mRNA_H-elongata_contig61470.13703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61470.13703.1
Unique NamemRNA_H-elongata_contig61470.13703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61470.13703.1 vs. uniprot
Match: A0A6H5KSV6_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.510e-48
Identity = 131/339 (38.64%), Postives = 179/339 (52.80%), Query Frame = 1 
Query:    7 HIDKVIGSVSSEVCQMTATCTDDSILIGLDGMRLKAIASISTNAERVAKKAFLRDIPVMSVLSDSDVNIIEKLFTICTLSENQVLCREGTRADHLYVVKRGFFRLLKAFLPNDTPFAGDGDKDTVSSESLQYAGGRR---------LMHFDLGEIGAKEMLGESGLFYQAGAFSGATGTRGGATDPSESTGGCETAPCPPHSSARAITSNSTETSRETQANHNATPIFKTAL-ATKVRGPLLTTSLASPICATSGVGASRKGFHIASVVASTGDSQVYTASISDMKRLLKDSPSFRRFC---EIARRVHEARVSGWDAQALAEQLRNQREWEKYKREVV 984
            H +KVIGS+   V  +TA C   + ++ L   R  A+ + S  AERVAKKAFL+   V S L+D D+N +E LFT  TL +NQV+C EG+R DH+YVVKRGF R+LKAFLP +      G     S+ +   A  RR         L +FDLGEIG K+MLGE+G+          +      T P+ +     T P    S   A   +    +R    +H A+ +   A  A+       T    SP  AT G+   RK  +I S  AS G ++VY A++ D+K+L  DS     FC   + A+R+H+AR   W A ALA+QLR + EWE  K EV+
Sbjct:  134 HQNKVIGSIKPIVGMLTARCETYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLNDDDLNTVETLFTAITLHDNQVICMEGSRVDHVYVVKRGFLRILKAFLPEEDADCRSGPPSHASTVAAGAASARRSSLADVETRLKYFDLGEIGPKDMLGENGMLKHLDTSLVLS------TTPAPAATESVTLPAIASSQEDAQHLSQPTDARADTIDHGASTLDGDAGDASPPSADAATDGAGSPRVATMGL---RKPAYIISAAASGGTAEVYVANVYDLKKLQTDS-----FCYCWKTAQRLHQARAQAWGAGALAQQLRRRNEWEARKGEVL 458
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BLAST of mRNA_H-elongata_contig61470.13703.1 vs. uniprot
Match: D7FJW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW3_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 5.970e-48
Identity = 131/341 (38.42%), Postives = 180/341 (52.79%), Query Frame = 1 
Query:    7 HIDKVIGSVSSEVCQMTATCTDDSILIGLDGMRLKAIASISTNAERVAKKAFLRDIPVMSVLSDSDVNIIEKLFTICTLSENQVLCREGTRADHLYVVKRGFFRLLKAFLPNDTPFAGDGDKDTVSSESLQYAGGR---------RLMHFDLGEIGAKEMLGESGLFYQ---AGAFSGATGTRGGATDPSESTGGCETAPCPPHSSARAIT---SNSTETSRETQANHNATPIFKTALATKVRGPLLTTSLASPICATSGVGASRKGFHIASVVASTGDSQVYTASISDMKRLLKDSPSFRRFCEIARRVHEARVSGWDAQALAEQLRNQREWEKYKREVV 984
            ++ +VIGS+   V  +TA C   + ++ L      A+ + S  AERVAKKAFL+   V S L+D D+N +E LFT  TL +NQV+C+EG+R DH+YVVKRGF R+LKAFLP +                                RL HFDLGEIG K+MLGE+G+      + AFS         T P  +T   ET   P  +S++      S  TET  +T  +  +TP + T  A+       T    S   AT G    RK  +I S  AS G ++VY A++ D+K+L  DS  FR   + A+R+H+AR   W  +ALA+QLR Q EW+  KR V+
Sbjct:  170 NVGEVIGSIEPIVGMLTARCEAYTTVLCLGSDSFAAVVNDSVCAERVAKKAFLKCSAVFSTLNDDDLNTVETLFTTVTLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEEXXXXXXXXXXXXXXXXXXXXXXXXXXSADVETRLKHFDLGEIGPKDMLGENGMLKHLDTSSAFS--------TTPPPAAT---ETVALPAIASSQEDAQHLSQPTETPGDTTDHGASTPDWDTGDASPPSADAATDRAGSSRVATIGP---RKPAYIISAAASGGTAEVYVANVYDLKKLQTDS--FRYCWKTAQRLHQARAQAWGVEALAQQLRRQNEWDARKRGVL 494
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61470.13703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSV6_9PHAE1.510e-4838.64Cyclic nucleotide-binding domain-containing protei... [more]
D7FJW3_ECTSI5.970e-4838.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61470contigH-elongata_contig61470:1701..3317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclic nucleotide-binding domain
Ec32 orthologEc-10_000700.1
Exons3
Model size984
Cds size984
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61470.13703.1prot_H-elongata_contig61470.13703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61470 1701..3317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.550812-CDS-H-elongata_contig61470:1700..19311622930992.550812-CDS-H-elongata_contig61470:1700..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61470 1701..1931 -
1691679653.902589-CDS-H-elongata_contig61470:1700..19311691679653.902589-CDS-H-elongata_contig61470:1700..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61470 1701..1931 -
1622930992.567775-CDS-H-elongata_contig61470:1976..25731622930992.567775-CDS-H-elongata_contig61470:1976..2573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61470 1977..2573 -
1691679653.9103725-CDS-H-elongata_contig61470:1976..25731691679653.9103725-CDS-H-elongata_contig61470:1976..2573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61470 1977..2573 -
1622930992.5826645-CDS-H-elongata_contig61470:3161..33171622930992.5826645-CDS-H-elongata_contig61470:3161..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61470 3162..3317 -
1691679653.9215205-CDS-H-elongata_contig61470:3161..33171691679653.9215205-CDS-H-elongata_contig61470:3161..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61470 3162..3317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61470.13703.1

>prot_H-elongata_contig61470.13703.1 ID=prot_H-elongata_contig61470.13703.1|Name=mRNA_H-elongata_contig61470.13703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=328bp
MVHIDKVIGSVSSEVCQMTATCTDDSILIGLDGMRLKAIASISTNAERVA
KKAFLRDIPVMSVLSDSDVNIIEKLFTICTLSENQVLCREGTRADHLYVV
KRGFFRLLKAFLPNDTPFAGDGDKDTVSSESLQYAGGRRLMHFDLGEIGA
KEMLGESGLFYQAGAFSGATGTRGGATDPSESTGGCETAPCPPHSSARAI
TSNSTETSRETQANHNATPIFKTALATKVRGPLLTTSLASPICATSGVGA
SRKGFHIASVVASTGDSQVYTASISDMKRLLKDSPSFRRFCEIARRVHEA
RVSGWDAQALAEQLRNQREWEKYKREVV
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mRNA from alignment at H-elongata_contig61470:1701..3317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61470.13703.1 ID=mRNA_H-elongata_contig61470.13703.1|Name=mRNA_H-elongata_contig61470.13703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-elongata_contig61470:1701..3317- (Himanthalia elongata Himel1 dioecious)
ATGGTACATATCGACAAGGTGATAGGCAGCGTTTCATCGGAGGTATGCCA
GATGACGGCCACGTGCACCGACGATAGCATCCTGATTGGTCTAGATGGTA
TGCGACTCAAGGCGATCGCTAGCATCTCAACCAACGCAGAACGCGTGGCA
AAGAAGGTAGGTGGGTATGGTCCGCGGGGAAATTTTTATTGGCGCGAAGA
GCGTGCAGCGTCAAGTGAGTGCTTTGTTGAACACCTTACGTGCTGCTTTT
ACCGAAACCTTCCCGCTTTAAAGAAGGAGAGCTACGAGGGTAACCGATCA
TAAGTGATGCATATGGCCGACGTCGTTCGACGACGGTGACAGGAGAAATC
GGGGGTCAAGCCTCGTGAGTATCTGCCGTGGCTGCTACTATTACCGCCGC
CACTACCACTGCTGCTGCAATATGAATCAGTTTTCGCGCGGGTTGAGGCA
ATCATCACTCTGACAAGTTCGAACATTACTTGTTGCGTGTGTTTTCTTAA
TTGTTTGGTGGTTGAGGCGCTGACATCGAGCATATTCGAGAGGCGCAGCG
TTGCTAGCGATTCCAAATTGAATCGACTACTGGTCAGCGCGTCCTTAGAT
GCCTAATCTTGGGTGTTTGGTGGTAAAGCTAGAGCCCATTAGGATTCACA
GAGATAAGGTACCAACCATCTCCGTTCACGGCGTTCCTGTTGTCGCACAC
CTTTCCTTTGGCTACTACCTGGTACCGTGAAAATCCACCGCCAGGCATTC
CTTAGGGACATCCCAGTAATGTCTGTGCTCAGCGACAGCGATGTCAACAT
TATCGAGAAGCTGTTCACTATTTGTACACTGAGCGAGAACCAAGTGCTCT
GTCGAGAGGGGACTCGGGCTGACCATTTGTACGTGGTAAAACGCGGGTTC
TTCCGCCTCTTAAAGGCGTTTTTACCCAATGATACTCCTTTCGCTGGCGA
TGGCGACAAGGATACGGTATCGAGCGAAAGTCTGCAGTATGCTGGCGGGA
GACGGCTGATGCATTTCGATCTAGGAGAGATCGGGGCGAAGGAGATGCTG
GGCGAGAGCGGTCTGTTTTATCAGGCGGGGGCTTTTTCAGGGGCCACGGG
CACTAGGGGTGGGGCTACAGACCCATCAGAATCGACGGGCGGATGCGAGA
CAGCCCCGTGTCCTCCCCATTCCTCTGCACGGGCAATCACAAGTAATTCA
ACAGAAACGAGTAGAGAAACGCAGGCTAATCACAACGCAACGCCCATCTT
CAAAACGGCTTTGGCTACTAAAGTTAGAGGACCTTTATTGACGACCAGTC
TGGCGTCACCAATTTGCGCGACAAGCGGCGTAGGGGCTAGCGTTAATCTC
ACTGCACGTTTGCCTCCTTCGAGACCACGGCAACAGAGGAAAGGCTTTCA
CATCGCGTCCGTGGTGGCCTCAACAGGTGACTCTCAGGTATACACCGCTA
GTATTTCCGATATGAAGCGTTTGCTGAAAGATTCACCAAGTTTTAGACGG
TTCTGTGAAATCGCCCGTCGAGTTCACGAGGCGCGGGTGAGTGGTTGGGA
TGCCCAAGCTTTAGCGGAGCAGCTGAGGAATCAGAGGGAATGGGAAAAGT
ACAAGCGGGAAGTTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig61470:1701..3317-

>mRNA_H-elongata_contig61470.13703.1 ID=mRNA_H-elongata_contig61470.13703.1|Name=mRNA_H-elongata_contig61470.13703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1968bp|location=Sequence derived from alignment at H-elongata_contig61470:1701..3317- (Himanthalia elongata Himel1 dioecious)
ATGGTACATATCGACAAGGTGATAGGCAGCGTTTCATCGGAGGTATGCCA
GATGACGGCCACGTGCACCGACGATAGCATCCTGATTGGTCTAGATGGTA
TGCGACTCAAGGCGATCGCTAGCATCTCAACCAACGCAGAACGCGTGGCA
AAGAAGATGGTACATATCGACAAGGTGATAGGCAGCGTTTCATCGGAGGT
ATGCCAGATGACGGCCACGTGCACCGACGATAGCATCCTGATTGGTCTAG
ATGGTATGCGACTCAAGGCGATCGCTAGCATCTCAACCAACGCAGAACGC
GTGGCAAAGAAGGCATTCCTTAGGGACATCCCAGTAATGTCTGTGCTCAG
CGACAGCGATGTCAACATTATCGAGAAGCTGTTCACTATTTGTACACTGA
GCGAGAACCAAGTGCTCTGTCGAGAGGGGACTCGGGCTGACCATTTGTAC
GTGGTAAAACGCGGGTTCTTCCGCCTCTTAAAGGCGTTTTTACCCAATGA
TACTCCTTTCGCTGGCGATGGCGACAAGGATACGGTATCGAGCGAAAGTC
TGCAGTATGCTGGCGGGAGACGGCTGATGCATTTCGATCTAGGAGAGATC
GGGGCGAAGGAGATGCTGGGCGAGAGCGGTCTGTTTTATCAGGCGGGGGC
TTTTTCAGGGGCCACGGGCACTAGGGGTGGGGCTACAGACCCATCAGAAT
CGACGGGCGGATGCGAGACAGCCCCGTGTCCTCCCCATTCCTCTGCACGG
GCAATCACAAGTAATTCAACAGAAACGAGTAGAGAAACGCAGGCTAATCA
CAACGCAACGCCCATCTTCAAAACGGCTTTGGCTACTAAAGTTAGAGGAC
CTTTATTGACGACCAGTCTGGCGTCACCAATTTGCGCGACAAGCGGCGTA
GGGGCTAGCGCATTCCTTAGGGACATCCCAGTAATGTCTGTGCTCAGCGA
CAGCGATGTCAACATTATCGAGAAGCTGTTCACTATTTGTACACTGAGCG
AGAACCAAGTGCTCTGTCGAGAGGGGACTCGGGCTGACCATTTGTACGTG
GTAAAACGCGGGTTCTTCCGCCTCTTAAAGGCGTTTTTACCCAATGATAC
TCCTTTCGCTGGCGATGGCGACAAGGATACGGTATCGAGCGAAAGTCTGC
AGTATGCTGGCGGGAGACGGCTGATGCATTTCGATCTAGGAGAGATCGGG
GCGAAGGAGATGCTGGGCGAGAGCGGTCTGTTTTATCAGGCGGGGGCTTT
TTCAGGGGCCACGGGCACTAGGGGTGGGGCTACAGACCCATCAGAATCGA
CGGGCGGATGCGAGACAGCCCCGTGTCCTCCCCATTCCTCTGCACGGGCA
ATCACAAGTAATTCAACAGAAACGAGTAGAGAAACGCAGGCTAATCACAA
CGCAACGCCCATCTTCAAAACGGCTTTGGCTACTAAAGTTAGAGGACCTT
TATTGACGACCAGTCTGGCGTCACCAATTTGCGCGACAAGCGGCGTAGGG
GCTAGCAGGAAAGGCTTTCACATCGCGTCCGTGGTGGCCTCAACAGGTGA
CTCTCAGGTATACACCGCTAGTATTTCCGATATGAAGCGTTTGCTGAAAG
ATTCACCAAGTTTTAGACGGTTCTGTGAAATCGCCCGTCGAGTTCACGAG
GCGCGGGTGAGTGGTTGGGATGCCCAAGCTTTAGCGGAGCAGCTGAGGAA
TCAGAGGGAATGGGAAAAGTACAAGCGGGAAGTTGTTAGGAAAGGCTTTC
ACATCGCGTCCGTGGTGGCCTCAACAGGTGACTCTCAGGTATACACCGCT
AGTATTTCCGATATGAAGCGTTTGCTGAAAGATTCACCAAGTTTTAGACG
GTTCTGTGAAATCGCCCGTCGAGTTCACGAGGCGCGGGTGAGTGGTTGGG
ATGCCCAAGCTTTAGCGGAGCAGCTGAGGAATCAGAGGGAATGGGAAAAG
TACAAGCGGGAAGTTGTT
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