mRNA_H-elongata_contig61466.13699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61466.13699.1
Unique NamemRNA_H-elongata_contig61466.13699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61466.13699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61466contigH-elongata_contig61466:895..1565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.0154872-CDS-H-elongata_contig61466:894..15631622930992.0154872-CDS-H-elongata_contig61466:894..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61466 895..1563 +
1691679653.646408-CDS-H-elongata_contig61466:894..15631691679653.646408-CDS-H-elongata_contig61466:894..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61466 895..1563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61466.13699.1prot_H-elongata_contig61466.13699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61466 895..1563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61466.13699.1

>prot_H-elongata_contig61466.13699.1 ID=prot_H-elongata_contig61466.13699.1|Name=mRNA_H-elongata_contig61466.13699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
GGGGWAWGDAQGGSAGTGKSTTTEASAVEGEPTEEGGSGEEATGGEGEKL
PLAGGREPGGEGEESEGTGAAIAIPPDVSASGSPVIAQSAGTPAKGGGAS
SAAGSGTVGAGILQEEGGGGPAEQAEGSGKDRGSAWGGEAEAGAEGDGGE
ASSSVQELAEPAGENIETLEVGSVQPAEQGVPGDAEAAEGGWAWRNGGGE
ESVTPEGHETAAIVVPSHSSSGE
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mRNA from alignment at H-elongata_contig61466:895..1565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61466.13699.1 ID=mRNA_H-elongata_contig61466.13699.1|Name=mRNA_H-elongata_contig61466.13699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=671bp|location=Sequence derived from alignment at H-elongata_contig61466:895..1565+ (Himanthalia elongata Himel1 dioecious)
GGCGGGGGTGGCTGGGCCTGGGGCGATGCTCAAGGAGGTTCGGCGGGAAC
TGGGAAGTCGACAACGACGGAAGCCAGTGCAGTTGAAGGCGAGCCTACAG
AAGAAGGTGGGAGCGGGGAAGAAGCGACTGGTGGTGAAGGGGAAAAATTG
CCCTTGGCCGGCGGTAGAGAACCGGGGGGCGAGGGAGAGGAGTCCGAAGG
GACTGGTGCCGCGATTGCCATCCCGCCTGACGTCTCGGCGTCTGGGTCTC
CGGTGATCGCGCAGAGCGCCGGGACTCCTGCGAAAGGTGGCGGCGCCTCA
TCCGCCGCGGGGAGCGGCACAGTTGGCGCCGGAATCCTCCAGGAAGAGGG
AGGTGGTGGACCGGCGGAGCAAGCTGAAGGTTCGGGAAAGGACCGGGGCT
CGGCTTGGGGCGGTGAAGCAGAAGCTGGAGCCGAAGGCGACGGAGGGGAA
GCATCATCCAGTGTTCAGGAGCTGGCCGAACCAGCAGGAGAAAATATTGA
GACGTTGGAAGTGGGTTCCGTCCAGCCCGCAGAACAAGGCGTTCCAGGAG
ACGCGGAGGCTGCGGAGGGAGGCTGGGCCTGGAGGAACGGTGGAGGGGAA
GAATCGGTGACACCCGAGGGACATGAAACGGCGGCGATCGTAGTCCCGAG
TCATTCCTCATCAGGGGAACC
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Coding sequence (CDS) from alignment at H-elongata_contig61466:895..1565+

>mRNA_H-elongata_contig61466.13699.1 ID=mRNA_H-elongata_contig61466.13699.1|Name=mRNA_H-elongata_contig61466.13699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig61466:895..1565+ (Himanthalia elongata Himel1 dioecious)
GGCGGGGGTGGCTGGGCCTGGGGCGATGCTCAAGGAGGTTCGGCGGGAAC
TGGGAAGTCGACAACGACGGAAGCCAGTGCAGTTGAAGGCGAGCCTACAG
AAGAAGGTGGGAGCGGGGAAGAAGCGACTGGTGGTGAAGGGGAAAAATTG
CCCTTGGCCGGCGGTAGAGAACCGGGGGGCGAGGGAGAGGAGTCCGAAGG
GACTGGTGCCGCGATTGCCATCCCGCCTGACGTCTCGGCGTCTGGGTCTC
CGGTGATCGCGCAGAGCGCCGGGACTCCTGCGAAAGGTGGCGGCGCCTCA
TCCGCCGCGGGGAGCGGCACAGTTGGCGCCGGAATCCTCCAGGAAGAGGG
AGGTGGTGGACCGGCGGAGCAAGCTGAAGGTTCGGGAAAGGACCGGGGCT
CGGCTTGGGGCGGTGAAGCAGAAGCTGGAGCCGAAGGCGACGGAGGGGAA
GCATCATCCAGTGTTCAGGAGCTGGCCGAACCAGCAGGAGAAAATATTGA
GACGTTGGAAGTGGGTTCCGTCCAGCCCGCAGAACAAGGCGTTCCAGGAG
ACGCGGAGGCTGCGGAGGGAGGCTGGGCCTGGAGGAACGGTGGAGGGGAA
GAATCGGTGACACCCGAGGGACATGAAACGGCGGCGATCGTAGTCCCGAG
TCATTCCTCATCAGGGGAAGGCGGGGGTGGCTGGGCCTGGGGCGATGCTC
AAGGAGGTTCGGCGGGAACTGGGAAGTCGACAACGACGGAAGCCAGTGCA
GTTGAAGGCGAGCCTACAGAAGAAGGTGGGAGCGGGGAAGAAGCGACTGG
TGGTGAAGGGGAAAAATTGCCCTTGGCCGGCGGTAGAGAACCGGGGGGCG
AGGGAGAGGAGTCCGAAGGGACTGGTGCCGCGATTGCCATCCCGCCTGAC
GTCTCGGCGTCTGGGTCTCCGGTGATCGCGCAGAGCGCCGGGACTCCTGC
GAAAGGTGGCGGCGCCTCATCCGCCGCGGGGAGCGGCACAGTTGGCGCCG
GAATCCTCCAGGAAGAGGGAGGTGGTGGACCGGCGGAGCAAGCTGAAGGT
TCGGGAAAGGACCGGGGCTCGGCTTGGGGCGGTGAAGCAGAAGCTGGAGC
CGAAGGCGACGGAGGGGAAGCATCATCCAGTGTTCAGGAGCTGGCCGAAC
CAGCAGGAGAAAATATTGAGACGTTGGAAGTGGGTTCCGTCCAGCCCGCA
GAACAAGGCGTTCCAGGAGACGCGGAGGCTGCGGAGGGAGGCTGGGCCTG
GAGGAACGGTGGAGGGGAAGAATCGGTGACACCCGAGGGACATGAAACGG
CGGCGATCGTAGTCCCGAGTCATTCCTCATCAGGGGAA
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