mRNA_H-elongata_contig61296.13679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61296.13679.1
Unique NamemRNA_H-elongata_contig61296.13679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61296.13679.1 vs. uniprot
Match: D7FPG7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG7_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 5.000e-98
Identity = 153/201 (76.12%), Postives = 169/201 (84.08%), Query Frame = 1 
Query:    1 DAYWLEYGHHWVMRYTAASDVRVVLLGLLTLISFFVYGVQQTRYTTAVQYLRKAAEKNIGPKQGGNAATMQLRREAEALLAQRKGEQL--KKDGVDPKGSKA-KQSRKEKEAELAEVIAELALQVDIKGSCRKPTWDDQPVVILAMLPYYTATYLWHKAQLLKAALLKREVNEAERAYWACRKVGKNTWEGLDDEARCVLS 594
            DAYWLEYGHHWVMRY +ASDVR VLLGLL L+SFF YG+Q TRYTTAV+YLRKAAEKN+GPK GGNAATMQLRREAEALLA+RKGE    KK+GV  KGSK  KQSRKEKEAELAEVIAEL+LQV+IKGSCRKPTW DQPVV+LAMLP +TATYLWHK QL+ + L KREV  +ER YWA R VG +TW+ LD E R   S
Sbjct:  112 DAYWLEYGHHWVMRYASASDVRGVLLGLLVLVSFFAYGIQHTRYTTAVRYLRKAAEKNLGPKSGGNAATMQLRREAEALLAERKGEAQGGKKNGVGSKGSKVVKQSRKEKEAELAEVIAELSLQVEIKGSCRKPTWRDQPVVLLAMLPVHTATYLWHKFQLVTSKLTKREVTASEREYWARRSVGSSTWDDLDAETRATAS 312
[Close]
BLAST of mRNA_H-elongata_contig61296.13679.1 vs. uniprot
Match: A0A482UVG0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UVG0_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 7.620e-6
Identity = 27/72 (37.50%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:   22 GHHWVMRYTAASDVRVVLLGLLTLISFFVYGVQQTRYTTAVQYLRKAAEKNIGPKQGGNAATMQLRREAEAL 237
            G H+  R    SDVRV++L ++ L+S+F + VQ ++Y  AV+ +++A E N+  K GG   T++L R A  +
Sbjct:   17 GQHYY-RNLPKSDVRVIILVVVALLSWFFHSVQYSKYQRAVKLIKRATENNLSLKNGGTKQTIELYRRASEM 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61296.13679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPG7_ECTSI5.000e-9876.12Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A482UVG0_9ARCH7.620e-637.50Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61296contigH-elongata_contig61296:274..1877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue1.8e-78
Seed eggNOG ortholog2880.D7FPG7
KEGG koko:K09515,ko:K19371
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.DnaJ molecular chaperone homology domain
EggNOG OGsCOG0484@1,KOG0722@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-14_004870.1
Exons4
Model size594
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61296.13679.1prot_H-elongata_contig61296.13679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61296 274..1877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.0687714-CDS-H-elongata_contig61296:273..4181622930989.0687714-CDS-H-elongata_contig61296:273..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 274..418 -
1691679652.5589445-CDS-H-elongata_contig61296:273..4181691679652.5589445-CDS-H-elongata_contig61296:273..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 274..418 -
1622930989.0882301-CDS-H-elongata_contig61296:599..7591622930989.0882301-CDS-H-elongata_contig61296:599..759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 600..759 -
1691679652.5708873-CDS-H-elongata_contig61296:599..7591691679652.5708873-CDS-H-elongata_contig61296:599..759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 600..759 -
1622930989.109231-CDS-H-elongata_contig61296:915..10001622930989.109231-CDS-H-elongata_contig61296:915..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 916..1000 -
1691679652.5802386-CDS-H-elongata_contig61296:915..10001691679652.5802386-CDS-H-elongata_contig61296:915..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 916..1000 -
1622930989.1249785-CDS-H-elongata_contig61296:1673..18771622930989.1249785-CDS-H-elongata_contig61296:1673..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 1674..1877 -
1691679652.590717-CDS-H-elongata_contig61296:1673..18771691679652.590717-CDS-H-elongata_contig61296:1673..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61296 1674..1877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61296.13679.1

>prot_H-elongata_contig61296.13679.1 ID=prot_H-elongata_contig61296.13679.1|Name=mRNA_H-elongata_contig61296.13679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
DAYWLEYGHHWVMRYTAASDVRVVLLGLLTLISFFVYGVQQTRYTTAVQY
LRKAAEKNIGPKQGGNAATMQLRREAEALLAQRKGEQLKKDGVDPKGSKA
KQSRKEKEAELAEVIAELALQVDIKGSCRKPTWDDQPVVILAMLPYYTAT
YLWHKAQLLKAALLKREVNEAERAYWACRKVGKNTWEGLDDEARCVLS
back to top

mRNA from alignment at H-elongata_contig61296:274..1877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61296.13679.1 ID=mRNA_H-elongata_contig61296.13679.1|Name=mRNA_H-elongata_contig61296.13679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1604bp|location=Sequence derived from alignment at H-elongata_contig61296:274..1877- (Himanthalia elongata Himel1 dioecious)
GACGCCTACTGGCTGGAGTACGGCCATCACTGGGTGATGCGCTACACCGC
GGCGTCGGACGTGCGCGTTGTTCTCCTAGGCCTGCTGACCCTTATTTCTT
TCTTTGTCTATGGCGTACAGCAAACGCGGTACACCACAGCCGTGCAGTAT
CTGCGCAAGGCAGCGGAGAAGAACATAGGGCCAAAACAGGGAGGCAATGC
AGCGGTAAGGGGTAGAATGATGTGGTCGCAGTCTGTCGGGGAGGGGAGGG
GCGAGATGGCGGGTTGAGGAGCTCCCAACAAATAGACGTGTGTGTGTTGT
TGTTGTTGTTGGTCTCAGAAGATCAACCGGGTTTGGTTGCCTTCTGCTCG
TGATCAGCTGAACAGGTCCCCGTTCGCGCCTGAGAAATTGGTCTCGCGAG
AGACGGGTTCAGCATTCCTGTCCCGCGTCAGCCCGTTCTCTCAGCCCAGG
CTGAATCTGGTGCTTACTCCCGGGATACTCTCANNNNNNNNNNCGGCGTC
CATCTCTACCGTCAACCGCCATCGGGTCAATCCCGATTTCATCAGGCCAC
GTGTGTGTGGTCATCATATATAGCAGTATACATTATAGTATAGTAGTATA
GTATGGATCGATCGGATATGGTTGCTAATCGTGCTCGTGGTCAACTGAAC
ATGGAAAATTAATGGTCTCCTGTCTCTATTTGTACCTGAGGATTTGGTGC
GAAGGCTAATATCAAAACAACTATTAATACATTTTTAGTGTGGTGCCCGC
GCGCGGCTTCGGCAAGTCTCCTCCTTTTATTGTGTATTTTGGGTATTATG
TGTATTATGTGTGTTTACATGCATGTCTTTTGTATAATTTTCGGTCTGTA
TCTTTCTCTTGATATGTTTCTCGGCAGACGATGCAGCTGCGGAGAGAAGC
GGAGGCATTACTGGCTCAGCGTAAGGGAGAGCAGCTAAAGAAAGACGGCG
TGGACCCTAAGGGTAAGGACGAGATCCATCCTTACGATCTTGGATCGTTG
TGCCGCGTCACACTCGGCCATTCATCCCCCCTTCGTTCCAATTCCCGATA
GAGTTGGAGGTTCGCTTGGATTGGTCCGCACGGTCAAGACGCTGTTTTAA
TTCCCGTATCGACAACAGGTAGCAAGGCTAAGCAAAGCCGCAAGGAGAAG
GAGGCCGAGCTAGCGGAGGTCATCGCTGAGCTGGCGCTACAGGTTGACAT
CAAGGGAAGCTGTCGCAAGCCCACCTGGGATGATCAGCCGGTCGTCATCC
TCGCCATGCTACCCTACTACACTGCCACGTGAGATAAAGGAACTCCTTGA
AACGAGAACTCTCAACCCTGTTGGTAAATATATTGGAATTGAATGCATCC
CTCCCACCGTTTTCCTGTTGTCAGTCAGAGGGTGGTTCTTCAAGAAGATA
GCCCCTCACTGCACGCTCGAGTCACATATGTCTCCGCGATGGCGCTTCGA
TGGGTACAGGTACCTATGGCACAAGGCTCAACTGCTGAAGGCAGCCCTCT
TGAAGCGAGAGGTCAACGAAGCCGAGCGCGCGTATTGGGCCTGCAGGAAG
GTCGGAAAGAACACCTGGGAAGGCCTTGACGATGAAGCTAGGTGCGTTCT
CTCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61296:274..1877-

>mRNA_H-elongata_contig61296.13679.1 ID=mRNA_H-elongata_contig61296.13679.1|Name=mRNA_H-elongata_contig61296.13679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig61296:274..1877- (Himanthalia elongata Himel1 dioecious)
GACGCCTACTGGCTGGAGTACGGCCATCACTGGGTGATGCGCTACACCGC
GGCGTCGGACGTGCGCGTTGTTCTCCTAGGCCTGCTGACCCTTATTTCTT
TCTTTGTCTATGGCGTACAGCAAACGCGGTACACCACAGCCGTGCAGTAT
CTGCGCAAGGCAGCGGAGAAGAACATAGGGCCAAAACAGGGAGGCAATGC
AGCGGACGCCTACTGGCTGGAGTACGGCCATCACTGGGTGATGCGCTACA
CCGCGGCGTCGGACGTGCGCGTTGTTCTCCTAGGCCTGCTGACCCTTATT
TCTTTCTTTGTCTATGGCGTACAGCAAACGCGGTACACCACAGCCGTGCA
GTATCTGCGCAAGGCAGCGGAGAAGAACATAGGGCCAAAACAGGGAGGCA
ATGCAGCGACGATGCAGCTGCGGAGAGAAGCGGAGGCATTACTGGCTCAG
CGTAAGGGAGAGCAGCTAAAGAAAGACGGCGTGGACCCTAAGGACGATGC
AGCTGCGGAGAGAAGCGGAGGCATTACTGGCTCAGCGTAAGGGAGAGCAG
CTAAAGAAAGACGGCGTGGACCCTAAGGGTAGCAAGGCTAAGCAAAGCCG
CAAGGAGAAGGAGGCCGAGCTAGCGGAGGTCATCGCTGAGCTGGCGCTAC
AGGTTGACATCAAGGGAAGCTGTCGCAAGCCCACCTGGGATGATCAGCCG
GTCGTCATCCTCGCCATGCTACCCTACTACACTGCCACGTAGCAAGGCTA
AGCAAAGCCGCAAGGAGAAGGAGGCCGAGCTAGCGGAGGTCATCGCTGAG
CTGGCGCTACAGGTTGACATCAAGGGAAGCTGTCGCAAGCCCACCTGGGA
TGATCAGCCGGTCGTCATCCTCGCCATGCTACCCTACTACACTGCCACGT
ACCTATGGCACAAGGCTCAACTGCTGAAGGCAGCCCTCTTGAAGCGAGAG
GTCAACGAAGCCGAGCGCGCGTATTGGGCCTGCAGGAAGGTCGGAAAGAA
CACCTGGGAAGGCCTTGACGATGAAGCTAGGTGCGTTCTCTCCGTACCTA
TGGCACAAGGCTCAACTGCTGAAGGCAGCCCTCTTGAAGCGAGAGGTCAA
CGAAGCCGAGCGCGCGTATTGGGCCTGCAGGAAGGTCGGAAAGAACACCT
GGGAAGGCCTTGACGATGAAGCTAGGTGCGTTCTCTCC
back to top