mRNA_H-elongata_contig61317.13682.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61317.13682.1
Unique NamemRNA_H-elongata_contig61317.13682.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61317.13682.1 vs. uniprot
Match: D7G522_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G522_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 2.390e-104
Identity = 167/243 (68.72%), Postives = 196/243 (80.66%), Query Frame = 1 
Query:   31 ADLERAAKSINTVAEEQGMLATLREEVGEACRCLNSFGEGVQQANKNFQEDEQELEGLSYAESLVVPLMKIPVRKLNALGQDSRLHVEIRRLCPPNDKPPYICIIIAPSSRYIFHSFPLEETKAAEAFEHVLEGIVMAVVTEGMGMIDEISRIRPAQLTTTDPLLVNFLSPLLQGTRVSVAASSNKVVNADSDAKTKESPLIAIMDGVFADFNKEIKKANSKRKLPIGDTMAEEAKWKVTNYT 759
            ADL++A + +N VA E GML  L + VG  C+CL  F  G        +  E+E EGL+YAESL  P +KIPV+K NA GQDSRLHVEIRRL  P+DK PY+CI+IAP+SRY+FHSFP+EET+A +AF HVLEGIVM VVTEGMGMI+E  RIRPAQLTTTDPLL NFLSPLL+GTRVSVAASS+KVVNADSDAKTKESPLIAIMDGV+ADF  ++ KANSKRKLPIGD M++EA +KV + T
Sbjct:   95 ADLDKATEEVNAVATEAGMLEALTKAVGSNCKCLTLFTPG-----NPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNATGQDSRLHVEIRRLPAPHDKAPYLCILIAPASRYVFHSFPIEETQADKAFMHVLEGIVMGVVTEGMGMIEEAVRIRPAQLTTTDPLLANFLSPLLEGTRVSVAASSDKVVNADSDAKTKESPLIAIMDGVYADFFIDLTKANSKRKLPIGDNMSDEAAFKVKSRT 332
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BLAST of mRNA_H-elongata_contig61317.13682.1 vs. uniprot
Match: A0A6H5KRE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE4_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 2.080e-95
Identity = 150/214 (70.09%), Postives = 173/214 (80.84%), Query Frame = 1 
Query:   25 LQADLERAAKSINTVAEEQGMLATLREEVGEACRCLNSFGEGVQQANKNFQEDEQELEGLSYAESLVVPLMKIPVRKLNALGQDSRLHVEIRRLCPPNDKPPYICIIIAPSSRYIFHSFPLEETKAAEAFEHVLEGIVMAVVTEGMGMIDEISRIRPAQLTTTDPLLVNFLSPLLQGTRVSVAASSNKVVNADSDAKTKESPLIAIMDGVFADF 666
            L ADL++AA+ +N VA E GML  L + VG  C CL  F  G        +  E+E EGL+YAESL  P +KIPV+K NA+GQDSRLHVEIRRL  P+DK PY+CI+IAP+SRY+FHSFP+EET+A +AF HVLEGIVM VVTEGMGMI+E  RIRPAQLTTTDPLL  FLSPLL+GTRVSVAASS+KVVNADSDAKTKESPLIAIMDGV+ADF
Sbjct:    4 LVADLDKAAEEVNAVATEAGMLEALTKAVGSKCNCLTLFTPG-----NPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNAVGQDSRLHVEIRRLPAPHDKAPYLCILIAPASRYVFHSFPIEETQADKAFMHVLEGIVMGVVTEGMGMIEEAVRIRPAQLTTTDPLLAKFLSPLLEGTRVSVAASSDKVVNADSDAKTKESPLIAIMDGVYADF 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61317.13682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G522_ECTSI2.390e-10468.72MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KRE4_9PHAE2.080e-9570.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61317contigH-elongata_contig61317:264..3230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, MYND-type
Ec32 orthologEc-00_008200.1
Exons4
Model size777
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61317.13682.1prot_H-elongata_contig61317.13682.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61317 264..3230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.3772264-CDS-H-elongata_contig61317:263..4761622930989.3772264-CDS-H-elongata_contig61317:263..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 264..476 +
1691679652.6903553-CDS-H-elongata_contig61317:263..4761691679652.6903553-CDS-H-elongata_contig61317:263..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 264..476 +
1622930989.3906538-CDS-H-elongata_contig61317:1237..13261622930989.3906538-CDS-H-elongata_contig61317:1237..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 1238..1326 +
1691679652.7153046-CDS-H-elongata_contig61317:1237..13261691679652.7153046-CDS-H-elongata_contig61317:1237..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 1238..1326 +
1622930989.4098969-CDS-H-elongata_contig61317:2047..24161622930989.4098969-CDS-H-elongata_contig61317:2047..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 2048..2416 +
1691679652.7248142-CDS-H-elongata_contig61317:2047..24161691679652.7248142-CDS-H-elongata_contig61317:2047..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 2048..2416 +
1622930989.427238-CDS-H-elongata_contig61317:3124..32301622930989.427238-CDS-H-elongata_contig61317:3124..3230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 3125..3230 +
1691679652.7345743-CDS-H-elongata_contig61317:3124..32301691679652.7345743-CDS-H-elongata_contig61317:3124..3230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61317 3125..3230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61317.13682.1

>prot_H-elongata_contig61317.13682.1 ID=prot_H-elongata_contig61317.13682.1|Name=mRNA_H-elongata_contig61317.13682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MRSDAASPLQADLERAAKSINTVAEEQGMLATLREEVGEACRCLNSFGEG
VQQANKNFQEDEQELEGLSYAESLVVPLMKIPVRKLNALGQDSRLHVEIR
RLCPPNDKPPYICIIIAPSSRYIFHSFPLEETKAAEAFEHVLEGIVMAVV
TEGMGMIDEISRIRPAQLTTTDPLLVNFLSPLLQGTRVSVAASSNKVVNA
DSDAKTKESPLIAIMDGVFADFNKEIKKANSKRKLPIGDTMAEEAKWKVT
NYTRVRYL*
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mRNA from alignment at H-elongata_contig61317:264..3230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61317.13682.1 ID=mRNA_H-elongata_contig61317.13682.1|Name=mRNA_H-elongata_contig61317.13682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2967bp|location=Sequence derived from alignment at H-elongata_contig61317:264..3230+ (Himanthalia elongata Himel1 dioecious)
ATGCGATCCGACGCGGCGTCTCCGCTCCAGGCGGACCTCGAGAGAGCGGC
AAAGAGCATAAACACCGTGGCGGAGGAGCAAGGGATGCTTGCCACCCTGA
GGGAGGAAGTGGGAGAGGCCTGCAGGTGCCTGAACTCTTTTGGCGAGGGA
GTGCAACAGGCCAACAAGAACTTCCAGGAGGATGAGCAAGAGCTAGAGGG
GCTATCCTACGCCGTGAGCAACATAATTAGTTAATGATGCCATCTTCCCC
TGCTCGCTTGGTGAATCATCTATCATTCCCTATCCTCCTGGAATGTATCC
ATTGCATCGATCTCGTTGCTCGAGATTATCTCGTTCGGAAGGTGCAATTT
TATTACGTAGTTTTCTTTTTTTGCTGCCTTTACCCCTCTGGCCGCCCCCT
ACACTCCTCCATATCTTGACTCCACTCTACAGTACAGTATATAATATATC
CTATAGCCTATAGCCTTCGTCTAGTAATGATCTTTACTAATGAAGCACAA
CTGCGAACAAGACTTAAAAAAAAGGGGCGGAGGGGGAAGATTGGAAATAT
GCTCTTCAAAATCAATCCGTAAAACTCTCCGAATCCCTCGTGTCGACCGG
GCGAAAAATTGCCACGGCAGTGCGCGTTCCTGTTCATGGCCTATCGACGT
CCCCTCGTCACCACCTTGCCTCTTTCAAAACGGCACGATGCGGCCTCCGC
TTTGGAAGTATTTTTTCTTTGATGATGCCTGGGCGGGCAGGGGCCAACAT
TCGGCAGAGGGTCAAGGGCCTTACTCATGTGCTCCTATCTCTCTCCCAAC
GTCCGACCTACATCTCTGGAAGGGATTTTGCTACAGTCGAGAGACGCCAG
GCTTCCAGTTCGACTGTTTTGCCAGACACGCTTGCGCCTTCTTTCTCGAT
AAATTTATGGGGCATTTGTTCTTTAGGTACACGTACGTAAATAGGACCAT
TTTTTCCCCCTTTTGTTTTCTCAGGAAAGCCTCGTGGTTCCGCTGATGAA
GATCCCTGTCAGGAAATTGAACGCCCTGGGTCAGGACTCGCGCCTGCACG
TTGAAATACGCAGGTTAGCGGCGCGTTGCGTTGGGGTGCGCATGCAAGAT
TTCATGGCTTCTTCGACAAGGGACTAGTCTTCTCGGGTTTCCTATTGTGT
GCAGGCGTAGTGTAGTAGAGCGGTGGTGCGCCAGCCTGTCGAGAGACATG
AAATGTTGTTTGGTTGGTTGGTTGTAAACGTTCGTGACACCAAGTTTATT
TTTCTTTTAAAAACATATGAACCTCATTCAAACCCTCTTTTCGAACTTAG
ATAAATGTTTATGGGTAGAGTCTTAGTGGTTTGTGTTTTTTTTTGCGTTT
TATGTTTTGTGTTTTCTTCCCTCCGTTTTCCCCCCTTTTTTCAGCGAACC
ACAAAAAGTCGAGTTGATATTACAGTAGGTCATTTGACATAATATTCGAA
AAACTTTCACAAAATATATCACAGACTTCCTCGGCGAAGGGGTATGTTTT
GTACTCTATTTTATAGTTCTCCCAACGAAAGGGCATTTATTACAAAAGCA
TAGCATGCTCTCAGCGGTTATTTTTTCGCGTGGTGCCTTTCACTTCCCCC
CCCCCCCCCCCCCCCGCCCCTTCCTCTCCCTTCTCGCGGGCGGTGCCTGC
TCCNNNNNNNNNNTCTCAACGGAAAGAGCTGCTGTGTGTTTTTTTTTTTT
CTTTGCGGTCTCCCGCCCCCCCCCCCCCCCCCTCTGATCCTTTTCCTTTC
CCGGTGGTTGCGGCCTCGAACGCCATGGACATAGGCTGTGCCCCCCGAAC
GATAAACCCCCTTACATCTGCATCATCATCGCGCCCTCGAGCCGCTACAT
CTTCCACTCGTTCCCGCTCGAGGAGACCAAGGCGGCCGAGGCCTTCGAAC
ACGTGCTGGAGGGCATCGTGATGGCCGTGGTGACGGAGGGTATGGGCATG
ATCGACGAGATCTCGCGCATCCGGCCGGCGCAGTTGACCACGACAGACCC
TCTGCTGGTGAATTTCCTGTCGCCTTTGCTCCAGGGTACCAGGGTTTCCG
TCGCGGCGTCTTCGAACAAGGTCGTGAACGCGGACTCGGACGCAAAGACC
AAGGAGTCGCCCCTTATCGCTATCATGGACGGCGTTTTCGCTGACTTTAA
CAAGTGAGAAGAAACACTCTTTTTAGGATGGTGGGGGGGAGTGGAGCGAT
CGACCAGAGGAGAGCTCCTTGTTTTGTTTTGTTTTTTGAGGGAGGGAGGG
AGGGTTTTCAGGAGACCTGGGCGGGGAAACTCCATCGCCGATATGCTTTT
ACGTGTCTAGAATTTATTATTCGATTGCTTCCGCGGGCCGTGAACCGCGC
ATTCCCCGACTTTAACCAATAAACGCCACGTAAGTCAAACAGTGACCTAA
TGAGGGCACCAACCACATTGCAACGCTTGAAAAAGGAAAAATATATATGT
GTGCTTGTTGTCCGCGCCGTTCCGATTTGGCGGTTGACCCATTTGCCATG
GGGTATGCGGCACACATAAGTGGTAATAGTAGCAGTCGGTATACACTACT
TGTATATAGAGTATATACAGTCAGCGCGTGAAACTGCAAGCGCTCGAACT
CATTCAAACCCTCCGGACATCGTTTTGCTTGGTTTTATTGTTTCGTGTCT
TTGTCGTATTCGTTGCCTTTTTCGTTCATTGCCTTGTTTTTAATGTTGAG
GGAATGAATGGATTAGTCTAATGGTGGGAAAAGTGTGGCCTTTATACCGC
GCTTCCTCTTTTCTTCTAATTCTCCCCCCATCCCCTCTCATCCCCCCTCC
GTGGTGGATGCCTTCCGATCTCGTTTGATCCCATCCCATGTGATCTCATC
CGGCGTGCCAGGGAAATAAAAAAAGCAAATTCTAAGCGCAAGCTTCCGAT
CGGCGATACCATGGCGGAGGAGGCCAAATGGAAGGTAACTAACTACACTA
GAGTACGGTATTTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig61317:264..3230+

>mRNA_H-elongata_contig61317.13682.1 ID=mRNA_H-elongata_contig61317.13682.1|Name=mRNA_H-elongata_contig61317.13682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig61317:264..3230+ (Himanthalia elongata Himel1 dioecious)
ATGCGATCCGACGCGGCGTCTCCGCTCCAGGCGGACCTCGAGAGAGCGGC
AAAGAGCATAAACACCGTGGCGGAGGAGCAAGGGATGCTTGCCACCCTGA
GGGAGGAAGTGGGAGAGGCCTGCAGGTGCCTGAACTCTTTTGGCGAGGGA
GTGCAACAGGCCAACAAGAACTTCCAGGAGGATGAGCAAGAGCTAGAGGG
GCTATCCTACGCCATGCGATCCGACGCGGCGTCTCCGCTCCAGGCGGACC
TCGAGAGAGCGGCAAAGAGCATAAACACCGTGGCGGAGGAGCAAGGGATG
CTTGCCACCCTGAGGGAGGAAGTGGGAGAGGCCTGCAGGTGCCTGAACTC
TTTTGGCGAGGGAGTGCAACAGGCCAACAAGAACTTCCAGGAGGATGAGC
AAGAGCTAGAGGGGCTATCCTACGCCGAAAGCCTCGTGGTTCCGCTGATG
AAGATCCCTGTCAGGAAATTGAACGCCCTGGGTCAGGACTCGCGCCTGCA
CGTTGAAATACGCAGGAAAGCCTCGTGGTTCCGCTGATGAAGATCCCTGT
CAGGAAATTGAACGCCCTGGGTCAGGACTCGCGCCTGCACGTTGAAATAC
GCAGGCTGTGCCCCCCGAACGATAAACCCCCTTACATCTGCATCATCATC
GCGCCCTCGAGCCGCTACATCTTCCACTCGTTCCCGCTCGAGGAGACCAA
GGCGGCCGAGGCCTTCGAACACGTGCTGGAGGGCATCGTGATGGCCGTGG
TGACGGAGGGTATGGGCATGATCGACGAGATCTCGCGCATCCGGCCGGCG
CAGTTGACCACGACAGACCCTCTGCTGGTGAATTTCCTGTCGCCTTTGCT
CCAGGGTACCAGGGTTTCCGTCGCGGCGTCTTCGAACAAGGTCGTGAACG
CGGACTCGGACGCAAAGACCAAGGAGTCGCCCCTTATCGCTATCATGGAC
GGCGTTTTCGCTGACTTTAACAAGCTGTGCCCCCCGAACGATAAACCCCC
TTACATCTGCATCATCATCGCGCCCTCGAGCCGCTACATCTTCCACTCGT
TCCCGCTCGAGGAGACCAAGGCGGCCGAGGCCTTCGAACACGTGCTGGAG
GGCATCGTGATGGCCGTGGTGACGGAGGGTATGGGCATGATCGACGAGAT
CTCGCGCATCCGGCCGGCGCAGTTGACCACGACAGACCCTCTGCTGGTGA
ATTTCCTGTCGCCTTTGCTCCAGGGTACCAGGGTTTCCGTCGCGGCGTCT
TCGAACAAGGTCGTGAACGCGGACTCGGACGCAAAGACCAAGGAGTCGCC
CCTTATCGCTATCATGGACGGCGTTTTCGCTGACTTTAACAAGGAAATAA
AAAAAGCAAATTCTAAGCGCAAGCTTCCGATCGGCGATACCATGGCGGAG
GAGGCCAAATGGAAGGTAACTAACTACACTAGAGTACGGTATTTATAGGG
AAATAAAAAAAGCAAATTCTAAGCGCAAGCTTCCGATCGGCGATACCATG
GCGGAGGAGGCCAAATGGAAGGTAACTAACTACACTAGAGTACGGTATTT
ATAG
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