mRNA_H-elongata_contig61318.13683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61318.13683.1
Unique NamemRNA_H-elongata_contig61318.13683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: D7FVW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW2_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 7.830e-100
Identity = 142/181 (78.45%), Postives = 163/181 (90.06%), Query Frame = 1
Query:    1 RTGNAAKIYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQPRDEVVDPEPPKPSEALAHWSNH 543
            R G AAK+ R+NLPP+G+SLTEC+P AAGFIAD DRFHSDTVGEE LRRKAQH+R+VQIN N+RQLRVEREGKRWEDMEKK+  D +RW+RLR +GEKSKKNKSGVPYNMISL YNDGLDG R+E+ DN+ KHRAQ+RSNNLTRLGDSRCGYNILTGQPR+E+VDP  PKPS+A+A WS+H
Sbjct:   23 RAGQAAKMNRDNLPPEGVSLTECTPDAAGFIADADRFHSDTVGEEHLRRKAQHERKVQINDNRRQLRVEREGKRWEDMEKKEGDDEQRWNRLRDEGEKSKKNKSGVPYNMISLRYNDGLDGDRLEYADNVTKHRAQVRSNNLTRLGDSRCGYNILTGQPREEIVDPPVPKPSDAVALWSHH 203          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A835Z1N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N9_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.390e-51
Identity = 93/190 (48.95%), Postives = 118/190 (62.11%), Query Frame = 1
Query:    1 RTGNAAKIYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQPRDEVVDPEPPKPSEALA---------HWSNH 543
            R G AA+ YR+NLPP+G+SLTE  P AAGFIAD DRFH+D VGEE +RR A+H+RR QI  ++R+ + +RE  RW +M                +G K+KKN SG+PY+MISL Y  G DG R+ H+D L +HRA +RSN L+RLGD R GYNI++G P     DP  P    A A         HW  H
Sbjct:   23 RAGRAAREYRDNLPPEGVSLTEAHPGAAGFIADADRFHTDVVGEELVRRTAEHERRQQIVDHRRRQKQDREENRWTEMRXXXXXXXXXXXXXXXEGVKAKKNASGIPYDMISLTYRKGADGARLRHDDALTQHRAALRSNQLSRLGDGRSGYNIISGAPCAPRADPPRPLSQAAPAXXXXXXXGAHWMAH 212          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A7S2XXX1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXX1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.930e-50
Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    1 RTGNAAKIYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQPRDEV 489
            R G+ AKIYREN P +G+ L    P AAGFI+D DRFHSDT GEE LRR+A+  R+V+    +R   ++RE +RW+ ++    AD E+W+R+R    KSKKNKS VPYN I+L YNDG DG+R+   D   + RA MR  N+ R GD+RCGYNILTG+ R E 
Sbjct:   53 RAGHQAKIYRENAPVEGVGLLGLPPDAAGFISDADRFHSDTSGEELLRRQAEQARKVEFYEKRRAKNIDREEERWQKIKDDKIADEEKWNRMREMEVKSKKNKSAVPYNAITLQYNDGHDGERLRQEDQRTRDRAHMRQQNMARHGDTRCGYNILTGEARSET 215          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A7S4ECF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECF0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.680e-35
Identity = 74/176 (42.05%), Postives = 110/176 (62.50%), Query Frame = 1
Query:    1 RTGNAAKIYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQPRDEVVDPEPPKPSEALA 528
            RTG AAK+YREN P     L    P AAGF+AD DRFH+D  GE++LRR A+  +      + R  R + E +RW  ++++   +   W   R  G K+K+N S VP++M++L Y+D LDG+R+ ++D+ +++RA +RS+NL + G SR GY+ILTG     +  P  P+ S ALA
Sbjct:   61 RTGLAAKMYRENAPDTSDGLVVPRPDAAGFMADSDRFHTDVAGEDKLRRDAKIKQDYLRREHTRLERAKAEEQRWARIQQEKANEEANWLAERQAGIKAKRNASSVPFDMVTLQYHDSLDGERLRYHDDKVRYRAAVRSSNLLKNGGSRAGYDILTGGDVRGLQKPSYPQASGALA 236          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A067C5C9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5C9_SAPPC)

HSP 1 Score: 119 bits (297), Expect = 1.950e-30
Identity = 61/152 (40.13%), Postives = 99/152 (65.13%), Query Frame = 1
Query:   22 IYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQP 477
              R +    G ++T  +P + GF++D DRFH+D  GEE++ R+++H +   +  ++R+    RE +RW+ M+ K   + +RWDRLR DG K+++NK+   YN+++L YNDG DG+R+   DN I+HRA +R+ NL +  +SR G N +TG P
Sbjct:   35 FIRVDTSISGSAMTVQAPGSQGFMSDADRFHTDVAGEEKVLRESRHAKHQLVYDHKRRDNQLREDQRWKTMDAKAAEEKQRWDRLRDDGGKARRNKASCDYNLVTLKYNDGKDGERLMKADNEIRHRATVRAANL-QFQNSRAGINPITGDP 185          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A1W0A626_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A626_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.010e-29
Identity = 59/143 (41.26%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   49 GLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQP 477
            G ++T  +P + GF++D DRFH+D  GEE++ R+++  +   +  N+RQ    RE +RW+ M+ K   + +RWDR+R DG K+++NKS   +N+++L YNDG DG R++  D+ I+HRA +R+ NL +  +SR G N +TG P
Sbjct:   44 GSAMTVQAPGSQGFMSDADRFHTDVAGEEKVVRESRMAKHQMVYDNKRQNNQIREEQRWKTMDAKAAEERQRWDRMREDGGKARRNKSSCEFNLVTLKYNDGKDGDRLKKADSEIRHRATVRAANL-QFQNSRAGINPITGDP 185          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A1V9YB29_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YB29_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.450e-28
Identity = 59/152 (38.82%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   22 IYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQP 477
              R +    G ++TE +  + G+++D DRFH+D  GEE++ R+++  +   +  ++RQ    RE +RW+ M+ K   + +RWDRLR DG K+++NKS   +N+++L YNDG DG+R+   D+ I+HRA +R+ NL +  +SR G N +TG P
Sbjct:   35 FIRVDTSISGAAMTEQAHGSQGYMSDADRFHTDVAGEEKVARESRTAKHQLVYDHKRQNNQLREEQRWKAMDAKSAEEKQRWDRLRDDGGKARRNKSSCDFNLVTLKYNDGKDGERLMKADSEIRHRAAVRAANL-QFQNSRAGINPITGDP 185          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A6G0XI40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI40_9STRA)

HSP 1 Score: 107 bits (266), Expect = 8.310e-26
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   49 GLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQPRDEV 489
            G ++T  +  + G+++D DRFH+D  GEE++ R+++  R       +R+    RE  RW+ M+ K   D  RWD LR DG K+++NKS   +N I+L YNDG DG+R+   D+ I+HRA +R+ NL +   SR G N +TG P   V
Sbjct:   44 GSAMTVQAAGSQGYMSDADRFHTDVAGEEKVLRESRIARHQMTYDTRRRSNQLREEHRWQAMDAKAAEDKARWDHLRQDGGKARRNKSSCEFNPITLKYNDGKDGERLRQADSEIRHRASLRAANL-QYNSSRAGINPITGDPVPRV 189          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: A0A662WDK2_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDK2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.800e-26
Identity = 65/167 (38.92%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   22 IYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLR---VEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQP--RDEVVDPEPP 507
              R +    G ++   +PQ+ G+++D DRFHSDT GEE   R A+ D R ++   Q   R   V R+ +RWE M+     + +R   LR+ G K+++NK G P+N ++L YNDG DG+R++  D  +KHRA +R+ NL     SR G N +TG P  R +  D  PP
Sbjct:   43 FVRVDTSATGSAMLVYAPQSQGYMSDADRFHSDTAGEE---RAAREDARARVKVQQEHRRHESVNRDVRRWEAMDAASAEEKQRXXXLRASGSKARRNKCGEPFNPVTLRYNDGKDGERLQAADVAVKHRATLRAQNLQHHN-SREGINPITGAPIRRVQTRDLLPP 205          
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Match: D0NCH5_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NCH5_PHYIT)

HSP 1 Score: 107 bits (267), Expect = 9.940e-26
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   22 IYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRKAQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSKKNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRCGYNILTGQ 474
              R +    G ++   +PQ+ GF++D DRFHSDT GEE+  R+    R       +R+  V R+ +RW+ M+     D  R + LR+ G K+++NK G P+N+I+L YNDG DGQR++  D  IK RA +R+ NL +  +SR G N +TG+
Sbjct:   48 FVRVDTSAAGSAMLVYTPQSQGFMSDADRFHSDTAGEERAAREGTRARARMQQDRRRREAVNRDVRRWDAMDAAAAEDKRRGEALRASGSKARRNKGGEPFNLITLKYNDGKDGQRLQAADAAIKQRAMLRAQNL-QYHNSREGINPITGE 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61318.13683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVW2_ECTSI7.830e-10078.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1N9_9STRA1.390e-5148.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XXX1_9STRA1.930e-5052.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4ECF0_9STRA6.680e-3542.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067C5C9_SAPPC1.950e-3040.13Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A626_9STRA3.010e-2941.26Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9YB29_9STRA2.450e-2838.82Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XI40_9STRA8.310e-2640.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662WDK2_9STRA8.800e-2638.92Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D0NCH5_PHYIT9.940e-2639.74Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61318contigH-elongata_contig61318:336..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue3.3e-23
Seed eggNOG ortholog36331.EPrPI00000016882
EggNOG free text desc.Source PGD
EggNOG OGs1MHF2@121069,2CUJ5@1,2S4E6@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002360.1
Exons5
Model size549
Cds size549
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61318.13683.1prot_H-elongata_contig61318.13683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61318 336..2106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.4784489-CDS-H-elongata_contig61318:335..4321622930989.4784489-CDS-H-elongata_contig61318:335..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 336..432 +
1691679652.746034-CDS-H-elongata_contig61318:335..4321691679652.746034-CDS-H-elongata_contig61318:335..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 336..432 +
1622930989.4985363-CDS-H-elongata_contig61318:879..9771622930989.4985363-CDS-H-elongata_contig61318:879..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 880..977 +
1691679652.7591462-CDS-H-elongata_contig61318:879..9771691679652.7591462-CDS-H-elongata_contig61318:879..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 880..977 +
1622930989.7614622-CDS-H-elongata_contig61318:1275..14211622930989.7614622-CDS-H-elongata_contig61318:1275..1421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 1276..1421 +
1691679652.7671275-CDS-H-elongata_contig61318:1275..14211691679652.7671275-CDS-H-elongata_contig61318:1275..1421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 1276..1421 +
1622930989.851999-CDS-H-elongata_contig61318:1760..18651622930989.851999-CDS-H-elongata_contig61318:1760..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 1761..1865 +
1691679652.7758522-CDS-H-elongata_contig61318:1760..18651691679652.7758522-CDS-H-elongata_contig61318:1760..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 1761..1865 +
1622930989.868029-CDS-H-elongata_contig61318:2003..21061622930989.868029-CDS-H-elongata_contig61318:2003..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 2004..2106 +
1691679652.785519-CDS-H-elongata_contig61318:2003..21061691679652.785519-CDS-H-elongata_contig61318:2003..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61318 2004..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61318.13683.1

>prot_H-elongata_contig61318.13683.1 ID=prot_H-elongata_contig61318.13683.1|Name=mRNA_H-elongata_contig61318.13683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
RTGNAAKIYRENLPPDGLSLTECSPQAAGFIADVDRFHSDTVGEEQLRRK
AQHDRRVQINANQRQLRVEREGKRWEDMEKKDEADIERWDRLRSDGEKSK
KNKSGVPYNMISLMYNDGLDGQRMEHNDNLIKHRAQMRSNNLTRLGDSRC
GYNILTGQPRDEVVDPEPPKPSEALAHWSNHI*
back to top

mRNA from alignment at H-elongata_contig61318:336..2106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61318.13683.1 ID=mRNA_H-elongata_contig61318.13683.1|Name=mRNA_H-elongata_contig61318.13683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-elongata_contig61318:336..2106+ (Himanthalia elongata Himel1 dioecious)
AGGACTGGAAACGCAGCGAAGATATATCGCGAAAACCTACCCCCCGACGG ATTATCGCTTACCGAGTGCAGCCCTCAAGCAGCAGGCTTCATTGCCGGTG AGCCAACCCTTAAGAGTAATCCTCCCCTTAAGAGTAATCCTCCCCTTAAG AGTAATCCTCCCCTTAAGAGTAATCCTCCCCGACACCTTTCTCTCTGATA TGGACGTGAAAAGCTTACAAACAGCGGTGGAATGCTTCGATTGCGCCAAA AACGTCCAGCAACGGCTCGTAAGCTGCTGTGTTGCGGAAAATTCTTGGAG CGTCACGGTCGAAAACAGCAAAGGTATATATATATATATATATATATATC GACACAAAATATTCCTTATCCACAAGACCATCTTTCGTTTCCGGCATGAC GTTTTTAGCAGCCTTCTCGGGATGTCGCTTAATCAAACGGTTCTCACATC AGATTATGATATCGAAGAGTTTTACTCCAAGCCTTCTAGAAGCGCTGCCT CCCCGTTCCCCTGAAAGGGTCCGTTGCCTTCTTGCCTTCGTCAGACGTTG ACAGGTTTCACTCGGACACAGTCGGTGAGGAGCAACTCCGGCGGAAGGCG CAGCACGACCGAAGAGTCCAGATAAACGCAAACCAACGACAGGTACGAGA ACGAACTCTTATTCGAGACAGCAGCAGCTCGTCTCGGATGTCGCCATGAT AGCGAGAGGGCTCCGGGTGGGACACGATATACTGGCTTGTCAATCATTGA AAAAAAAGGTCTTGAGAGCACTCTCTGTGCCCAGGGCCGGTATATACCTA AGCCTCGCTGGTTTTGTCCGCCCAACGCACGTGCCCGATGAAAGTCTAGG GAAATCGCGAACACAGGCCTACTCTTAACATCCCTGCGACAATAGCCTGA CTCGTGCATTTTCGTGTAATCCCGTGCTTGGTGGAAGAAGTTGCGTGTCG AGCGCGAGGGCAAGCGGTGGGAAGATATGGAGAAGAAGGATGAGGCCGAT ATCGAGCGCTGGGATCGTCTCAGGTCGGATGGGGAGAAGAGCAAGAAGAA CAAGTCCGGCGTACCGTACAACATGATCAGCCTCATGTCAGTACAGCGTC GAGCAACAAGCGGACGCCTTGATGGCGAGGAGGGTGTATTGATTTACCAT CAGAACATATTTTCTTCCTCCAAAGCCTGATCAACGCGGCGGAAGTACGA TTCTGAGGTAGCGCGTTACCTTGCGTCTACCATCTTCAACACAAGATTCC CACGACTTAGGGACTCGTTAGCAACGTCTCCGGTCAATGTTTGACAAACA GCGATATGCCTATTTACTTTTCCACCATGTTGTATGTACCACGAGAACTA GTCAACGATAACACGCCGGTTTTGCATCTCTTTGCTCCCGCTCCCCTCGT CCCGTGTTGGATATACCCCAAAAAGGTACAACGACGGCCTTGACGGCCAG CGTATGGAGCACAACGACAACCTAATCAAGCACAGGGCTCAGATGAGGTC TAACAACCTCACGCGCCTTGGAGACTCAAGGTAAGCACGGGACGGCCCGT TCAGAGAAACCGCAAAACCCTGCTTCGGCTCCGAACATGTCCTCTGTCCT CACGCTTTGCCAAAATCCACAACCCCATGCCTCGTGGACATCCTCCCTCT ATGCTCTTTCCTCGACAGATGCGGTTATAACATTCTCACCGGGCAACCCA GGGACGAGGTGGTGGATCCAGAACCGCCGAAGCCGAGCGAGGCACTCGCG CATTGGAGTAATCATATTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61318:336..2106+

>mRNA_H-elongata_contig61318.13683.1 ID=mRNA_H-elongata_contig61318.13683.1|Name=mRNA_H-elongata_contig61318.13683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig61318:336..2106+ (Himanthalia elongata Himel1 dioecious)
AGGACTGGAAACGCAGCGAAGATATATCGCGAAAACCTACCCCCCGACGG
ATTATCGCTTACCGAGTGCAGCCCTCAAGCAGCAGGCTTCATTGCCGAGG
ACTGGAAACGCAGCGAAGATATATCGCGAAAACCTACCCCCCGACGGATT
ATCGCTTACCGAGTGCAGCCCTCAAGCAGCAGGCTTCATTGCCGACGTTG
ACAGGTTTCACTCGGACACAGTCGGTGAGGAGCAACTCCGGCGGAAGGCG
CAGCACGACCGAAGAGTCCAGATAAACGCAAACCAACGACAGACGTTGAC
AGGTTTCACTCGGACACAGTCGGTGAGGAGCAACTCCGGCGGAAGGCGCA
GCACGACCGAAGAGTCCAGATAAACGCAAACCAACGACAGTTGCGTGTCG
AGCGCGAGGGCAAGCGGTGGGAAGATATGGAGAAGAAGGATGAGGCCGAT
ATCGAGCGCTGGGATCGTCTCAGGTCGGATGGGGAGAAGAGCAAGAAGAA
CAAGTCCGGCGTACCGTACAACATGATCAGCCTCATTTGCGTGTCGAGCG
CGAGGGCAAGCGGTGGGAAGATATGGAGAAGAAGGATGAGGCCGATATCG
AGCGCTGGGATCGTCTCAGGTCGGATGGGGAGAAGAGCAAGAAGAACAAG
TCCGGCGTACCGTACAACATGATCAGCCTCATGTACAACGACGGCCTTGA
CGGCCAGCGTATGGAGCACAACGACAACCTAATCAAGCACAGGGCTCAGA
TGAGGTCTAACAACCTCACGCGCCTTGGAGACTCAAGGTACAACGACGGC
CTTGACGGCCAGCGTATGGAGCACAACGACAACCTAATCAAGCACAGGGC
TCAGATGAGGTCTAACAACCTCACGCGCCTTGGAGACTCAAGATGCGGTT
ATAACATTCTCACCGGGCAACCCAGGGACGAGGTGGTGGATCCAGAACCG
CCGAAGCCGAGCGAGGCACTCGCGCATTGGAGTAATCATATTTGAATGCG
GTTATAACATTCTCACCGGGCAACCCAGGGACGAGGTGGTGGATCCAGAA
CCGCCGAAGCCGAGCGAGGCACTCGCGCATTGGAGTAATCATATTTGA
back to top