mRNA_H-elongata_contig61400.13695.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61400.13695.1
Unique NamemRNA_H-elongata_contig61400.13695.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: D8LLZ5_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 8.020e-28
Identity = 49/77 (63.64%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   10 LQVIDSMDTYFEVLSTNA--DKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            ++VI + + YFEVL  NA  D+IVV+KI+AGFCRACKAFD+K+R L+LD+++ G ++KFFEMDWM TRDLCKSLQ +
Sbjct:  130 VEVISTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQKK 206          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A6H5JEA9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.740e-27
Identity = 50/77 (64.94%), Postives = 66/77 (85.71%), Query Frame = 1
Query:   10 LQVIDSMDTYFEVLSTNA--DKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            ++VID+ + YFEVL  NA  D+IVV+KI+AGFCRACKAFD+K+R L+LD+++ G ++KFFEMDWM TRDLCKSLQ +
Sbjct:  403 VEVIDTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQKK 479          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A2V3IJC0_9FLOR (Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC0_9FLOR)

HSP 1 Score: 58.5 bits (140), Expect = 9.580e-9
Identity = 25/74 (33.78%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   10 LQVIDSMDTYFEVLSTNADKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQV 231
            +Q+I  ++ Y +VL  ++D +VV+K+FA +CR+C+A   K    A ++    ++++FF+MD+   ++LC  L V
Sbjct:   63 VQLIHGVEQYLQVLRESSDSLVVLKVFAPWCRSCRALTPKVNRFAREF----SNVRFFKMDYEQNKELCHRLGV 132          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A836C9F2_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.360e-8
Identity = 23/63 (36.51%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   46 VLSTNADKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            V +++ D++V++K +  +CRACKAFD KYR L L+ E+      F+E+D    +D+ + L ++
Sbjct:    8 VEASHGDRLVIIKAYVPWCRACKAFDLKYRRLGLELEQQDAPASFYEIDVFAVKDVKQLLDIK 70          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.810e-8
Identity = 24/69 (34.78%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   31 DTYFEVLSTNA-DKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            DT+   +S +A DK+V +K +AG+CRACK    ++  LA ++   G +  F+E+++   +DLC+ L ++
Sbjct:  119 DTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLAKEF---GEEAAFYEIEFSANKDLCRRLDIK 184          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.390e-7
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   10 LQVIDSMDTYFEVLSTNADKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQV 231
            +Q IDS D Y   ++ + DK+VV+K +  FCRAC     +Y  L+    +   D  FF++++   +DLCK L +
Sbjct:   79 VQAIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEE--DAVFFDVEFSGAKDLCKQLGI 150          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 2.250e-7
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 RRLQVIDSMDTYFEVL--STNADKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            R +  ID  D Y  ++  +T  +++VV+K FA +CRACKA   K+  +A D+     D++F E+ + + + LCKSL ++
Sbjct:   53 RDILPIDDTDAYEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWP----DVEFHEIMFDNNKKLCKSLGIK 127          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 53.1 bits (126), Expect = 2.590e-7
Identity = 20/57 (35.09%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   64 DKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            D++V VK +A +CRACK+   ++  LA ++  AG +++FFE+++   ++LC+ L ++
Sbjct:   20 DRLVAVKFYASWCRACKSIAPRFERLAKEF--AGDEVQFFEIEFAANKELCRRLNIK 74          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A7S4C0Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Q1_CHRCT)

HSP 1 Score: 50.1 bits (118), Expect = 1.750e-5
Identity = 21/57 (36.84%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   64 DKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQVR 234
            +++VV+K++A +CRACKA   KY+ +A D+     D++F ++ + + ++LCKSL ++
Sbjct:   84 NQVVVIKVYASWCRACKAMAPKYQRIAEDWP----DVEFCDILFDNNKNLCKSLGIK 136          
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Match: A0A1E7ETY9_9STRA (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETY9_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.100e-5
Identity = 19/62 (30.65%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   46 VLSTNADKIVVVKIFAGFCRACKAFDKKYRALALDYEKAGTDIKFFEMDWMHTRDLCKSLQV 231
            +L+ N DK++++K+FA +C+ACK    K++AL  D +     + +  ++  + +D  KS+ V
Sbjct:    1 LLTANPDKLIILKVFAPWCKACKGLAPKFQALTRDEKYKNLPMVWASLNIQNNKDFVKSIGV 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61400.13695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LLZ5_ECTSI8.020e-2863.64Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEA9_9PHAE2.740e-2764.94Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A2V3IJC0_9FLOR9.580e-933.78Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracil... [more]
A0A836C9F2_9STRA1.360e-836.51Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A7S4A7N2_9STRA7.810e-834.78Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6H5K275_9PHAE1.390e-735.14Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3ATR9_9EUKA2.250e-735.44Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
F0YB20_AURAN2.590e-735.09Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S4C0Q1_CHRCT1.750e-536.84Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1E7ETY9_9STRA3.100e-530.65Thioredoxin domain-containing protein (Fragment) n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61400contigH-elongata_contig61400:101..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7.8e-22
Seed eggNOG ortholog2880.D8LLZ5
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_002240.2
Exons1
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.5447893-CDS-H-elongata_contig61400:100..3341622930991.5447893-CDS-H-elongata_contig61400:100..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61400 101..334 -
1691679653.4320688-CDS-H-elongata_contig61400:100..3341691679653.4320688-CDS-H-elongata_contig61400:100..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61400 101..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61400.13695.1prot_H-elongata_contig61400.13695.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61400 101..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61400.13695.1

>prot_H-elongata_contig61400.13695.1 ID=prot_H-elongata_contig61400.13695.1|Name=mRNA_H-elongata_contig61400.13695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MRRLQVIDSMDTYFEVLSTNADKIVVVKIFAGFCRACKAFDKKYRALALD
YEKAGTDIKFFEMDWMHTRDLCKSLQVR
back to top

mRNA from alignment at H-elongata_contig61400:101..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61400.13695.1 ID=mRNA_H-elongata_contig61400.13695.1|Name=mRNA_H-elongata_contig61400.13695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig61400:101..334- (Himanthalia elongata Himel1 dioecious)
ATGAGACGCCTACAGGTAATTGATAGCATGGACACCTATTTTGAGGTGCT CTCGACCAACGCTGACAAGATCGTGGTGGTGAAGATATTCGCGGGATTTT GCAGGGCTTGCAAGGCGTTCGATAAAAAGTACAGGGCGCTTGCGCTAGAT TACGAGAAGGCGGGGACGGATATCAAGTTCTTCGAGATGGACTGGATGCA TACTAGAGATCTGTGCAAGTCTTTGCAGGTAAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61400:101..334-

>mRNA_H-elongata_contig61400.13695.1 ID=mRNA_H-elongata_contig61400.13695.1|Name=mRNA_H-elongata_contig61400.13695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig61400:101..334- (Himanthalia elongata Himel1 dioecious)
ATGAGACGCCTACAGGTAATTGATAGCATGGACACCTATTTTGAGGTGCT
CTCGACCAACGCTGACAAGATCGTGGTGGTGAAGATATTCGCGGGATTTT
GCAGGGCTTGCAAGGCGTTCGATAAAAAGTACAGGGCGCTTGCGCTAGAT
TACGAGAAGGCGGGGACGGATATCAAGTTCTTCGAGATGGACTGGATGCA
TACTAGAGATCTGTGCAAGTCTTTGCAGGTAAGGATGAGACGCCTACAGG
TAATTGATAGCATGGACACCTATTTTGAGGTGCTCTCGACCAACGCTGAC
AAGATCGTGGTGGTGAAGATATTCGCGGGATTTTGCAGGGCTTGCAAGGC
GTTCGATAAAAAGTACAGGGCGCTTGCGCTAGATTACGAGAAGGCGGGGA
CGGATATCAAGTTCTTCGAGATGGACTGGATGCATACTAGAGATCTGTGC
AAGTCTTTGCAGGTAAGG
back to top