mRNA_H-elongata_contig6147.13702.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE) HSP 1 Score: 349 bits (896), Expect = 1.840e-118 Identity = 157/241 (65.15%), Postives = 192/241 (79.67%), Query Frame = 1
Query: 1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHRE-KSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAAS 720
+R T+P HS SW INICP +HK+F EILFHFNPRRRFVAMNNRE N+WGQQEKHM +WP++FNVSI+LAVQID AGFH+A+DGKYC TF R ++P N E+L LQ+MT DDY TNL LVVHEIWWGHK TMPG + ++R ++ WR + +DAFVDLH LP MP+S+ QE+VR RL D+FQP+G IQVRV HRE K+FGF+KFR+HN AAKALEEL E++G+ +RLSKAA+
Sbjct: 75 MRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPPNDEELVLQVMTRDDYDTNLPLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPNSDLQESVRKRLVDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAA 315
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI) HSP 1 Score: 350 bits (897), Expect = 4.800e-116 Identity = 156/241 (64.73%), Postives = 193/241 (80.08%), Query Frame = 1
Query: 1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHRE-KSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAAS 720
+R T+P HS SW INICP +HKDF EILFHFNPRRRFVAMNNRE N+WGQQEKHM +WP++FNVSI++AVQID AGFH+A+DGKYC TF R ++P +GE+L LQ+MT DDY TNL LVVHEIWWGHK TMPG + ++R ++ WR + +DAFVDLH LP MP+S+ +E+VR RL D+FQP+G IQVRV HRE K+FGF+KFR+HN AAKALEEL E++G+ +RLSKAA+
Sbjct: 258 MRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGEELVLQVMTRDDYDTNLRLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPTSDLEESVRKRLIDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAA 498
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A835YJA2_9STRA (Galectin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA2_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.650e-43 Identity = 77/246 (31.30%), Postives = 135/246 (54.88%), Query Frame = 1
Query: 1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRR----FVAMNNREDNVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGED--LTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKAAS 720
+R+TVP S WGI++CP +H DF +L+HFNPR + + N+R D W ++P +F ++ A+QID GFH+ + G Y +F R+ + +D L L++ DDYG L +H+IWWG K+ P + +E ++ + G+ + F +LH+ N+ ++ +R L D+F + V V+V+ + +GF+ F+ GAA+AL+E + ++G+ ++++KA S
Sbjct: 83 LRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLN-EFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSG--IGGGEYETEFRNLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVISG-RGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARS 324
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A7S0GIA8_9STRA (Galectin (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIA8_9STRA) HSP 1 Score: 108 bits (269), Expect = 7.140e-24 Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRF----VAMNNREDNVWGQQEKHMPGPKWPDLFNV-SIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTM 399
I+ PP S+ + INI H+DF ++LFHFNPR+R + +N R+D +WGQ +P P +F S L VQ++ GF + ID K+C R +LP +L LQ + DDYG + V ++WWGHK M
Sbjct: 239 IKFAAPPESERFSINIAGPGHRDFFDVLFHFNPRQRHKGGQLVVNERQDGIWGQGVA-VPLSTLPLIFGQNSCTLTVQVNGGGFDVFIDEKHCARLEHRTQLPPEECNLFLQFPSTDDYGKSENWKVFKVWWGHKDCM 375
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A7S4K6P9_9STRA (Galectin n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6P9_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.220e-23 Identity = 73/242 (30.17%), Postives = 119/242 (49.17%), Query Frame = 1
Query: 1 IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRF----VAMNNREDNVWGQQEKHMPGPKWPDLFNV-SIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPMNGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTMPGRSATKERQSKRASDPWRAGDDDDAFVDLH-----VGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQ-VRVLH-REKSFGFVKFRDHNGAAKALEEL-SEVEIN 687
++ P S+ + +NI H+D+ +ILFHFNPR+R V +N++++ +WG ++P + P +F S+ L +QI G+ + ID K+C R +LP N LTLQ + DDYG G +V+++WWGHK M AT + + + F +H V L + S + + + L F+ +G V V+ S+ FV+ A AL E+ S+ +IN
Sbjct: 264 VKFMAPEDSRRFSLNIAGPGHRDYHDILFHFNPRQREKGGQVVINDKQEGIWGSAV-NVPLSQCPIIFGQPSMTLIIQITGDGYDVFIDNKHCARLEHRTQLPPNKCPLTLQFPSTDDYGNPEGWLVYKVWWGHKAIM----ATGDLSNVAGVN---------MFSSIHPRKLFVSGLSKIHSEPEVDLRKAELERAFRKYGGAHGVSVIAPTNSSYAFVEVESERQADLALREMQSQYKIN 491
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A024GQ01_9STRA (RRM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQ01_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 6.970e-9 Identity = 54/208 (25.96%), Postives = 90/208 (43.27%), Query Frame = 1
Query: 136 NVWGQQEKHMPGPKWPDLFNVSIHLAVQIDEAGFHIAIDGKYCTTFVKRKELPM-NGEDLTLQIMTADDYGTNLGLVVHEIWWGHKQTM--------------PGRSATKERQSKRASDPWRAGDDDDAFVDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKA 714
NV +E P K F + L + + G+ + ++ + R ++P+ GEDL++ I++ D + + VH IWWGH + + PG+ + S R + R +L VGNLP S E+ L+ +F+ G VR+ R GFV R +A+E L+ NGR++++S A
Sbjct: 326 NVDRTKEFSFPLDKDLISFGKAFSLRISVTLEGYVLMVNQVFAGKC--RHQVPIVEGEDLSISILSHDAHEDQQSIAVHRIWWGHTELLSSETNTLSSASSRSPGKQSLDRGDSNRTASGNRTSRHTPHPFELFVGNLPHGTSREE-------LSFLFEYLGYETVRITQRGS--GFVTLRSAEDMDRAVEHLNGKTFNGRILQVSCA 522
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: UPI001D48B651 (RNA-binding protein n=1 Tax=Campylobacter sp. LMG 7974 TaxID=2790656 RepID=UPI001D48B651) HSP 1 Score: 51.2 bits (121), Expect = 3.220e-5 Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1
Query: 481 VDLHVGNLPAMPSSEQQEAVRTRLNDIFQPFG------VIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGRVVRLSKA 714
++++VGNL T L D F PFG +I+ + +R K FGFV+ D A KA+EEL+ EI GRV+R++++
Sbjct: 1 MNIYVGNL-------SYRMTETELKDAFLPFGEVKRAKIIKDKETNRSKGFGFVEM-DDEAALKAIEELNNKEIGGRVLRVNES 76
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Match: A0A1F7JR22_9BACT (RNA-binding protein n=3 Tax=Candidatus Roizmanbacteria TaxID=1752723 RepID=A0A1F7JR22_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 4.570e-5 Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 487 LHVGNLPAMPSSEQQEAVRTRLNDIFQPFGVIQVRVLHREKSFGFVKFRDHNGAAKALEELSEVEINGR--VVRLSKAASSSR 729
L VGNLP +++ + + +I + VI R+ R K FGFV F + A KA+E++SE EI GR VV +++ +SR
Sbjct: 6 LFVGNLPWSLNNDSLREMFAQFGEIVEAI-VITDRMSGRSKGFGFVTFANEESAKKAIEQMSEFEIEGRKLVVNVARPREASR 87 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6147.13702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6147.13702.1 >prot_H-elongata_contig6147.13702.1 ID=prot_H-elongata_contig6147.13702.1|Name=mRNA_H-elongata_contig6147.13702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp IRLTVPPHSQSWGINICPSEHKDFSEILFHFNPRRRFVAMNNREDNVWGQback to top mRNA from alignment at H-elongata_contig6147:9187..11127- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6147.13702.1 ID=mRNA_H-elongata_contig6147.13702.1|Name=mRNA_H-elongata_contig6147.13702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1941bp|location=Sequence derived from alignment at H-elongata_contig6147:9187..11127- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6147:9187..11127- >mRNA_H-elongata_contig6147.13702.1 ID=mRNA_H-elongata_contig6147.13702.1|Name=mRNA_H-elongata_contig6147.13702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig6147:9187..11127- (Himanthalia elongata Himel1 dioecious)back to top |