mRNA_H-elongata_contig61301.13680.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61301.13680.1
Unique NamemRNA_H-elongata_contig61301.13680.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: D7FM04_ECTSI (Similar to voltage-dependent calcium channel T-type alpha 1I subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM04_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.140e-33
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    1 VCGE-YNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEAWIYFVALIIIGNVFLVS 237
            VCG+ Y+CPDGY+CT      LN G+TGY DIWHA+LQ FQVVSLDGWQQVMWHTQD+AGE  WI+FVAL+++GNV LVS
Sbjct:  189 VCGKGYSCPDGYVCTDSGHVALNDGVTGYHDIWHALLQTFQVVSLDGWQQVMWHTQDSAGEGTWIFFVALLVLGNVVLVS 268
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1H227_9BILA (Voltage-dependent calcium channel type A subunit alpha-1 n=2 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1H227_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 8.190e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G IC K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  256 GAYHCPEGTIC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 332
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BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1H1D6_9BILA (Voltage-gated calcium channel subunit alpha Cav2.2 n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V1H1D6_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 8.230e-14
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G IC K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  182 GAYHCPEGTIC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 258
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A835ZJT8_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJT8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.140e-13
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   13 YNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEAWIYFVALIIIGNVFLV 234
            Y CP G+ C +      + G T Y +IW A LQ F+ +SL+GWQ   WHT DA G  AW++++ +I+ GNV LV
Sbjct:  199 YQCPAGFECMR-HGAGPDGGATSYDNIWIASLQVFKALSLEGWQAAAWHTSDAVGAWAWVFYLIVILAGNVLLV 271
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A1Y3EP44_9BILA (Transporter, cation channel family protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EP44_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.880e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  208 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 284
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1BF83_TRISP (Voltage-dependent calcium channel type A subunit alpha-1 n=9 Tax=Trichinella TaxID=6333 RepID=A0A0V1BF83_TRISP)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  228 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 304
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V0TSN8_9BILA (Voltage-dependent calcium channel type A subunit alpha-1 n=32 Tax=Trichinella TaxID=6333 RepID=A0A0V0TSN8_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  228 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 304
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V0WXW2_9BILA (Voltage-dependent calcium channel type A subunit alpha-1 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V0WXW2_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  228 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 304
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A0V1CJN3_TRIBR (Voltage-dependent calcium channel type A subunit alpha-1 n=7 Tax=Trichinella TaxID=6333 RepID=A0A0V1CJN3_TRIBR)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G Y+CP+G  C K      NYGIT + +I  AML  FQ ++++GW  VM++T D+ G+   W+YF+ LII+G+ F+++
Sbjct:  252 GAYHCPEGTTC-KEQWIGPNYGITSFDNIAFAMLTVFQCITMEGWTNVMYYTNDSQGDTFNWLYFIPLIILGSFFMLN 328
[Close]
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Match: A0A3P6SQV0_DIBLA (Ion_trans domain-containing protein (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6SQV0_DIBLA)

HSP 1 Score: 69.7 bits (169), Expect = 5.890e-13
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    7 GEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQVMWHTQDAAGEEA-WIYFVALIIIGNVFLVS 237
            G + CP GYIC    +   NYGIT + +I +AML  FQ ++++GW  +M+ T DA G+    +YFV LI++G+ F+++
Sbjct:   35 GAFRCPPGYICKGYWEGP-NYGITSFDNIGYAMLTVFQCITMEGWTDIMYTTDDAIGDRFNALYFVPLIVLGSFFMLN 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61301.13680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM04_ECTSI2.140e-3371.25Similar to voltage-dependent calcium channel T-typ... [more]
A0A0V1H227_9BILA8.190e-1443.59Voltage-dependent calcium channel type A subunit a... [more]
A0A0V1H1D6_9BILA8.230e-1443.59Voltage-gated calcium channel subunit alpha Cav2.2... [more]
A0A835ZJT8_9STRA1.140e-1344.59Ion transport protein-domain-containing protein n=... [more]
A0A1Y3EP44_9BILA1.880e-1342.31Transporter, cation channel family protein n=1 Tax... [more]
A0A0V1BF83_TRISP3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A0V0TSN8_9BILA3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A0V0WXW2_9BILA3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A0V1CJN3_TRIBR3.940e-1342.31Voltage-dependent calcium channel type A subunit a... [more]
A0A3P6SQV0_DIBLA5.890e-1341.03Ion_trans domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61301contigH-elongata_contig61301:2763..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.9e-28
Seed eggNOG ortholog2880.D7FM04
KEGG koko:K04851
KEGG TC1.A.1.11.1,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.1696196-CDS-H-elongata_contig61301:2762..28731622930989.1696196-CDS-H-elongata_contig61301:2762..2873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61301 2763..2873 +
1691679652.6030526-CDS-H-elongata_contig61301:2762..28731691679652.6030526-CDS-H-elongata_contig61301:2762..2873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61301 2763..2873 +
1622930989.1948857-CDS-H-elongata_contig61301:3155..33141622930989.1948857-CDS-H-elongata_contig61301:3155..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61301 3156..3314 +
1691679652.6126666-CDS-H-elongata_contig61301:3155..33141691679652.6126666-CDS-H-elongata_contig61301:3155..3314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61301 3156..3314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61301.13680.1prot_H-elongata_contig61301.13680.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61301 2763..3314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61301.13680.1

>prot_H-elongata_contig61301.13680.1 ID=prot_H-elongata_contig61301.13680.1|Name=mRNA_H-elongata_contig61301.13680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
VCGEYNCPDGYICTKVDDFLLNYGITGYQDIWHAMLQAFQVVSLDGWQQV
MWHTQDAAGEEAWIYFVALIIIGNVFLVSVRSDFLVHRF*
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mRNA from alignment at H-elongata_contig61301:2763..3314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61301.13680.1 ID=mRNA_H-elongata_contig61301.13680.1|Name=mRNA_H-elongata_contig61301.13680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at H-elongata_contig61301:2763..3314+ (Himanthalia elongata Himel1 dioecious)
GTCTGTGGTGAATACAATTGTCCCGACGGGTACATCTGCACTAAGGTGGA
TGACTTCTTACTGAACTACGGGATCACGGGCTACCAAGATATTTGGCACG
CCATGTTGCAGGTGACGCAAGATATTTGGCACGCTTGCCAGGCCTGCAGA
AAATCGTGCCTCAAGTTTAAATCCAGAAAAATATACTGTACTTCATATAT
TTTTAAAATAAAATACGGTATAGGGAGGTGGAAGGAGGGCCCTTTCCCGC
CCTCGGTGGGTGGCAGTACATAACATGCATAATATATCTTCAAGACCAAA
CAAGCGATAGTCATAGTGTACAACAGAATAAGACGCAGTATGTCCATCGA
TTTTCTTGCCGTTTTTGCGGCGTCCTGTTTTTAATTGATATAGGCGTTCC
AGGTCGTTTCACTCGACGGCTGGCAGCAAGTGATGTGGCACACCCAAGAC
GCGGCGGGCGAGGAAGCGTGGATCTACTTCGTGGCCCTCATCATTATTGG
CAACGTTTTTCTCGTCTCCGTGAGATCCGATTTCCTCGTGCATCGGTTCT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig61301:2763..3314+

>mRNA_H-elongata_contig61301.13680.1 ID=mRNA_H-elongata_contig61301.13680.1|Name=mRNA_H-elongata_contig61301.13680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig61301:2763..3314+ (Himanthalia elongata Himel1 dioecious)
GTCTGTGGTGAATACAATTGTCCCGACGGGTACATCTGCACTAAGGTGGA
TGACTTCTTACTGAACTACGGGATCACGGGCTACCAAGATATTTGGCACG
CCATGTTGCAGGTCTGTGGTGAATACAATTGTCCCGACGGGTACATCTGC
ACTAAGGTGGATGACTTCTTACTGAACTACGGGATCACGGGCTACCAAGA
TATTTGGCACGCCATGTTGCAGGCGTTCCAGGTCGTTTCACTCGACGGCT
GGCAGCAAGTGATGTGGCACACCCAAGACGCGGCGGGCGAGGAAGCGTGG
ATCTACTTCGTGGCCCTCATCATTATTGGCAACGTTTTTCTCGTCTCCGT
GAGATCCGATTTCCTCGTGCATCGGTTCTGAGCGTTCCAGGTCGTTTCAC
TCGACGGCTGGCAGCAAGTGATGTGGCACACCCAAGACGCGGCGGGCGAG
GAAGCGTGGATCTACTTCGTGGCCCTCATCATTATTGGCAACGTTTTTCT
CGTCTCCGTGAGATCCGATTTCCTCGTGCATCGGTTCTGA
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