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Homology
BLAST of mRNA_H-elongata_contig61661.13719.1 vs. uniprot
Match: D7FZN9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN9_ECTSI) HSP 1 Score: 306 bits (784), Expect = 1.230e-92 Identity = 263/576 (45.66%), Postives = 315/576 (54.69%), Query Frame = 1
Query: 1 RHSKVMLPLLGWKDWSTDRLHWMYPAVVHAFPACLLDSV--------------------GAPPDRQGARSERGSREAQG-------PRGADETKAGRGVEAGSIGDVV--------GAPTSALPSPFELYSLGEVFVRTTPDNDLASVGVGGGPWRRRWLVLRQTYLFELLQPPPSPPAFSRSGSTSASLSQPRLGTTSMMMVGXXXXXXXXXXXXXXXXRLFEGTGGATMDGRRSFEEQGIPRRTRGESGKKV---------EVEEG------ERLTPPAGFLCLSRASVEEGGVDWGPRTLLLRCLARPPEISREEASSRSASGNASS------ASVSACEDSGEEKILVELRVPNDEVGAEWTRLFRSRAALEMSTIFEPAEHVVETQHQ------HPXXXXXXXXXXXXXXXXXXXXVEAETPQETDANFSVLGTGRFSKVVWAKRRRLWGDRADGKAGGDHLHAVKVMDKQAFWSRVRSGNERADALAREIFCQTLLTSHDPDVDNSPNVLCEWEGEASEVS--------------SRGSGHQRRV---GYDRGGGIVRLYSVFETATTLV 1491
R VM+PL+ W DW+ DRLHW YPAVVHAFP CL ++ GAP A E G+REA+G P+G D + G E G V A + PSPFE SLGEV +RT P +DLA GVG GPWRRRWLVLRQTY+FELL+PP SPP + L+ R G + XXXXXXXXXXXXXXXX R+ +EQ +R GE G E EG ++ P GF CLS+ASVE+GG++WGP+TLLLRC ARP +ISREEAS+ + G ASV A G KI VELRVP+ EVG W LFR RAALEM+++FEP+ E + XXXXXXXXXXXXXXXXXXXX AE ETD FSVLGTGRFS+VVWA+R+R W +AGG + A+K+++KQAFWSRVR G ER D LARE+FCQT LT D + SRG+G V GGGIVR++S+FETA L+
Sbjct: 58 RGQAVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEAANTTXXXXXQGGTRRNRCRSDGAPAMPPVAAGE-GAREARGRASGVPLPQGRDGKRDGPDEETSPWGAAVVDREAEAAEAAAANPPSPFEPLSLGEVSIRTAPASDLAPAGVGAGPWRRRWLVLRQTYMFELLEPP-SPPV------PTLVLASGRSGAGDEVGAAXXXXXXXXXXXXXXXXXXV----------RKLDQEQPQQQRLPGEMGPXXXXXXXXXXDEGREGNDDGGAQKYVAPVGFACLSKASVEDGGINWGPKTLLLRCQARPADISREEASAAAVIGGGDGDVVGGIASVRARRRVGT-KICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDFEDNTKGGGSGDSGXXXXXXXXXXXXXXXXXXXXXXAEGGVETDTGFSVLGTGRFSRVVWARRKRPWA-----RAGGS-VSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAGGAEAVVACDGTGGGGIVRIHSIFETADDLI 608
BLAST of mRNA_H-elongata_contig61661.13719.1 vs. uniprot
Match: A0A6H5KPH2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH2_9PHAE) HSP 1 Score: 274 bits (700), Expect = 2.000e-77 Identity = 232/595 (38.99%), Postives = 288/595 (48.40%), Query Frame = 1
Query: 1 RHSKVMLPLLGWKDWSTDRLHWMYPAVVHAFPACLLDSVGAPPD----RQGARSER----GS------------REAQG-------PRGADETKAGRGVEAGSIGDVV-------GAPTSALPSPFELYSLGEVFVRTTPDNDLASVGVGGGPWRRRWLVLRQTYLFELLQPP--PSPPAFSRSGSTSAS----------LSQPRLGTTSMMMVGXXXXXXXXXXXXXXXXRLFEGTGGATMDGRRSFEEQGIPRRTRGESGKKVEVEE-----------------------GERLTPPAGFLCLSRASVEEGGVDWGPRTLLLRCLAR-----------PPEISREEASSRSASGNASSASVSACEDSGEEKILVELRVPNDEVGAEWTRLFRSRAALEMSTIFEPAEHVVETQHQHPXXXXXXXXXXXXXXXXXXXXVE-----AETPQETDANFSVLGTGRFSKVVWAKRRRLWGDRADGKAGGDHLHAVKVMDKQAFWSRVRSGNERADALAREIFCQTLLTSHDPDVDNSP----------NVLCEWEGEASEVSSRGSGHQRRVGY---DRGGGIVRLYSVFETATTLV 1491
R VM+PL+ W DW+ DRLHW YPAVVHAFP CL ++ ++G R R G+ REA+G P+G + + G E +G V A + PSPFE SLGEV++RT P +DLA GVG GPWRRRWLVLRQTY+FELL+PP P P SG LS + + G X R +++ +R GE G ++ P GF+CLS+ASVE+GG+DWGP+TLLL C A+ P SASV A G KI VELRVP+ E+G W LFR RAALEM+++FEP E + XXXXXXXXXXXXXXXXXXXX E ETD FSVLGTGRFS+VVWA+R+R W +AGG + A+K+++KQAFWSRVR G ER D LARE+FCQT LT + + SSRG+G VG GGGIVR++S+FETA L+
Sbjct: 521 RGQSVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEAASXXXXXXXXQEGTRRNRCRSDGAPAIPPVAAGEVPREARGQASGVLLPQGGNGKRDGPDEETSPLGAAVVDREAEVAAAGAIPPSPFEPLSLGEVYIRTAPASDLAPAGVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLASGQAGXXXXXXXXXXXPLSDAVAVDGTAVFFGSRSRGGDEGGATAVEXXXXXXXXXXXXXKVRKLDQEQPQQRLPGEMGPXXXXXXXXXXXXXRGXXXXXXXXXXXXXGAQQYVAPVGFVCLSKASVEDGGIDWGPKTLLLSCGAKLAPRTSLAKRLAPPXXXXXXXXXXXXXXXXSASVRARRRVGT-KICVELRVPSPEIGERWAALFRERAALEMASLFEPCPPDFEDNTKGXXXXXXXXXXXXXXXXXXXXXXXRFSGVTEGAVETDTGFSVLGTGRFSRVVWARRKRPWA-----RAGGS-VSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGAEAASGAAXXXXXXXXXXXXXXXXXXXXXXSSRGAGGPGAVGACDGAGGGGIVRIHSIFETADDLI 1108
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 311.6 |
| Seed ortholog evalue | 6.5e-82 |
| Seed eggNOG ortholog | 2880.D7FZN9 |
| EggNOG free text desc. | protein serine/threonine kinase activity |
| EggNOG OGs | KOG0032@1,KOG0032@2759 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Protein kinase-like domain |
| Ec32 ortholog | Ec-08_001170.1 |
| Exons | 3 |
| Model size | 1491 |
| Cds size | 1476 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930994.5811887-CDS-H-elongata_contig61661:270..534 | 1622930994.5811887-CDS-H-elongata_contig61661:270..534 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig61661 271..534 - |
| 1691679654.4894464-CDS-H-elongata_contig61661:270..534 | 1691679654.4894464-CDS-H-elongata_contig61661:270..534 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig61661 271..534 - |
| 1622930994.595807-CDS-H-elongata_contig61661:809..1076 | 1622930994.595807-CDS-H-elongata_contig61661:809..1076 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig61661 810..1076 - |
| 1691679654.5122237-CDS-H-elongata_contig61661:809..1076 | 1691679654.5122237-CDS-H-elongata_contig61661:809..1076 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig61661 810..1076 - |
| 1622930994.6083953-CDS-H-elongata_contig61661:1370..2315 | 1622930994.6083953-CDS-H-elongata_contig61661:1370..2315 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig61661 1371..2315 - |
| 1691679654.5290718-CDS-H-elongata_contig61661:1370..2315 | 1691679654.5290718-CDS-H-elongata_contig61661:1370..2315 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig61661 1371..2315 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930994.6234198-UTR-H-elongata_contig61661:2315..2330 | 1622930994.6234198-UTR-H-elongata_contig61661:2315..2330 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig61661 2316..2330 - |
| 1691679654.5430312-UTR-H-elongata_contig61661:2315..2330 | 1691679654.5430312-UTR-H-elongata_contig61661:2315..2330 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig61661 2316..2330 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61661.13719.1 >prot_H-elongata_contig61661.13719.1 ID=prot_H-elongata_contig61661.13719.1|Name=mRNA_H-elongata_contig61661.13719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=492bp
MLPLLGWKDWSTDRLHWMYPAVVHAFPACLLDSVGAPPDRQGARSERGSR EAQGPRGADETKAGRGVEAGSIGDVVGAPTSALPSPFELYSLGEVFVRTT PDNDLASVGVGGGPWRRRWLVLRQTYLFELLQPPPSPPAFSRSGSTSASL SQPRLGTTSMMMVGRGRGGGGGGTGGGGRGRLFEGTGGATMDGRRSFEEQ GIPRRTRGESGKKVEVEEGERLTPPAGFLCLSRASVEEGGVDWGPRTLLL RCLARPPEISREEASSRSASGNASSASVSACEDSGEEKILVELRVPNDEV GAEWTRLFRSRAALEMSTIFEPAEHVVETQHQHPEKKHPEEEEGLGKGGG SGEGVEAETPQETDANFSVLGTGRFSKVVWAKRRRLWGDRADGKAGGDHL HAVKVMDKQAFWSRVRSGNERADALAREIFCQTLLTSHDPDVDNSPNVLC EWEGEASEVSSRGSGHQRRVGYDRGGGIVRLYSVFETATTLV back to topmRNA from alignment at H-elongata_contig61661:271..2330- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig61661.13719.1 ID=mRNA_H-elongata_contig61661.13719.1|Name=mRNA_H-elongata_contig61661.13719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2060bp|location=Sequence derived from alignment at H-elongata_contig61661:271..2330- (Himanthalia elongata Himel1 dioecious) CGACATTCGAAGGTCATGCTGCCGCTGCTTGGCTGGAAAGACTGGAGCAC
GGACCGCCTGCATTGGATGTACCCCGCCGTTGTCCACGCCTTCCCAGCGT
GCTTGCTCGACTCGGTGGGAGCACCACCAGATAGGCAAGGGGCACGGAGC
GAGCGTGGCAGTCGTGAAGCCCAGGGCCCCCGCGGAGCCGACGAAACCAA
AGCGGGGAGGGGGGTGGAAGCGGGGTCAATCGGTGACGTTGTTGGGGCGC
CGACGTCGGCGTTGCCTAGCCCATTCGAGCTTTACTCGCTGGGCGAGGTG
TTTGTGAGGACCACACCCGATAACGACTTGGCCTCAGTCGGCGTTGGGGG
CGGTCCGTGGCGAAGGCGGTGGCTAGTGCTCCGACAGACGTATCTCTTCG
AGCTGTTGCAGCCACCACCATCACCACCAGCGTTCTCGCGATCCGGGTCG
ACATCCGCGTCCTTGTCCCAGCCTAGGCTGGGGACGACTTCCATGATGAT
GGTGGGACGAGGCCGAGGTGGTGGCGGAGGAGGGACGGGGGGAGGAGGGA
GAGGAAGACTATTTGAAGGTACTGGTGGCGCGACGATGGATGGGAGGAGG
TCGTTCGAAGAACAAGGGATTCCAAGACGGACACGAGGAGAAAGCGGAAA
GAAGGTAGAAGTAGAGGAAGGCGAGAGACTGACTCCCCCTGCGGGATTCC
TTTGTCTCAGCAGGGCTTCCGTGGAGGAAGGTGGGGTAGATTGGGGGCCG
AGAACGCTGTTGCTTAGGTGCCTAGCACGACCCCCAGAGATTTCACGAGA
AGAAGCCAGCAGCAGAAGTGCTAGCGGCAATGCAAGCAGTGCCAGTGTGA
GTGCCTGCGAAGATAGCGGTGAAGAGAAGATTCTGGTGGAGTTGCGGGTG
CCCAACGACGAGGTCGGCGCCGAATGGACCCGGCTTTTCCGCAGTCGTGC
CGCGCTCGAGGTGAAGCACCGAGGACAAACTCTCCAGCGCGCACTGTATA
ATATCATATTCTTATTACCGTATTATTATTTTAATCGTATTGCGTTGCGA
TGTGTCCCATGCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCC
CCCCCTCCCCACACTTCGCACTTAATGCTAATGCGCATATATACATATAT
ATATATATATATTTATATATATATATATATTTATATATATATATGCCGAA
ATTGAAGTCTTATTCTTCGCTGCTCTTCCCTATTGCGTACCTTTGTCCTC
AAAGATGTCGACTATATTCGAGCCCGCAGAACATGTTGTCGAGACGCAGC
ACCAGCACCCGGAAAAAAAACATCCTGAGGAAGAGGAAGGTCTTGGAAAA
GGTGGTGGCAGTGGTGAAGGCGTAGAGGCAGAGACACCGCAAGAGACCGA
CGCGAATTTTTCTGTGCTTGGAACCGGTCGGTTTTCGAAGGTCGTTTGGG
CCAAGAGACGCCGCCTTTGGGGGGATAGGGCCGACGGAAAAGCGGGTGGT
GACCACCTACACGCTGTGAAGGTATAGCAGTGACAAGTGAGGGATAAGAC
CATCTCGTCGGTCTTCTGCCTCCGCCTCCGCTCCCGATTTCTTTTTCTCC
CTTCCTTTCCTCCTCTTTCTATTGCTGCTAAAGACTACAGTTTGCGCCTG
ATGTCGGCATCTTGGAGCTATCGTCGGTGGATGGTGGATGGATGGTGCTG
CCTCTCACGTCCTCGGTGGATGTTGATAGAGTTGGAAATGTCATGTGATG
ATGGTTCCCCCGCCCTCCCATTTTACCATGTGATGAAATCAAGCAGGTAA
TGGACAAGCAAGCATTTTGGTCGCGAGTTCGTAGCGGCAACGAAAGAGCC
GATGCGCTCGCCCGAGAGATCTTCTGTCAAACGTTGCTCACGTCACACGA
TCCAGACGTCGACAATAGCCCCAATGTCCTCTGCGAGTGGGAAGGAGAAG
CTTCCGAGGTATCTTCTCGCGGCAGTGGCCATCAACGCCGGGTCGGCTAC
GACCGCGGCGGCGGAATTGTGCGCCTCTACAGCGTCTTCGAGACGGCCAC
TACGCTGGTG back to topCoding sequence (CDS) from alignment at H-elongata_contig61661:271..2330- >mRNA_H-elongata_contig61661.13719.1 ID=mRNA_H-elongata_contig61661.13719.1|Name=mRNA_H-elongata_contig61661.13719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2952bp|location=Sequence derived from alignment at H-elongata_contig61661:271..2330- (Himanthalia elongata Himel1 dioecious) ATGCTGCCGCTGCTTGGCTGGAAAGACTGGAGCACGGACCGCCTGCATTG GATGTACCCCGCCGTTGTCCACGCCTTCCCAGCGTGCTTGCTCGACTCGG TGGGAGCACCACCAGATAGGCAAGGGGCACGGAGCGAGCGTGGCAGTCGT GAAGCCCAGGGCCCCCGCGGAGCCGACGAAACCAAAGCGGGGAGGGGGGT GGAAGCGGGGTCAATCGGTGACGTTGTTGGGGCGCCGACGTCGGCGTTGC CTAGCCCATTCGAGCTTTACTCGCTGGGCGAGGTGTTTGTGAGGACCACA CCCGATAACGACTTGGCCTCAGTCGGCGTTGGGGGCGGTCCGTGGCGAAG GCGGTGGCTAGTGCTCCGACAGACGTATCTCTTCGAGCTGTTGCAGCCAC CACCATCACCACCAGCGTTCTCGCGATCCGGGTCGACATCCGCGTCCTTG TCCCAGCCTAGGCTGGGGACGACTTCCATGATGATGGTGGGACGAGGCCG AGGTGGTGGCGGAGGAGGGACGGGGGGAGGAGGGAGAGGAAGACTATTTG AAGGTACTGGTGGCGCGACGATGGATGGGAGGAGGTCGTTCGAAGAACAA GGGATTCCAAGACGGACACGAGGAGAAAGCGGAAAGAAGGTAGAAGTAGA GGAAGGCGAGAGACTGACTCCCCCTGCGGGATTCCTTTGTCTCAGCAGGG CTTCCGTGGAGGAAGGTGGGGTAGATTGGGGGCCGAGAACGCTGTTGCTT AGGTGCCTAGCACGACCCCCAGAGATTTCACGAGAAGAAGCCAGCAGCAG AAGTGCTAGCGGCAATGCAAGCAGTGCCAGTGTGAGTGCCTGCGAAGATA GCGGTGAAGAGAAGATTCTGGTGGAGTTGCGGGTGCCCAACGACGAGGTC GGCGCCGAATGGACCCGGCTTTTCCGCAGTCGTGCCGCGCTCGAGATGCT GCCGCTGCTTGGCTGGAAAGACTGGAGCACGGACCGCCTGCATTGGATGT ACCCCGCCGTTGTCCACGCCTTCCCAGCGTGCTTGCTCGACTCGGTGGGA GCACCACCAGATAGGCAAGGGGCACGGAGCGAGCGTGGCAGTCGTGAAGC CCAGGGCCCCCGCGGAGCCGACGAAACCAAAGCGGGGAGGGGGGTGGAAG CGGGGTCAATCGGTGACGTTGTTGGGGCGCCGACGTCGGCGTTGCCTAGC CCATTCGAGCTTTACTCGCTGGGCGAGGTGTTTGTGAGGACCACACCCGA TAACGACTTGGCCTCAGTCGGCGTTGGGGGCGGTCCGTGGCGAAGGCGGT GGCTAGTGCTCCGACAGACGTATCTCTTCGAGCTGTTGCAGCCACCACCA TCACCACCAGCGTTCTCGCGATCCGGGTCGACATCCGCGTCCTTGTCCCA GCCTAGGCTGGGGACGACTTCCATGATGATGGTGGGACGAGGCCGAGGTG GTGGCGGAGGAGGGACGGGGGGAGGAGGGAGAGGAAGACTATTTGAAGGT ACTGGTGGCGCGACGATGGATGGGAGGAGGTCGTTCGAAGAACAAGGGAT TCCAAGACGGACACGAGGAGAAAGCGGAAAGAAGGTAGAAGTAGAGGAAG GCGAGAGACTGACTCCCCCTGCGGGATTCCTTTGTCTCAGCAGGGCTTCC GTGGAGGAAGGTGGGGTAGATTGGGGGCCGAGAACGCTGTTGCTTAGGTG CCTAGCACGACCCCCAGAGATTTCACGAGAAGAAGCCAGCAGCAGAAGTG CTAGCGGCAATGCAAGCAGTGCCAGTGTGAGTGCCTGCGAAGATAGCGGT GAAGAGAAGATTCTGGTGGAGTTGCGGGTGCCCAACGACGAGGTCGGCGC CGAATGGACCCGGCTTTTCCGCAGTCGTGCCGCGCTCGAGATGTCGACTA TATTCGAGCCCGCAGAACATGTTGTCGAGACGCAGCACCAGCACCCGGAA AAAAAACATCCTGAGGAAGAGGAAGGTCTTGGAAAAGGTGGTGGCAGTGG TGAAGGCGTAGAGGCAGAGACACCGCAAGAGACCGACGCGAATTTTTCTG TGCTTGGAACCGGTCGGTTTTCGAAGGTCGTTTGGGCCAAGAGACGCCGC CTTTGGGGGGATAGGGCCGACGGAAAAGCGGGTGGTGACCACCTACACGC TGTGAAGATGTCGACTATATTCGAGCCCGCAGAACATGTTGTCGAGACGC AGCACCAGCACCCGGAAAAAAAACATCCTGAGGAAGAGGAAGGTCTTGGA AAAGGTGGTGGCAGTGGTGAAGGCGTAGAGGCAGAGACACCGCAAGAGAC CGACGCGAATTTTTCTGTGCTTGGAACCGGTCGGTTTTCGAAGGTCGTTT GGGCCAAGAGACGCCGCCTTTGGGGGGATAGGGCCGACGGAAAAGCGGGT GGTGACCACCTACACGCTGTGAAGGTAATGGACAAGCAAGCATTTTGGTC GCGAGTTCGTAGCGGCAACGAAAGAGCCGATGCGCTCGCCCGAGAGATCT TCTGTCAAACGTTGCTCACGTCACACGATCCAGACGTCGACAATAGCCCC AATGTCCTCTGCGAGTGGGAAGGAGAAGCTTCCGAGGTATCTTCTCGCGG CAGTGGCCATCAACGCCGGGTCGGCTACGACCGCGGCGGCGGAATTGTGC GCCTCTACAGCGTCTTCGAGACGGCCACTACGCTGGTGGTAATGGACAAG CAAGCATTTTGGTCGCGAGTTCGTAGCGGCAACGAAAGAGCCGATGCGCT CGCCCGAGAGATCTTCTGTCAAACGTTGCTCACGTCACACGATCCAGACG TCGACAATAGCCCCAATGTCCTCTGCGAGTGGGAAGGAGAAGCTTCCGAG GTATCTTCTCGCGGCAGTGGCCATCAACGCCGGGTCGGCTACGACCGCGG CGGCGGAATTGTGCGCCTCTACAGCGTCTTCGAGACGGCCACTACGCTGG TG back to top
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