mRNA_H-elongata_contig61392.13693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61392.13693.1
Unique NamemRNA_H-elongata_contig61392.13693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A6H5JCV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 8.890e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:   94 VEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            V VA LMKP+DLGHHVLTIVLQLAHDDEQ+ELRMTAAALLNDLA++LG DLCKQFVTPEMESLSE
Sbjct:  129 VGVANLMKPIDLGHHVLTIVLQLAHDDEQEELRMTAAALLNDLADALGYDLCKQFVTPEMESLSE 193
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.150e-28
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:   94 VEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            V VA LMKP+DLGHHVLTIVLQLAHDDEQ+ELRMTAAALLNDLA++LG DLCKQFVTPEMESLSE
Sbjct:  129 VGVANLMKPIDLGHHVLTIVLQLAHDDEQEELRMTAAALLNDLADALGYDLCKQFVTPEMESLSE 193
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A7S1CBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBG0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.260e-26
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:   22 VLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            +LP L KL+ DPQ EVR AAGESLV +A+ +K  DLG  VLTI+L LAHDDEQ++LRMTAA LLN+LAE LG +L  QFVTPE+  LSE
Sbjct:  103 LLPQLKKLVADPQPEVRLAAGESLVSIASHVKQDDLGPRVLTIMLGLAHDDEQEDLRMTAAVLLNELAEKLGQELVVQFVTPEVICLSE 191
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A812JPX5_9DINO (Ppp4r1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JPX5_9DINO)

HSP 1 Score: 106 bits (264), Expect = 6.500e-26
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 FNVTAQIVLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLS 285
            +++  + VL +LA+L+ D Q EVR AAGESLV VAA++KP DLG  +LTIV+ LAH+DE +++RMTAA LLN+LA SLG +LC+QFV  E+E L+
Sbjct:  114 YSLIVERVLRSLARLVVDIQPEVRIAAGESLVTVAAMLKPADLGARLLTIVVHLAHNDEAEDMRMTAAVLLNELAVSLGPELCEQFVCSELEHLA 208
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A812TWQ6_9DINO (PPP4R1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TWQ6_9DINO)

HSP 1 Score: 109 bits (273), Expect = 8.470e-26
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:   22 VLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            VLP LA L+ D Q EVR AAGE+LV VA  ++  DLG  VLTIVL+LAHDDEQ++LRMTAA LLN+LAE LG DLC QFV PE+ SL+E
Sbjct:  122 VLPQLALLVADTQPEVRIAAGETLVGVAKWVRGSDLGARVLTIVLRLAHDDEQEDLRMTAAVLLNELAEVLGPDLCHQFVAPEIISLAE 210
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A7S2WL63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL63_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.800e-25
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   64 EVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            EVRQA+ E+LV+VA L++  DLG HVLT VLQLAHDDE+++LRM AA LLN+LA  LGNDLC+QF+ PE+ SLSE
Sbjct:    3 EVRQASSEALVQVAKLLRAPDLGRHVLTRVLQLAHDDEREDLRMNAAWLLNELAPHLGNDLCRQFLVPEIVSLSE 77
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: F0WZ27_9STRA (Uncharacterized protein AlNc14C408G11436 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZ27_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.980e-25
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 FNVTAQIVLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            + +   + +P ++KL+ DPQ EVR AAG+SLVE+AA+++  D G H+LTIVL LAHDD+ +  R +AA L N+LA+ LG DLC+QF  PE+ SLSE
Sbjct:  126 YRILLDVFIPLISKLMSDPQYEVRSAAGDSLVEMAAMIQQEDQGQHILTIVLPLAHDDDNEHYRTSAALLYNNLAQHLGPDLCQQFCVPELISLSE 221
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A024GR60_9STRA (Casein kinase I n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR60_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.050e-24
Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 FNVTAQIVLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSE 288
            + +   + +P ++KL+ DPQ EVR AAG+SLVE+AA+++  D G H+LTIVL LAHDD+ +  R +AA L N+LA  LG DLC+QF  PE+ SLSE
Sbjct:  148 YRILLDVFIPLISKLMSDPQYEVRSAAGDSLVEMAAMIQQDDQGQHILTIVLPLAHDDDNEHYRTSAALLYNNLARHLGPDLCQQFCVPELISLSE 243
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BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A5A8CWR3_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWR3_CAFRO)

HSP 1 Score: 106 bits (264), Expect = 1.410e-24
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 FNVTAQIVLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLS 285
            +++  + VL +LA+L+ D Q EVR AAGESLV VAA++KP DLG  +LTIV+ LAH+DE +++RMTAA LLN+LA SLG +LC+QFV  E+E L+
Sbjct:  107 YSLIVERVLRSLARLVVDIQPEVRIAAGESLVTVAAMLKPADLGARLLTIVVHLAHNDEAEDMRMTAAVLLNELAVSLGPELCEQFVCSELEHLA 201
[Close]
BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Match: A0A5A8DGB8_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGB8_CAFRO)

HSP 1 Score: 106 bits (264), Expect = 1.440e-24
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 FNVTAQIVLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTIVLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLS 285
            +++  + VL +LA+L+ D Q EVR AAGESLV VAA++KP DLG  +LTIV+ LAH+DE +++RMTAA LLN+LA SLG +LC+QFV  E+E L+
Sbjct:   85 YSLIVERVLRSLARLVVDIQPEVRIAAGESLVTVAAMLKPADLGARLLTIVVHLAHNDEAEDMRMTAAVLLNELAVSLGPELCEQFVCSELEHLA 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61392.13693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCV5_9PHAE8.890e-2989.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC4_ECTSI7.150e-2889.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CBG0_9STRA6.260e-2666.29Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812JPX5_9DINO6.500e-2657.89Ppp4r1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A812TWQ6_9DINO8.470e-2667.42PPP4R1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S2WL63_9STRA1.800e-2568.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0WZ27_9STRA3.980e-2553.13Uncharacterized protein AlNc14C408G11436 n=1 Tax=A... [more]
A0A024GR60_9STRA1.050e-2453.13Casein kinase I n=1 Tax=Albugo candida TaxID=65357... [more]
A0A5A8CWR3_CAFRO1.410e-2457.89Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8DGB8_CAFRO1.440e-2457.89Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61392contigH-elongata_contig61392:422..2188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930991.4367936-CDS-H-elongata_contig61392:421..5441622930991.4367936-CDS-H-elongata_contig61392:421..544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61392 422..544 -
1691679653.4004886-CDS-H-elongata_contig61392:421..5441691679653.4004886-CDS-H-elongata_contig61392:421..544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61392 422..544 -
1622930991.4495585-CDS-H-elongata_contig61392:2008..21881622930991.4495585-CDS-H-elongata_contig61392:2008..2188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61392 2009..2188 -
1691679653.412308-CDS-H-elongata_contig61392:2008..21881691679653.412308-CDS-H-elongata_contig61392:2008..2188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61392 2009..2188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61392.13693.1prot_H-elongata_contig61392.13693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61392 422..2188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61392.13693.1

>prot_H-elongata_contig61392.13693.1 ID=prot_H-elongata_contig61392.13693.1|Name=mRNA_H-elongata_contig61392.13693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
FNVTAQIVLPTLAKLLGDPQAEVRQAAGESLVEVAALMKPLDLGHHVLTI
VLQLAHDDEQDELRMTAAALLNDLAESLGNDLCKQFVTPEMESLSEVCTM
*
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mRNA from alignment at H-elongata_contig61392:422..2188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61392.13693.1 ID=mRNA_H-elongata_contig61392.13693.1|Name=mRNA_H-elongata_contig61392.13693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1767bp|location=Sequence derived from alignment at H-elongata_contig61392:422..2188- (Himanthalia elongata Himel1 dioecious)
TTCAATGTCACGGCGCAGATCGTGCTACCCACGCTGGCCAAGCTCTTGGG
AGATCCTCAGGCCGAGGTGAGGCAGGCGGCAGGAGAAAGCTTGGTGGAGG
TGGCTGCTCTGATGAAGCCCCTCGACCTCGGGCACCACGTACTGACCATC
GTGCTGCAGCTGGCGCACGATGACGAGCAGGTACGCGCGCCTTCTTTGTT
GTTGTACCCAAATGGCATCGGTTTTGGTATAACGGTGAAGGATAATATAA
AAATGAAACCCCGGGGATTAAGTGCCCTCATCCCCTCCCTTACGATGAAG
AAAATCGAGGAATAGATCAATGAAGAGGAAATCAACACTTGGGGAAAATT
GTGTGTAGGTTATGGGGGGGGGGGGGGAAACGAAAAACGAAAAAAACGCG
ACGAACTTAAACTTTGTAAAATATTGGGGGGAGGAAAGTGTGTTGCTGAT
GTTTGAAATAGAGAACGTTTTGGCGAGATGTCCCTATTAGTGTCTATCGA
GTCCTTCGTCTCGACAGCGTCTATAATAGATAATAGACTTGTTGTTCTTG
CTATGCTCGAGCGGAAAGCACTCATGGCTCTATCACCCGTTGCTTTTGTA
TTGTTCTTTGATGGTATTGGATCGCCACACGGGGTTTCATTCCGATATCG
GGTGCGTGTCTGGGGTGGGGGATCGGGGGTATTAAAGTTTTTCATCCCTT
GGCTGTTGGACCATTGACTACGCGTCCTCGGGGGGAAAGAATGGACAATT
GTTTGGTTACTATTTATTCATTTTTAGTTAGCTGACATTTGCGTGGACAA
GACTTCGGTCCGTGGTATTTTGCATGTCAACATGGATCAAGTCCCCTTAC
CGAATCATCCCTATTCCGAGCTGCGTTTGGGGGGCGTGAACGAACAAAAA
AGGCGTGTTTTGGCAGGGGAAGAATGCGGTGAAGAATAGATCTGCGCCGG
AATCCTTTCATTATGGTGTGTATAATGTACTTACTATTATATCTTACTAT
TTATGTAGAAAGAGTGAGAGAGGTCGTCGTGAATCTTTACGGTGGGCCAG
GGCATCTGTTTTTCTGACGAGGGGTTTTCTAGTGACAGACCGGAGTGTTT
AGCCCATCGCAGAATCGTCGCCGGGGAGGGGTTGTGTGTATACTGTATCC
TCTTTCCTTGCTGAACAGCAGTATTCTTAACTAGATGTGCAGTCTAGTGC
CAGGCTGCTGATTTAGCCCCCATCGCTGCCTAGTGTTTTGTTTTTCCAGT
TTTGGAGGTTGTAATGAGGCATGCTTGCGCAGAACAACAGGTTTCTCCAT
CGCAACACCAGCGCCGATTTTTTATTTAGGGTAGAGCGGGGAGTGTCGGG
TTGAGCCTTGCGCAGTGTTGTGATACTTCTTACCACCACCGCGGGAGGAA
GGACAGGAAAGGGAGTTCCGCCAGTGTTGGCGTGTTTTTTGTCGCTACAG
TACGGTGCGTCTTAGATCGCGGTCATGGTTGTTAGAAATTTATGTCTTGT
ATGTGTGTGTTTTGTGTCTTTGGGAGGTCATGAGACTGTCGATTTTGTCC
ATCACATATGCCTCTTTCTGTATCATGTCCGTCATCCCTCCCCCCATCCC
CCCCTCCCCCCCCCCCTCACCTCGTCACACCGTCTGGGTCGCAGGATGAG
TTGCGAATGACGGCCGCGGCGTTACTGAACGATCTGGCGGAATCGCTGGG
TAACGACCTCTGCAAGCAGTTCGTGACTCCAGAGATGGAGTCCCTATCGG
AGGTATGCACCATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig61392:422..2188-

>mRNA_H-elongata_contig61392.13693.1 ID=mRNA_H-elongata_contig61392.13693.1|Name=mRNA_H-elongata_contig61392.13693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig61392:422..2188- (Himanthalia elongata Himel1 dioecious)
TTCAATGTCACGGCGCAGATCGTGCTACCCACGCTGGCCAAGCTCTTGGG
AGATCCTCAGGCCGAGGTGAGGCAGGCGGCAGGAGAAAGCTTGGTGGAGG
TGGCTGCTCTGATGAAGCCCCTCGACCTCGGGCACCACGTACTGACCATC
GTGCTGCAGCTGGCGCACGATGACGAGCAGTTCAATGTCACGGCGCAGAT
CGTGCTACCCACGCTGGCCAAGCTCTTGGGAGATCCTCAGGCCGAGGTGA
GGCAGGCGGCAGGAGAAAGCTTGGTGGAGGTGGCTGCTCTGATGAAGCCC
CTCGACCTCGGGCACCACGTACTGACCATCGTGCTGCAGCTGGCGCACGA
TGACGAGCAGGATGAGTTGCGAATGACGGCCGCGGCGTTACTGAACGATC
TGGCGGAATCGCTGGGTAACGACCTCTGCAAGCAGTTCGTGACTCCAGAG
ATGGAGTCCCTATCGGAGGTATGCACCATGTAGGATGAGTTGCGAATGAC
GGCCGCGGCGTTACTGAACGATCTGGCGGAATCGCTGGGTAACGACCTCT
GCAAGCAGTTCGTGACTCCAGAGATGGAGTCCCTATCGGAGGTATGCACC
ATGTAG
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