mRNA_H-elongata_contig61319.13684.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61319.13684.1
Unique NamemRNA_H-elongata_contig61319.13684.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: D8LU95_ECTSI (Fip1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU95_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.770e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLR 135
            KTAFDVDIDG+EEQPWRHPGVDIADFFNYGFTE+SWRVYCEKQLR
Sbjct:  336 KTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 380
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: A0A6H5JF87_9PHAE (Fip1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF87_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.690e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLR 135
            KTAFDVDIDG+EEQPWRHPGVDIADFFNYGFTE+SWRVYCEKQLR
Sbjct:  335 KTAFDVDIDGMEEQPWRHPGVDIADFFNYGFTEDSWRVYCEKQLR 379
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: A0A067C040_SAPPC (Fip1 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C040_SAPPC)

HSP 1 Score: 82.0 bits (201), Expect = 2.500e-17
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLR 135
            +TAFDVDID LEE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  140 RTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDEASWRDYCAKQLQ 184
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: A0A1W0A514_9STRA (Pre-mRNA polyadenylation factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A514_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.680e-17
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLR 135
            +TAFDVDID LEE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  129 RTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDESSWRDYCTKQLQ 173
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: T0QKY1_SAPDV (Fip1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QKY1_SAPDV)

HSP 1 Score: 82.0 bits (201), Expect = 3.640e-17
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLR 135
            +TAFDVDID LEE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  143 RTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDEASWRDYCAKQLQ 187
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: A0A1V9YWA6_9STRA (Pre-mRNA polyadenylation factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWA6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.860e-17
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLR 135
            +TAFDVDID LEE+PWR PGVDI+D+FNYGF E SWR YC KQL+
Sbjct:  139 RTAFDVDIDQLEEKPWRKPGVDISDYFNYGFDETSWRDYCAKQLQ 183
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: UPI00155B1E59 (LOW QUALITY PROTEIN: FIP1[V]-like protein n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155B1E59)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-16
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEK--QLR 135
            KT FDVDID  EE+PWRHPGVDI+DFFN+GF EESW+ YC++  QLR
Sbjct:   99 KTIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLR 145
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: F6HYI9_VITVI (Fip1 domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=F6HYI9_VITVI)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-16
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEK--QLR 135
            KT FDVDID  EE+PWRHPGVDI+DFFN+GF EESW+ YC++  QLR
Sbjct:  412 KTIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLR 458
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: A0A438IHG8_VITVI (FIP1[V]-like protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IHG8_VITVI)

HSP 1 Score: 79.3 bits (194), Expect = 2.020e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    4 TAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEK--QLR 135
            T FDVDID  EE+PWRHPGVDI+DFFN+GF EESW+ YC++  QLR
Sbjct:   23 TIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLR 68
[Close]
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Match: A5C7M9_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5C7M9_VITVI)

HSP 1 Score: 79.3 bits (194), Expect = 5.160e-16
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    4 TAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEK--QLR 135
            T FDVDID  EE+PWRHPGVDI+DFFN+GF EESW+ YC++  QLR
Sbjct:   62 TIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLR 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61319.13684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU95_ECTSI1.770e-2495.56Fip1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JF87_9PHAE2.690e-2495.56Fip1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A067C040_SAPPC2.500e-1775.56Fip1 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A1W0A514_9STRA2.680e-1775.56Pre-mRNA polyadenylation factor n=1 Tax=Thraustoth... [more]
T0QKY1_SAPDV3.640e-1775.56Fip1 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A1V9YWA6_9STRA3.860e-1775.56Pre-mRNA polyadenylation factor n=1 Tax=Achlya hyp... [more]
UPI00155B1E591.080e-1672.34LOW QUALITY PROTEIN: FIP1[V]-like protein n=1 Tax=... [more]
F6HYI9_VITVI1.080e-1672.34Fip1 domain-containing protein n=2 Tax=Vitis TaxID... [more]
A0A438IHG8_VITVI2.020e-1671.74FIP1[V]-like protein n=1 Tax=Vitis vinifera TaxID=... [more]
A5C7M9_VITVI5.160e-1671.74Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61319contigH-elongata_contig61319:738..890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog2880.D8LU95
Preferred namefip1l1
KEGG rclassRC01214,RC01958,RC03092,RC03093
KEGG koko:K02293,ko:K14405
KEGG ReactionR04786,R04787,R07510,R09652,R09653,R09654
KEGG Pathwayko00906,ko01100,ko01110,ko03015,map00906,map01100,map01110,map03015
KEGG ModuleM00097
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0098787,GO:0098789,GO:1901360
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG5213@1,KOG1049@2759
EC1.3.5.5
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPre-mRNA polyadenylation factor Fip1
Ec32 orthologEc-14_004180.1
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.93462-CDS-H-elongata_contig61319:737..8901622930989.93462-CDS-H-elongata_contig61319:737..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61319 738..890 -
1691679652.7990353-CDS-H-elongata_contig61319:737..8901691679652.7990353-CDS-H-elongata_contig61319:737..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61319 738..890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61319.13684.1prot_H-elongata_contig61319.13684.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61319 738..890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61319.13684.1

>prot_H-elongata_contig61319.13684.1 ID=prot_H-elongata_contig61319.13684.1|Name=mRNA_H-elongata_contig61319.13684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
KTAFDVDIDGLEEQPWRHPGVDIADFFNYGFTEESWRVYCEKQLRCVSFT
*
back to top

mRNA from alignment at H-elongata_contig61319:738..890-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61319.13684.1 ID=mRNA_H-elongata_contig61319.13684.1|Name=mRNA_H-elongata_contig61319.13684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig61319:738..890- (Himanthalia elongata Himel1 dioecious)
AAGACAGCTTTTGATGTAGATATCGACGGGTTGGAGGAGCAGCCCTGGAG
ACACCCTGGGGTGGACATAGCAGACTTTTTCAACTACGGGTTCACCGAGG
AGTCGTGGAGAGTCTATTGCGAGAAGCAGCTGAGGTGTGTGTCATTTACG
TAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61319:738..890-

>mRNA_H-elongata_contig61319.13684.1 ID=mRNA_H-elongata_contig61319.13684.1|Name=mRNA_H-elongata_contig61319.13684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig61319:738..890- (Himanthalia elongata Himel1 dioecious)
AAGACAGCTTTTGATGTAGATATCGACGGGTTGGAGGAGCAGCCCTGGAG
ACACCCTGGGGTGGACATAGCAGACTTTTTCAACTACGGGTTCACCGAGG
AGTCGTGGAGAGTCTATTGCGAGAAGCAGCTGAGGTGTGTGTCATTTACG
TAGAAGACAGCTTTTGATGTAGATATCGACGGGTTGGAGGAGCAGCCCTG
GAGACACCCTGGGGTGGACATAGCAGACTTTTTCAACTACGGGTTCACCG
AGGAGTCGTGGAGAGTCTATTGCGAGAAGCAGCTGAGGTGTGTGTCATTT
ACGTAG
back to top