mRNA_H-elongata_contig61675.13720.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61675.13720.1
Unique NamemRNA_H-elongata_contig61675.13720.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61675.13720.1 vs. uniprot
Match: D7FKI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI1_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.560e-9
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 RGGGLASGTQISQSLYSRLLLFLNKRFFLLGAAAAVSFARFSPGVGATGGLLRPEVTVNRAG 195
            RGG   S TQ  +S Y +L  FLNKRFFLLGAAA V+ AR  P  G TGGLL   ++V++AG
Sbjct:   35 RGGADVSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAARVVPSPGTTGGLL--SLSVSKAG 94
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BLAST of mRNA_H-elongata_contig61675.13720.1 vs. uniprot
Match: A0A7S0NFI1_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NFI1_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 8.190e-7
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    7 VRGGGLASGTQISQSLYSRLLLFLNKRFFLLGAAAAVSFARFSPGVGATGGLLRPEVTVN 186
            +RGGG       +  +Y  +  FL++R+FL+GAA+AV+ A  +P +G TGG  RPE+TVN
Sbjct:   12 LRGGG---DDATAARVYRAVTGFLDRRYFLVGAASAVAMAAIAPTIGCTGGFFRPELTVN 68
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BLAST of mRNA_H-elongata_contig61675.13720.1 vs. uniprot
Match: A0A835Z827_9STRA (Putative sodium bile acid cotransporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z827_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.910e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   73 FLNKRFFLLGAAAAVSFARFSPGVGATGGLLRPEVTVNRA 192
            FLN  FF+LG    V+ A+ +PG+G TGGLLRPE+ V +A
Sbjct:   51 FLNDNFFILGLVGVVTSAKIAPGLGCTGGLLRPELVVGKA 90
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BLAST of mRNA_H-elongata_contig61675.13720.1 vs. uniprot
Match: C1DY47_MICCC (Bile Acid:Na+ symporter family n=2 Tax=Micromonas TaxID=38832 RepID=C1DY47_MICCC)

HSP 1 Score: 50.1 bits (118), Expect = 1.920e-5
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   49 SLYSRLLLFLNKRFFLLGAAAAVSFARFSPGVGATGGLLRPEVTVNR 189
            SL++R + FL   +FL+G  + V+ A  +PGVGATGG +RPE TVN+
Sbjct:  100 SLWTRTVRFLVANYFLVGMLSGVALAYLAPGVGATGGPVRPEFTVNQ 146
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BLAST of mRNA_H-elongata_contig61675.13720.1 vs. uniprot
Match: A0A6U5I6C1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5I6C1_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 9.170e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    7 VRGGGLASGTQISQSLYSRLLLFLNKRFFLLGAAAAVSFARFSPGVGATGGLLRPEVTVNRA 192
            +RGG  A+      +    LL FL++RFF++G A AV+ A   PG+G   G LRPEV+V  A
Sbjct:   78 LRGGERAARRSRLCAALGELLAFLDRRFFIVGVAVAVTAASVFPGLGLPSGPLRPEVSVRWA 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61675.13720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKI1_ECTSI7.560e-956.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0NFI1_9EUKA8.190e-745.00Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A835Z827_9STRA1.910e-555.00Putative sodium bile acid cotransporter n=1 Tax=Tr... [more]
C1DY47_MICCC1.920e-551.06Bile Acid:Na+ symporter family n=2 Tax=Micromonas ... [more]
A0A6U5I6C1_9EUKA9.170e-543.55Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61675contigH-elongata_contig61675:2960..3154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.6753213-CDS-H-elongata_contig61675:2959..31541622930994.6753213-CDS-H-elongata_contig61675:2959..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61675 2960..3154 -
1691679654.559951-CDS-H-elongata_contig61675:2959..31541691679654.559951-CDS-H-elongata_contig61675:2959..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61675 2960..3154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61675.13720.1prot_H-elongata_contig61675.13720.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61675 2960..3154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61675.13720.1

>prot_H-elongata_contig61675.13720.1 ID=prot_H-elongata_contig61675.13720.1|Name=mRNA_H-elongata_contig61675.13720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
VDVRGGGLASGTQISQSLYSRLLLFLNKRFFLLGAAAAVSFARFSPGVGA
TGGLLRPEVTVNRAG
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mRNA from alignment at H-elongata_contig61675:2960..3154-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61675.13720.1 ID=mRNA_H-elongata_contig61675.13720.1|Name=mRNA_H-elongata_contig61675.13720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig61675:2960..3154- (Himanthalia elongata Himel1 dioecious)
GTTGACGTCAGAGGAGGTGGACTAGCGTCTGGAACGCAGATCAGCCAGAG
CTTGTACAGCCGACTCTTACTTTTCTTAAATAAGCGGTTCTTCTTGCTTG
GTGCGGCGGCGGCTGTCAGCTTTGCAAGATTTTCGCCTGGCGTCGGAGCC
ACAGGAGGCTTATTGCGTCCCGAGGTTACCGTAAACAGGGCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig61675:2960..3154-

>mRNA_H-elongata_contig61675.13720.1 ID=mRNA_H-elongata_contig61675.13720.1|Name=mRNA_H-elongata_contig61675.13720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig61675:2960..3154- (Himanthalia elongata Himel1 dioecious)
GTTGACGTCAGAGGAGGTGGACTAGCGTCTGGAACGCAGATCAGCCAGAG
CTTGTACAGCCGACTCTTACTTTTCTTAAATAAGCGGTTCTTCTTGCTTG
GTGCGGCGGCGGCTGTCAGCTTTGCAAGATTTTCGCCTGGCGTCGGAGCC
ACAGGAGGCTTATTGCGTCCCGAGGTTACCGTAAACAGGGCCGGTGTTGA
CGTCAGAGGAGGTGGACTAGCGTCTGGAACGCAGATCAGCCAGAGCTTGT
ACAGCCGACTCTTACTTTTCTTAAATAAGCGGTTCTTCTTGCTTGGTGCG
GCGGCGGCTGTCAGCTTTGCAAGATTTTCGCCTGGCGTCGGAGCCACAGG
AGGCTTATTGCGTCCCGAGGTTACCGTAAACAGGGCCGGT
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