mRNA_H-elongata_contig61683.13721.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61683.13721.1
Unique NamemRNA_H-elongata_contig61683.13721.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61683.13721.1 vs. uniprot
Match: D7G5A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.690e-20
Identity = 67/151 (44.37%), Postives = 85/151 (56.29%), Query Frame = 2 
Query:  317 RAARAVFCSALILSQHVMVNANSWFMGHPS--RSSTLAVAAPGGRDRPVRDWKAISRNANKRTEESGQQAAKKVTGAVEVLEQAPPDSSTRDVEETGEAEAAPADILYLEKTAPGSLVVVLSKVAVFATVGIYGAKKAVAFTKAFFKARKE 763
            R  RA+FCSAL+LSQH +V+AN+W  G  S  RSSTLAV  PGGR+RP+RDWKAI R A ++ +                              ET  AEA     L +E+     + ++L+KV V AT G+YG KK VAF KAF KARK+
Sbjct:    8 RVPRALFCSALLLSQHAVVDANNWATGRASSSRSSTLAVMQPGGRNRPIRDWKAIKREAEEKRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETVSAEA-----LDMEEDTAEDIGIMLAKVVVIATAGVYGIKKVVAFAKAFTKARKD 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61683.13721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5A1_ECTSI2.690e-2044.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61683contigH-elongata_contig61683:418..3564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006760.1
Exons5
Model size1330
Cds size627
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.729116-UTR-H-elongata_contig61683:417..7181622930994.729116-UTR-H-elongata_contig61683:417..718Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61683 418..718 +
1691679654.5713527-UTR-H-elongata_contig61683:417..7181691679654.5713527-UTR-H-elongata_contig61683:417..718Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61683 418..718 +
1622930994.8916185-UTR-H-elongata_contig61683:3162..35641622930994.8916185-UTR-H-elongata_contig61683:3162..3564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61683 3163..3564 +
1691679654.6353986-UTR-H-elongata_contig61683:3162..35641691679654.6353986-UTR-H-elongata_contig61683:3162..3564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61683 3163..3564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.785564-CDS-H-elongata_contig61683:718..8971622930994.785564-CDS-H-elongata_contig61683:718..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 719..897 +
1691679654.5825458-CDS-H-elongata_contig61683:718..8971691679654.5825458-CDS-H-elongata_contig61683:718..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 719..897 +
1622930994.805722-CDS-H-elongata_contig61683:1253..14611622930994.805722-CDS-H-elongata_contig61683:1253..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 1254..1461 +
1691679654.598821-CDS-H-elongata_contig61683:1253..14611691679654.598821-CDS-H-elongata_contig61683:1253..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 1254..1461 +
1622930994.8229604-CDS-H-elongata_contig61683:1992..21361622930994.8229604-CDS-H-elongata_contig61683:1992..2136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 1993..2136 +
1691679654.6082497-CDS-H-elongata_contig61683:1992..21361691679654.6082497-CDS-H-elongata_contig61683:1992..2136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 1993..2136 +
1622930994.84472-CDS-H-elongata_contig61683:2673..27511622930994.84472-CDS-H-elongata_contig61683:2673..2751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 2674..2751 +
1691679654.617414-CDS-H-elongata_contig61683:2673..27511691679654.617414-CDS-H-elongata_contig61683:2673..2751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 2674..2751 +
1622930994.87015-CDS-H-elongata_contig61683:3144..31621622930994.87015-CDS-H-elongata_contig61683:3144..3162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 3145..3162 +
1691679654.62646-CDS-H-elongata_contig61683:3144..31621691679654.62646-CDS-H-elongata_contig61683:3144..3162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61683 3145..3162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61683.13721.1prot_H-elongata_contig61683.13721.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61683 719..3162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61683.13721.1

>prot_H-elongata_contig61683.13721.1 ID=prot_H-elongata_contig61683.13721.1|Name=mRNA_H-elongata_contig61683.13721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MIKLNRAARAVFCSALILSQHVMVNANSWFMGHPSRSSTLAVAAPGGRDR
PVRDWKAISRNANKRTEESGQQAAKKVTGAVEVLEQAPPDSSTRDVEETG
EAEAAPADILYLEKTAPGSLVVVLSKVAVFATVGIYGAKKAVAFTKAFFK
ARKEAAAEASTAGMSTETGDEAEGQDEATERGGEEAEEALAVTDSDGDDN
DQESHPSR*
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mRNA from alignment at H-elongata_contig61683:418..3564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61683.13721.1 ID=mRNA_H-elongata_contig61683.13721.1|Name=mRNA_H-elongata_contig61683.13721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3147bp|location=Sequence derived from alignment at H-elongata_contig61683:418..3564+ (Himanthalia elongata Himel1 dioecious)
CTCTGACTCCAGCTGCCCCACACCAGCGCCAGAATATATATATATACTTT
ATTTATAGTCGATCATTAAAGAGAGATATAGAGTGTGGTAGAGACTACTG
CTTACAACAGCTGCTGTGTGCAGCATCCAGCTCCCCTGACCAGCGTCCGA
AAATCCCGGCGGGACTGCTGACTGCTGTGCTGATGTAAAAAATATTAGAG
ACCTGCTCTGGAACACCCGACGAGCCGATCGTGCCGAGTGATTAGTGATT
TATCCAAATTGTGGCGATATCAAACCGTCGTATTCCACAATTATCATCAT
CATGATCAAACTCAACCGAGCAGCACGCGCAGTGTTCTGCTCTGCCCTGA
TACTGAGCCAACATGTCATGGTGAATGCCAACAGCTGGTTTATGGGGCAC
CCTTCACGATCATCGACGTTGGCGGTCGCTGCTCCCGGCGGAAGAGACAG
GCCCGTCCGCGACTGGAAGGCTATCAGCAGGTGGATTCCCCAATGATTGC
ACGGTTAACCGAGGCCGTTGCTTCTAATGTAGTCCGCAATATATTTGATA
GCCCCTGTGTACTGTAGCGTACCTTTTACGGCAGTCACCGTCGAACCGCG
ATACCAGGTACAAGCTAAAGTAGTACAAATACTACCTTGTATAGCTCTAG
GTTACTGTCTGTTGTCTTCGGTCGCAAGTGGGGCTGTACTTGAATTAATA
TTAATAGTACTTATTCAGGACTACTGACAGCGTAGTTCACGGAACAAGCA
GTCCTACCAGCGACTTAGATTTTGATTATCTCTTCAACCTCCAAGGCCAA
TAATATACAATGTTATATTACTTCTCCTCTCCCCAGGAACGCCAACAAGA
GGACGGAGGAAAGTGGGCAACAGGCTGCGAAGAAGGTGACAGGGGCCGTT
GAAGTGCTGGAACAGGCGCCGCCTGACAGCAGCACGAGAGATGTCGAAGA
AACCGGCGAGGCTGAGGCTGCCCCAGCCGATATTCTTTATCTTGAGAAGA
CCGCGCCTGGGTCTCTCGTCGTGGTTTTGAGTAAGGTTGCCGTGGTGAGC
GCTTGAAAAGGGTATTAGATAGGTCCTCTCGACTGTCTTCAGGGACCAGC
GCCGAGGTCGAAGTCGGCTACCTTCCGTGCGAACCTACCGATACCCCCCG
GTTATGATGATGTAGTAGAGCTCTTGGTGCATGTTTATCCTATGTACCGC
AGCGTTGTATGCTTGGGAGTTGAGATTCGGGATCATCCGACGGTGGTCTG
CTTCACTTTGCGCATAAATTTTGATCCTTCTCAAGGCTCACAAGTCGTAA
GGCTCGCAAGTCATTGGACCGTCCAAGCGGTATATTTTCGGTATAGGCCA
TAGCGATAACGTACATAATATAATCCCAAATTTCGTTCCCCTGCAAGAGA
ATGGAAAGAACCCTCGATATCGGTACAGCTCAGTACAGGCCGTCCTATTT
TCAAGCGCGAACCATTTGAGTTGTAGCTATGATACAGTACAGTACTGTAA
TGCTGCACCAGCTCGTGATAAACATATCATGCTATAGTTCTTATTATACT
ACTATTGTCCATTGCTCCGAATCAGTTCGCCACGGTCGGAATTTACGGGG
CGAAAAAGGCAGTAGCCTTCACAAAAGCTTTTTTCAAGGCCCGCAAGGAG
GCCGCAGCAGAAGCTTCGACCGCGGGCATGTCGACAGAAACTGGGGATGA
GGCAGAGGGCCAAGATGAGGTAGGCATAAAGAGCTTCACTACACAGTTAG
TTTACACTTAATAGACAGTCAGACTGGAGACCCGACGTGAAATACCACAT
TCATTTTCAGTGTTCCGACAGCTGGACTTATGCTTCGTGTCTTCGGCGTG
TTCCGTAATTAGAGGACGATCTCGGATGTCTGCGTGAACCTTCCACGCAA
CAACGGGGTGATTTTTAGTACTGGCTGACTATCGAGCTTTCGTGCCTTCG
AAACACATTACTCCTAAGACGCGTTGTTTCGAGGTGGCTGTGGATCACAG
CAGTTGTAGCATGCGTGGGAAGGTCTGTGACTATACTTCGTATGCAATAT
TTTTATGTTTTCTTGGCCCACCTACCGTCCAGCTGGCGTCCCTGATCACC
TGGTTGCAAAGGCATCAGGAACAACTATGTCAAGCGGTCACATACAGGTC
GAGTAAATCTTGCGTGGCGGTAGCATCTCTGTTGGTACACAGGGGCCAAC
GACCGTCGGCATGAACCCCGTTATTTACCCGGGCCCTCTTCCTCTCCTTC
CCACAGGCGACCGAGCGAGGGGGAGAGGAAGCAGAGGAAGCGCTAGCCGT
TACGGACAGCGATGGCGATGATAACGACCAAGAGGTGAATTATATCTGAG
ACGCTTTTCTCGGCTAACCCACAGTGACTGTCGTGGGCACCTGGCGAAAT
AAAACACAATGGACGCGCTCGAAGATTAGGGCTTTTTATTAGAGGAAAGC
CTGAGGAAGCGGAAGCCCATATGTTCTTTCCCGAGATGTGTATCAGAATG
TATAGAGATGGCGTGTTTCCATTTTGGCGTTAATGCCGCGTACTTACCTT
ACCCCCCACTTGGAACAGCATAAGGAGACTCGCTCGATGCAACACATCAT
TAGACATATCAGATTAGCCTAAAAATGCCTAGCAATATCGCGAAATTGAG
CTACTGGATTGTCGGGCAGGGCAAATAGATTAAGCGTCTGTCGTTTGTGA
ATCCCTCTTTCCCTTTCCGACTTGTAGTCACATCCCTCTAGGTGACGGAC
GGAGGTCGAATGATGCGTAAAACACGTTACATCCAAGGCCACATCGAGTG
CCCGCGCGAGTGCCACGAAAGGGTCATTATATTTGACGTCTGTCGAGAGG
CGATCCTGGGAGATTTCCATAGGGATTCATATCTTGAGCCACGCCGGAGG
TTCGACTCATATGGGTTGCAGATTATTTTAGTGACGAGGGGGGGAATATC
CGCTTTGTATGATTGCTAAAGCAATAAAGTAGAGGAAAAGCGATCCCTGT
TGTGAAAATCCCCGCCTCGTTCCAGGTTGTCGTTAATATATAATGATGTG
TAGTATAGTATAAATGGTGTGAATCGGTGTCGGTTATGCTGCTGTACGGC
TGTGTCACGTGGAGCCCGCGCGCGAGCCACTACAACACGCTGCGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig61683:418..3564+

>mRNA_H-elongata_contig61683.13721.1 ID=mRNA_H-elongata_contig61683.13721.1|Name=mRNA_H-elongata_contig61683.13721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig61683:418..3564+ (Himanthalia elongata Himel1 dioecious)
ATGATCAAACTCAACCGAGCAGCACGCGCAGTGTTCTGCTCTGCCCTGAT
ACTGAGCCAACATGTCATGGTGAATGCCAACAGCTGGTTTATGGGGCACC
CTTCACGATCATCGACGTTGGCGGTCGCTGCTCCCGGCGGAAGAGACAGG
CCCGTCCGCGACTGGAAGGCTATCAGCAGATGATCAAACTCAACCGAGCA
GCACGCGCAGTGTTCTGCTCTGCCCTGATACTGAGCCAACATGTCATGGT
GAATGCCAACAGCTGGTTTATGGGGCACCCTTCACGATCATCGACGTTGG
CGGTCGCTGCTCCCGGCGGAAGAGACAGGCCCGTCCGCGACTGGAAGGCT
ATCAGCAGGAACGCCAACAAGAGGACGGAGGAAAGTGGGCAACAGGCTGC
GAAGAAGGTGACAGGGGCCGTTGAAGTGCTGGAACAGGCGCCGCCTGACA
GCAGCACGAGAGATGTCGAAGAAACCGGCGAGGCTGAGGCTGCCCCAGCC
GATATTCTTTATCTTGAGAAGACCGCGCCTGGGTCTCTCGTCGTGGTTTT
GAGTAAGGTTGCCGTGGAACGCCAACAAGAGGACGGAGGAAAGTGGGCAA
CAGGCTGCGAAGAAGGTGACAGGGGCCGTTGAAGTGCTGGAACAGGCGCC
GCCTGACAGCAGCACGAGAGATGTCGAAGAAACCGGCGAGGCTGAGGCTG
CCCCAGCCGATATTCTTTATCTTGAGAAGACCGCGCCTGGGTCTCTCGTC
GTGGTTTTGAGTAAGGTTGCCGTGTTCGCCACGGTCGGAATTTACGGGGC
GAAAAAGGCAGTAGCCTTCACAAAAGCTTTTTTCAAGGCCCGCAAGGAGG
CCGCAGCAGAAGCTTCGACCGCGGGCATGTCGACAGAAACTGGGGATGAG
GCAGAGGGCCAAGATGAGTTCGCCACGGTCGGAATTTACGGGGCGAAAAA
GGCAGTAGCCTTCACAAAAGCTTTTTTCAAGGCCCGCAAGGAGGCCGCAG
CAGAAGCTTCGACCGCGGGCATGTCGACAGAAACTGGGGATGAGGCAGAG
GGCCAAGATGAGGCGACCGAGCGAGGGGGAGAGGAAGCAGAGGAAGCGCT
AGCCGTTACGGACAGCGATGGCGATGATAACGACCAAGAGGCGACCGAGC
GAGGGGGAGAGGAAGCAGAGGAAGCGCTAGCCGTTACGGACAGCGATGGC
GATGATAACGACCAAGAGTCACATCCCTCTAGGTGATCACATCCCTCTAG
GTGA
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