mRNA_H-elongata_contig61329.13685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61329.13685.1
Unique NamemRNA_H-elongata_contig61329.13685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: D8LCZ1_ECTSI (Serine O-acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ1_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 3.130e-135
Identity = 190/218 (87.16%), Postives = 207/218 (94.95%), Query Frame = 1
Query:    1 AVRCPLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            AVRCPLW +VQ+EAR MM++EPALARYFRMTLLTY TMERALAYHLACK+GNDSVSMETWDELLADVLEAH   LG FFR DLVAIL RDPAAEGPAHAFLNFKG+LGL+ASRI HVLWKE+R++LAL+IQSRVSEVFGMDIHPGC++G GVMIDHATGVVFGETAVVG++CTFLHGVTLGGTGK+RGDRHPKLGCGILVGAGSMILGNI+VGDGCKV
Sbjct:   20 AVRCPLWRQVQEEARNMMKDEPALARYFRMTLLTYDTMERALAYHLACKLGNDSVSMETWDELLADVLEAHTDHLGVFFRTDLVAILTRDPAAEGPAHAFLNFKGYLGLQASRIGHVLWKEDRKSLALAIQSRVSEVFGMDIHPGCQVGAGVMIDHATGVVFGETAVVGDNCTFLHGVTLGGTGKSRGDRHPKLGCGILVGAGSMILGNISVGDGCKV 237          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A835Z6L2_9STRA (Serine O-acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6L2_9STRA)

HSP 1 Score: 285 bits (729), Expect = 4.960e-93
Identity = 139/207 (67.15%), Postives = 167/207 (80.68%), Query Frame = 1
Query:   37 EARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVL-EAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            E + M  EEPAL RY+R T+L Y +++ AL +HL+ K+ NDSV    W +LL  VL E   G L E  RADL AI+ RDPA EG AHA LN+KG+LGL+ASR+AH LW   RR+LAL+IQSRVSE+FGMDIHP C++G+GVMIDHATGVVFGETAV+G+DCT LHGVTLGGTGK RGDRHPKLGCGIL+GAG++ILGNI +GDGCK+
Sbjct:    4 EVQDMAAEEPALRRYYRNTILQYDSLDCALVHHLSNKLANDSVGSGEWYKLLEGVLREPCGGKLVELMRADLQAIMTRDPACEGAAHALLNYKGYLGLQASRVAHELWLRKRRSLALAIQSRVSEIFGMDIHPACRIGRGVMIDHATGVVFGETAVIGDDCTILHGVTLGGTGKDRGDRHPKLGCGILIGAGALILGNIRIGDGCKI 210          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A388LGG8_CHABU (Serine O-acetyltransferase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LGG8_CHABU)

HSP 1 Score: 222 bits (565), Expect = 2.130e-69
Identity = 113/215 (52.56%), Postives = 153/215 (71.16%), Query Frame = 1
Query:   16 LWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDR--HPKLGCGILVGAGSMILGNITVGDGCKV 654
            +W ++++EAR     EP LA +   T++ + ++ERALA+HLA K+ + ++       L+ ++ + +   +G+  RADLVA   RDPA E   H FLN+KGFL +EA R+AH LWK  RR+LAL+IQSRVSEVFG+D HPG  LG+GV +DHATGVV GETAV+GN+ T LH VTLGGTGK  GDR  HPK+   +L+GAG+ +LGNI VG+G K+
Sbjct:    7 IWEQIRKEARTESEAEPVLASFLYSTIIVHRSLERALAFHLAGKMSSATLLCTQLFTLMTEIYQ-NDRFIGDAIRADLVAFRQRDPACETYLHVFLNYKGFLAVEAHRVAHSLWKSGRRSLALAIQSRVSEVFGVDFHPGATLGRGVFLDHATGVVVGETAVIGNNVTILHHVTLGGTGKQTGDRDRHPKIRDNVLIGAGAQVLGNIVVGEGTKI 220          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A2E5BRU8_9HYPH (Serine acetyltransferase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BRU8_9HYPH)

HSP 1 Score: 221 bits (564), Expect = 4.120e-69
Identity = 110/214 (51.40%), Postives = 150/214 (70.09%), Query Frame = 1
Query:   13 PLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            P+W R+++EA+ M   EP  A +   T+L +  +E  L++HLA K+ +  VS     E+  D  EA    +  F RAD +A+ DRDPA +      L FKGF  ++A RIAH LW E+R+A+AL IQSRVSE++G+DIHP  ++GK +M+DHATGVV GETAV+G+D + LHGVTLGGTGKT GDRHPK+G G+L+GA S ++GNIT+GD  +V
Sbjct:   13 PVWDRMRREAKDMAASEPVXASFIFATVLNHDRLEEVLSFHLARKLSSAEVSXMVLREVFEDAFEADPSIIXAF-RADTMAVFDRDPACDAYLQPLLFFKGFNSIQAHRIAHWLWNEDRKAMALFIQSRVSELYGVDIHPAARIGKAIMMDHATGVVVGETAVIGDDVSMLHGVTLGGTGKTNGDRHPKVGRGVLLGADSKVIGNITIGDCARV 225          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A846N3D6_9PROT (Serine acetyltransferase n=1 Tax=Rhizomicrobium palustre TaxID=189966 RepID=A0A846N3D6_9PROT)

HSP 1 Score: 220 bits (561), Expect = 9.730e-69
Identity = 110/214 (51.40%), Postives = 148/214 (69.16%), Query Frame = 1
Query:   13 PLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            P+W  +++EA ++   EPALA +   T+L +  +E AL+YHLA K+GN+ +S     E+  + L A   ++G   RADL A+ +RDPA    A AFL +KGF  LE  RI H LW + R  ++L  QSR+SE F +DIHP  KLG+G+MIDHATGVV GETAVVG+D + LHGVTLGGTGK  GDRHPK+G G+L+  G+ +LGNITVG+  ++
Sbjct:   13 PIWSALRKEAEELATREPALASFIHATILKHDRLESALSYHLAKKVGNEDISPMLAREIFDEALNADP-EIGAAVRADLSAVFERDPACHSYAEAFLYYKGFHALECYRIGHWLWTQKREGMSLFFQSRISERFDVDIHPAAKLGRGIMIDHATGVVIGETAVVGDDVSMLHGVTLGGTGKETGDRHPKIGRGVLLSMGAKVLGNITVGEYSRI 225          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A218XAH8_PUNGR (Serine O-acetyltransferase n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218XAH8_PUNGR)

HSP 1 Score: 223 bits (567), Expect = 1.140e-68
Identity = 111/205 (54.15%), Postives = 150/205 (73.17%), Query Frame = 1
Query:   16 LWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNI 630
            LW ++++EA  +  +EP L+ Y+R ++L++  ME ALA HL+ K+ + S+  ET  +L   V      ++ E  +ADL A+ +RDPA  G  H FL+FKGFL  +A R+AH LW + RRALAL IQSRVSEVF +DIHPG ++G+G+++DHATGVV GETAV+GND + LH VTLGGTGK  GDRHPK+G G+L+GAG+ ILGNI
Sbjct:   82 LWEKMREEAELVSSQEPVLSSYYRNSILSHDLMESALASHLSIKLSDSSLCSETLYDLFKAVF-VDDPEIVEAVKADLRAVKERDPACIGYVHCFLSFKGFLACQAHRVAHRLWSQGRRALALVIQSRVSEVFAVDIHPGARIGRGILLDHATGVVVGETAVIGNDVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNI 285          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: UPI00141D99B6 (serine O-acetyltransferase n=1 Tax=Rhizomicrobium electricum TaxID=480070 RepID=UPI00141D99B6)

HSP 1 Score: 220 bits (560), Expect = 1.470e-68
Identity = 110/214 (51.40%), Postives = 148/214 (69.16%), Query Frame = 1
Query:   13 PLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            P+W  ++Q+A Q+   EPALA +   T+L +  +E AL+YHLA K+G+D +S     E+    L A  G +G+  RADL A+ +RDPA      AFL +KGF  L+  RI+H LW   R  +AL  QSR+SE+F +DIHP  +LG+G+MIDHATGVV GETAVVG+D + LHGVTLGGTGK  GDRHPK+G G+L+  G+ +LGNITVG+  ++
Sbjct:   13 PIWTALRQQAEQLATREPALASFVHATILNHARLEDALSYHLAKKVGDDDISPMQAREIFDQALTADPG-IGQAVRADLSAVFERDPACHSYVEAFLYYKGFHSLQCYRISHWLWTVGREGMALFFQSRISELFDVDIHPAAQLGRGIMIDHATGVVIGETAVVGDDVSMLHGVTLGGTGKETGDRHPKIGRGVLLSMGAKVLGNITVGEYSRI 225          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A2A5ETR0_9HYPH (Serine acetyltransferase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ETR0_9HYPH)

HSP 1 Score: 220 bits (560), Expect = 1.660e-68
Identity = 113/214 (52.80%), Postives = 148/214 (69.16%), Query Frame = 1
Query:   13 PLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            P+W R+++EA +M   EP LA     T+L + ++E  L++HLA K+ N  V+     E+  D  EA  G + + FRAD+VA+ DRDPA +      L FKGF  L+A R+AH LW +NRR +AL IQSRVSE+F +DIHP  K GK +M+DH TGVV GETAVVG+D + LHGV LGGTGK  GDRHPK+G G+L+GA S ILGNIT+G+  +V
Sbjct:   13 PVWDRMRREASEMAAHEPVLASSIFATILNHDSLEEVLSFHLARKLANVEVTAMGLREVFEDAYEAEPGII-DAFRADIVAVFDRDPACDSYLQPLLFFKGFNSLQAHRLAHWLWGQNRRPMALFIQSRVSELFAVDIHPAAKFGKAIMMDHGTGVVIGETAVVGDDVSLLHGVNLGGTGKETGDRHPKVGRGVLLGADSKILGNITIGECARV 225          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A081BDF3_9HYPH (Serine acetyltransferase n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BDF3_9HYPH)

HSP 1 Score: 219 bits (559), Expect = 2.280e-68
Identity = 110/214 (51.40%), Postives = 149/214 (69.63%), Query Frame = 1
Query:   13 PLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            P+W R+Q+EAR+M   EP LA Y   T+L + + +  L++H+A K+ ++ VS     E+  DVL+A+  D+    RAD+ A+ DRDPA        L FKGF  ++A R AH LW   R+A+AL IQSRVSE+F +DIHP  + G+G+M+DHATGVV GETAVVG+D + LHGV LGGTGK  GDRHPK+G G+L+GA + ILGN+T+GD  +V
Sbjct:   13 PIWQRLQEEAREMAASEPVLASYIYGTVLNHDSFDEMLSFHVARKLSSEEVSAMVLREVFEDVLKANP-DIAAACRADMSAVFDRDPACHAYIQPLLFFKGFNAIQAHRFAHELWTGGRKAMALFIQSRVSELFAVDIHPAARFGRGIMMDHATGVVIGETAVVGDDVSMLHGVNLGGTGKESGDRHPKVGNGVLLGADAKILGNLTIGDCARV 225          
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Match: A0A1S4AZN3_TOBAC (Serine O-acetyltransferase n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4AZN3_TOBAC)

HSP 1 Score: 223 bits (567), Expect = 5.020e-68
Identity = 109/213 (51.17%), Postives = 154/213 (72.30%), Query Frame = 1
Query:   16 LWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKIGNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAFLNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGKGVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILVGAGSMILGNITVGDGCKV 654
            LW ++Q+EAR  + +EP L+ Y++ ++L + ++E ALA HL+ K+ N S+S ET  +L   VL     +L     ADL+A+ +RDPA     H FLNFKGFL  +A RIAH LW + R+ LAL IQ+RV EVF +DIHPG ++G+G+++DHATGVV GETA++GN+ + LH VTLGGTGK  GDRHPK+G G+L+GAG+ +LGN+ + +G K+
Sbjct:  131 LWLKMQKEARLDIEQEPLLSNYYKNSILVHDSIESALANHLSIKLSNSSISSETLYDLFMGVLTEDQ-ELIFDVNADLIAVKERDPACISYIHCFLNFKGFLACQAHRIAHKLWSKRRKILALVIQNRVCEVFAVDIHPGARIGRGILLDHATGVVIGETAIIGNNVSILHNVTLGGTGKMCGDRHPKIGDGVLIGAGTCVLGNVRIENGAKI 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61329.13685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCZ1_ECTSI3.130e-13587.16Serine O-acetyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z6L2_9STRA4.960e-9367.15Serine O-acetyltransferase n=1 Tax=Tribonema minus... [more]
A0A388LGG8_CHABU2.130e-6952.56Serine O-acetyltransferase n=1 Tax=Chara braunii T... [more]
A0A2E5BRU8_9HYPH4.120e-6951.40Serine acetyltransferase n=1 Tax=Rhodobiaceae bact... [more]
A0A846N3D6_9PROT9.730e-6951.40Serine acetyltransferase n=1 Tax=Rhizomicrobium pa... [more]
A0A218XAH8_PUNGR1.140e-6854.15Serine O-acetyltransferase n=2 Tax=Punica granatum... [more]
UPI00141D99B61.470e-6851.40serine O-acetyltransferase n=1 Tax=Rhizomicrobium ... [more]
A0A2A5ETR0_9HYPH1.660e-6852.80Serine acetyltransferase n=1 Tax=Rhodobiaceae bact... [more]
A0A081BDF3_9HYPH2.280e-6851.40Serine acetyltransferase n=1 Tax=Tepidicaulis mari... [more]
A0A1S4AZN3_TOBAC5.020e-6851.17Serine O-acetyltransferase n=5 Tax=Nicotiana TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61329contigH-elongata_contig61329:128..2034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score234.6
Seed ortholog evalue4.5e-59
Seed eggNOG ortholog4006.Lus10016603
KEGG rclassRC00004,RC00041
KEGG koko:K00640
KEGG ReactionR00586
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111
KEGG ModuleM00021
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006790,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008270,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009266,GO:0009267,GO:0009409,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009970,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Serine acetyltransferase
EggNOG OGs37RU1@33090,3G77V@35493,4JG9R@91835,COG0110@1,KOG4750@2759
EC2.3.1.30
COG Functional cat.E
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine O-acetyltransferase, incomplete
Ec32 orthologEc-01_001610.1
Exons3
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61329.13685.1prot_H-elongata_contig61329.13685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61329 128..2034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.9951012-CDS-H-elongata_contig61329:127..4701622930989.9951012-CDS-H-elongata_contig61329:127..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61329 128..470 -
1691679652.8213248-CDS-H-elongata_contig61329:127..4701691679652.8213248-CDS-H-elongata_contig61329:127..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61329 128..470 -
1622930990.015341-CDS-H-elongata_contig61329:1008..12681622930990.015341-CDS-H-elongata_contig61329:1008..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61329 1009..1268 -
1691679652.8402975-CDS-H-elongata_contig61329:1008..12681691679652.8402975-CDS-H-elongata_contig61329:1008..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61329 1009..1268 -
1622930990.0382838-CDS-H-elongata_contig61329:1983..20341622930990.0382838-CDS-H-elongata_contig61329:1983..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61329 1984..2034 -
1691679652.8575504-CDS-H-elongata_contig61329:1983..20341691679652.8575504-CDS-H-elongata_contig61329:1983..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61329 1984..2034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61329.13685.1

>prot_H-elongata_contig61329.13685.1 ID=prot_H-elongata_contig61329.13685.1|Name=mRNA_H-elongata_contig61329.13685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
AVRCPLWHRVQQEARQMMREEPALARYFRMTLLTYGTMERALAYHLACKI
GNDSVSMETWDELLADVLEAHAGDLGEFFRADLVAILDRDPAAEGPAHAF
LNFKGFLGLEASRIAHVLWKENRRALALSIQSRVSEVFGMDIHPGCKLGK
GVMIDHATGVVFGETAVVGNDCTFLHGVTLGGTGKTRGDRHPKLGCGILV
GAGSMILGNITVGDGCKV
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mRNA from alignment at H-elongata_contig61329:128..2034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61329.13685.1 ID=mRNA_H-elongata_contig61329.13685.1|Name=mRNA_H-elongata_contig61329.13685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1907bp|location=Sequence derived from alignment at H-elongata_contig61329:128..2034- (Himanthalia elongata Himel1 dioecious)
GCCGTACGCTGCCCCCTGTGGCACCGGGTACAGCAAGAAGCACGGCAGAT GGTGACTGGCTTGAAAATTGGAACCGTCAGCCCATCGGGTTGTGCTGTGG GATTTTCGCCGAGCGTACCGTATTTTTTTCTTCTTTCCAACCATTACTAT AATAGTGACCATCGCTCGATTGAAATGCTCCACTATCCGGCAGATCTATT GATAAGAGTTAAATGGTATTTTTGGATAGGATTGTACAACCTTTGTGGGA CACAACCTCTGGCACGGTGGTACGTCACATACTCATGAATTTATAATTCG AGGTTCTACGATCAAGATGTTAGCACCGATAGACCACGAATATGGTCGCC GGCTCTAAGATCAGCTTCTTGTTTCACTTCCGTAGCTTGCGCCCAGGTCT CAAGAAGCGACCTCTGTTCTGGTTGATCGGCAGTAATCGTACGATTAATT GTGAAGCAGACACGCGGAGCCAAATTTGATACCATGGCGGCTGACTGGCG ACTCACATTCCGTATCGATTTCGCATCCAAGCTGCGTGGTTCATGATACC CTTCCAACCCCACGTACCGTTACCAAATCCTGTGACCGAGGCATGCGCAC TCGTTCAAAAACTGTTGAACAACAGCAAAGTTTCCAAGATATCGTGCGCC TGGTGTCCGAATATTCAAAATTCTTCCTTCTCTATTACCCGTAACCCTTT TCTCCTCTAATACCCCCATCCATTTTATCCTTCCGTCACTCTCGTGCTCA AAACGTTTCTAACCAGATGAGGGAAGAACCTGCTCTGGCAAGATACTTCC GAATGACGCTCCTGACGTACGGTACAATGGAGCGCGCCCTGGCCTACCAC TTGGCGTGCAAAATCGGCAACGACTCTGTTTCCATGGAGACATGGGATGA GCTCCTCGCCGACGTGCTCGAGGCGCACGCGGGCGATCTCGGCGAATTTT TCCGCGCGGATCTTGTGGCAATCCTCGACAGGGATCCCGCGGCGGAAGGC CCAGCGCACGCATTCCTCAACTTCAAGTAAGGAGTTCGCGCGCGTCGAGC GTCCCGCGCGGCTAGCAATCAATATATTGTGTTCTACAGCTGGATCATAC GTCATACACCCCCCTGCTCGGAGTTGCGCTTTATTTTATTCCCCTTGTTG CTATTGCCTCTCGAACTCCGCGGTATGGTTAAAGAACATTCGGAGCAACA TTATCCACTCACTCGTAGGTCTCTTCGGGAGGCAAATACAACCCGGAAAC TGTTGTGATCGGCACTTGAGATACCCATGGTTCTCTCGAGTTATTTCTTG CTTCAGCGAAAGGTTGGCCATCTTATTTCTTCAGGAAGCGAAATTTTGGC GTTCTAGTTGATTTACGTGAAAACTGGCGCGAATGCTCTCAACGGTTAGG ACCTTCGGAGTTTTCCGGGAAAACTCGCTCGCCTGAGTGAAAGGTGTGGA AGCTCACGAGAGCGTAAATGGAAAAAGTGCAAGTTCCGGATGGTGCCGGG AGTATGCCGAAAAGCTCGAACGTGTCTTATAACATCCAGCCCGTGCGTTG GGTCTCGGCCGCAGGGGCTTCCTCGGCCTGGAGGCGAGTCGTATTGCGCA CGTCCTCTGGAAAGAGAATAGGAGGGCTTTGGCGCTCTCTATCCAGAGCC GCGTATCCGAAGTCTTCGGAATGGATATCCACCCTGGCTGCAAGCTGGGG AAGGGAGTAATGATCGATCACGCCACGGGCGTCGTGTTCGGAGAAACTGC GGTGGTCGGAAACGATTGCACGTTCCTTCATGGGGTAACCCTCGGCGGCA CAGGAAAGACGCGGGGTGATCGCCACCCGAAGCTTGGATGCGGGATCCTT GTGGGCGCTGGCTCCATGATTCTGGGCAACATCACGGTCGGCGATGGGTG CAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig61329:128..2034-

>mRNA_H-elongata_contig61329.13685.1 ID=mRNA_H-elongata_contig61329.13685.1|Name=mRNA_H-elongata_contig61329.13685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig61329:128..2034- (Himanthalia elongata Himel1 dioecious)
GCCGTACGCTGCCCCCTGTGGCACCGGGTACAGCAAGAAGCACGGCAGAT
GGCCGTACGCTGCCCCCTGTGGCACCGGGTACAGCAAGAAGCACGGCAGA
TGATGAGGGAAGAACCTGCTCTGGCAAGATACTTCCGAATGACGCTCCTG
ACGTACGGTACAATGGAGCGCGCCCTGGCCTACCACTTGGCGTGCAAAAT
CGGCAACGACTCTGTTTCCATGGAGACATGGGATGAGCTCCTCGCCGACG
TGCTCGAGGCGCACGCGGGCGATCTCGGCGAATTTTTCCGCGCGGATCTT
GTGGCAATCCTCGACAGGGATCCCGCGGCGGAAGGCCCAGCGCACGCATT
CCTCAACTTCAAATGAGGGAAGAACCTGCTCTGGCAAGATACTTCCGAAT
GACGCTCCTGACGTACGGTACAATGGAGCGCGCCCTGGCCTACCACTTGG
CGTGCAAAATCGGCAACGACTCTGTTTCCATGGAGACATGGGATGAGCTC
CTCGCCGACGTGCTCGAGGCGCACGCGGGCGATCTCGGCGAATTTTTCCG
CGCGGATCTTGTGGCAATCCTCGACAGGGATCCCGCGGCGGAAGGCCCAG
CGCACGCATTCCTCAACTTCAAGGGCTTCCTCGGCCTGGAGGCGAGTCGT
ATTGCGCACGTCCTCTGGAAAGAGAATAGGAGGGCTTTGGCGCTCTCTAT
CCAGAGCCGCGTATCCGAAGTCTTCGGAATGGATATCCACCCTGGCTGCA
AGCTGGGGAAGGGAGTAATGATCGATCACGCCACGGGCGTCGTGTTCGGA
GAAACTGCGGTGGTCGGAAACGATTGCACGTTCCTTCATGGGGTAACCCT
CGGCGGCACAGGAAAGACGCGGGGTGATCGCCACCCGAAGCTTGGATGCG
GGATCCTTGTGGGCGCTGGCTCCATGATTCTGGGCAACATCACGGTCGGC
GATGGGTGCAAGGTAGGGCTTCCTCGGCCTGGAGGCGAGTCGTATTGCGC
ACGTCCTCTGGAAAGAGAATAGGAGGGCTTTGGCGCTCTCTATCCAGAGC
CGCGTATCCGAAGTCTTCGGAATGGATATCCACCCTGGCTGCAAGCTGGG
GAAGGGAGTAATGATCGATCACGCCACGGGCGTCGTGTTCGGAGAAACTG
CGGTGGTCGGAAACGATTGCACGTTCCTTCATGGGGTAACCCTCGGCGGC
ACAGGAAAGACGCGGGGTGATCGCCACCCGAAGCTTGGATGCGGGATCCT
TGTGGGCGCTGGCTCCATGATTCTGGGCAACATCACGGTCGGCGATGGGT
GCAAGGTA
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