAGTTTTTCATCTACG CCGTCATGGGCGTGCAGCTCTTCGCCACGGTGAGACAAGAGCAAAATCAA ACATATCTCTATCTACCCCACGAAGGTGACGAGGTGACGGGGTAGAGCTA GACTGTGCAATACCTACCCTATATATTACGGTACATCCCAAATTGTCGCG ACAACTATTCGCAGGTAGGCCTGAAAAGGTTCGGTTTTGGAGAGATGTGG ACACCGTAAAGGTTTCGAGAGCATTATATTCTTCTTGTCTCTGCCAGAGC AGCGGTCCCCCGGGGGCATGTTGTACCCTCCTCAATATAATATAATTATA ACGATGTCTAAATATATACTGGTATATTCTTACGATGTAGAGATGTCCAT TCTTCGCTCCCTCTCCCTGTCCTCCCTTGTACATCGATCCATACTGCTGC CAATGCACTAAAATAGCACACACTGTACTGGATAGAGAGAGAATGAGAGA GAGACAGACAAATATAGTCGGGTACGCGCGAAGTGCATGCGGTGCCCACC GTCACGAGGCGCCCATACGTCCACTATATATAGTATATACCCTCGCTTGT CCCACAATTCATTCCAAACCCCAAGAGCCCTAAATTCAGACGAGTACTTC TTTCGCGGCGCACTAGGTTGGCCTCACGGGTGCCGTCGACGAGCAAGCCA ACTTTCAGACGTTCTGGGGCTCGATGGTTCTGCTGCTGCGTTTCAGCACG GGGGAGAACTGGAACGGGTTCATGTATGACATGGTAGCCACGCGCGAAGG CTGCCAGTCACAGCCCGTTTACGACCCAGACATGTGCGGCTTCACATACC ACGCCAACTGCACGCCACTCAATGGCTGCGGGAGCTGGTCGATATACCCT TACATG
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Coding sequence (CDS) from alignment at H-elongata_contig6170:8132..9837-

>mRNA_H-elongata_contig6170.13723.1 ID=mRNA_H-elongata_contig6170.13723.1|Name=mRNA_H-elongata_contig6170.13723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig6170:8132..9837- (Himanthalia elongata Himel1 dioecious)
ATCGAGAGGGCCAACTACACGTTTTCATTGATATTTACGCTGGAGGCAAT
CGTCAAGATCGAGAGGGCCAACTACACGTTTTCATTGATATTTACGCTGG
AGGCAATCGTCAAGATCCTAGCTTTGCGACAGGCGTACTTCATCGATCCG
TGGAATCGCTTCGATATTTTCATCGTCATCGGCACGAATCTCGGGCTGGT
ACTCCTATGGGAGAACGGCCGGAGCTACGGTTCCATCGCAACCATCATCC
GCACCTTTCGAATAGGCCGCGTGCTGAGGCTCGTCAGGGGACTCGAGTCG
ATGGCGCAGCTTTTCAATACCCTGCTGCTTACGCTCCCTAGTCTCGGAAA
CGTGGGGGCCTTATTATTTCTGCAGTTTTTCATCTACGCCGTCATGGGCG
TGCAGCTCTTCGCCACGGTGAGACAAGAGCAAAATCAAACATATCTCTAT
CTACCCCACGAAGATCCTAGCTTTGCGACAGGCGTACTTCATCGATCCGT
GGAATCGCTTCGATATTTTCATCGTCATCGGCACGAATCTCGGGCTGGTA
CTCCTATGGGAGAACGGCCGGAGCTACGGTTCCATCGCAACCATCATCCG
CACCTTTCGAATAGGCCGCGTGCTGAGGCTCGTCAGGGGACTCGAGTCGA
TGGCGCAGCTTTTCAATACCCTGCTGCTTACGCTCCCTAGTCTCGGAAAC
GTGGGGGCCTTATTATTTCTGCAGTTTTTCATCTACGCCGTCATGGGCGT
GCAGCTCTTCGCCACGGTGAGACAAGAGCAAAATCAAACATATCTCTATC
TACCCCACGAAGCCAACTTTCAGACGTTCTGGGGCTCGATGGTTCTGCTG
CTGCGTTTCAGCACGGGGGAGAACTGGAACGGGTTCATGTATGACATGGT
AGCCACGCGCGAAGGCTGCCAGTCACAGCCCGTTTACGACCCAGACATGT
GCGGCTTCACATACCACGCCAACTGCACGCCACTCAATGGCTGCGGGAGC
TGGTCGATATACCCTTACATGCCAACTTTCAGACGTTCTGGGGCTCGATG
GTTCTGCTGCTGCGTTTCAGCACGGGGGAGAACTGGAACGGGTTCATGTA
TGACATGGTAGCCACGCGCGAAGGCTGCCAGTCACAGCCCGTTTACGACC
CAGACATGTGCGGCTTCACATACCACGCCAACTGCACGCCACTCAATGGC
TGCGGGAGCTGGTCGATATACCCTTACATG
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