mRNA_H-elongata_contig61292.13678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61292.13678.1
Unique NamemRNA_H-elongata_contig61292.13678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: A0A6H5JRU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRU7_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.430e-46
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRRDQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            LV IKSFKTGSTTLATYIAQ+GHQ  +YFLHP++TGWF +GELESRRD+G++FDISLRHVTPYTPY VLE LVP A F TIMR P ERF+SLFNF
Sbjct:   93 LVLIKSFKTGSTTLATYIAQVGHQRRSYFLHPKATGWFGRGELESRRDEGQSFDISLRHVTPYTPYDVLEELVPGAAFVTIMRRPAERFLSLFNF 187
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: A0A8J2WZM9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZM9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.390e-24
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRRDQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            +VF+K++KTGSTT++ ++AQIG++ G + LHP  +G F  GEL+ R D+GE FD+S RH TP      L  LVP A + TIMR+PV RF+S   F
Sbjct:   82 VVFVKTYKTGSTTVSEFLAQIGYERGLHALHPSESGHFKAGELKRRADRGERFDLSFRHPTPTLDVLSLGRLVPNARWCTIMREPVSRFVSTMRF 176
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: A0A7S2STP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STP4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.710e-21
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRRDQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPV 258
            LVFIK++K+GSTT+A ++  + +Q     LHP + GWF  GEL  R   GE +D+S RH+TP+  Y  L  L+P A + +I+R+PV
Sbjct:   52 LVFIKTYKSGSTTVAKFLNAVAYQKELTMLHPLAQGWFQNGELVRRGKAGERYDMSFRHITPHVDYPALGVLLPNAHYVSILREPV 137
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: F0Y4E6_AURAN (USP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4E6_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 2.140e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRRDQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            +VF+K++KTGSTT++ ++A +G+  G + LHPR  G F  GEL  R   GE + +S RH TP    + L ALVP A + TIMR+PV RF+S   F
Sbjct: 3732 VVFVKTYKTGSTTVSEFLAAVGYDLGLHALHPRDGGNFRAGELARRGAAGERYHLSYRHPTPRLDVASLGALVPDAYWCTIMREPVSRFVSTMLF 3826
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: UPI0001CBC351 (galactosylceramide sulfotransferase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBC351)

HSP 1 Score: 59.3 bits (142), Expect = 2.970e-8
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRR-----DQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            LV+IK+ KTGSTTLA+ + + G+        P     F +  L +RR     D   +FD+   H     P   L+AL+P A + TI+R P+ +F S+F F
Sbjct:   22 LVYIKTHKTGSTTLASILERFGYTRNLTMAVPEIRHGFPRTGLFNRRMVWKIDNISSFDMLTNHARYNRPE--LDALIPNATYITILRHPLAQFESMFGF 119
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: A0A3B3BML0_ORYME (Uncharacterized protein n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BML0_ORYME)

HSP 1 Score: 59.3 bits (142), Expect = 3.220e-8
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRRDQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            +VF+K+ KTGS+T+   + ++G  +GA F  P  T  F    ++   +    FDI   H+   T   + + + P  V+ TI+RDPV+ F S+F++
Sbjct:   47 VVFLKTHKTGSSTVQNLLFRMGEMHGATFAFPSYTYQFEADLVDELPEGSSQFDILCSHMRLNTE-ELKKVMPPNTVYVTILRDPVQTFESVFSY 140
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: UPI0001CBBAA8 (uncharacterized protein LOC100373995 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBBAA8)

HSP 1 Score: 59.3 bits (142), Expect = 3.440e-8
Identity = 34/101 (33.66%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRR------DQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            L++IK+ KTGSTTLA+ I + G+        P+    F+K     +R      D+G  FD+   H     P   L++++P A + TI+R PV++F S F++
Sbjct:   89 LIYIKTHKTGSTTLASIIERYGYTRNLTMAIPKGNHIFSKTSQPFQRSMVAEIDEGTHFDMLTNHARYNRPE--LDSVIPNATYITILRHPVKQFESSFSY 187
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: UPI0003F0817C (galactosylceramide sulfotransferase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0817C)

HSP 1 Score: 57.8 bits (138), Expect = 7.010e-8
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRR-----DQGETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF 285
            LV+IK+ KTGSTTLA+ + + G+        P     F +  L +R      D   +FD+   H     P   L+AL+P A + TI+R P+ +F S+F F
Sbjct:   22 LVYIKTHKTGSTTLASILERFGYTGNLTMAVPEIRHGFPRTNLFNRSMVWKIDNISSFDMLTNHARYNRPE--LDALIPNATYITILRHPLAQFESMFGF 119
[Close]
BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: UPI0001CBB118 (galactosylceramide sulfotransferase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB118)

HSP 1 Score: 57.0 bits (136), Expect = 2.100e-7
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRST-GWFAKGELESRRDQGETFDISLRHVTPYTPYSVL-----------EALVPRAVFATIMRDPVERFMSLFNF 285
            +VF+K++KT STT+ + + + G  +   FL P S   WF++ E  +R       D+ +    P T YS+L           E L+P A + TI+R+PV  + S+F F
Sbjct:   39 IVFLKTYKTASTTITSILERYGLSHNLSFLLPASGHAWFSRTERFNR-------DMPILPPMPNTSYSMLVGHVPFKKDALEELIPNATYVTIIREPVATYESIFGF 138
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BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Match: A0A1S3F0K6_DIPOR (galactosylceramide sulfotransferase isoform X1 n=6 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3F0K6_DIPOR)

HSP 1 Score: 57.0 bits (136), Expect = 2.150e-7
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:    1 LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRST------GWFAKGELESRRDQGETFDISLRHVTPYTPYSVLEALVPR-AVFATIMRDPVERFMSLFNF 285
            +VF+K+ KTGS+TL   + + G ++G  F  P+        GWFA+ +L      G  F+I   H+     Y  + ALVP  A F T++RDP   F S F++
Sbjct:   98 IVFLKTHKTGSSTLLNILFRFGEKHGLRFAFPKGRNDFGYPGWFAR-DLVRGYKPGACFNIIANHMR--FQYDEVRALVPPDATFITVLRDPARLFESSFHY 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61292.13678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRU7_9PHAE1.430e-4678.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2WZM9_9STRA5.390e-2450.53Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2STP4_9STRA5.710e-2145.35Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0Y4E6_AURAN2.140e-1947.37USP domain-containing protein n=1 Tax=Aureococcus ... [more]
UPI0001CBC3512.970e-836.00galactosylceramide sulfotransferase-like n=1 Tax=S... [more]
A0A3B3BML0_ORYME3.220e-832.63Uncharacterized protein n=1 Tax=Oryzias melastigma... [more]
UPI0001CBBAA83.440e-833.66uncharacterized protein LOC100373995 n=1 Tax=Sacco... [more]
UPI0003F0817C7.010e-835.00galactosylceramide sulfotransferase-like n=1 Tax=S... [more]
UPI0001CBB1182.100e-732.71galactosylceramide sulfotransferase-like n=1 Tax=S... [more]
A0A1S3F0K6_DIPOR2.150e-735.29galactosylceramide sulfotransferase isoform X1 n=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61292contigH-elongata_contig61292:2311..2857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.5e-16
Seed eggNOG ortholog44056.XP_009034943.1
Preferred nameMETTL16
KEGG rclassRC00003,RC00335
KEGG koko:K06970,ko:K11393,ko:K11840,ko:K11853,ko:K11869,ko:K13119
KEGG ReactionR07232
GOsGO:0000154,GO:0000226,GO:0001510,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008174,GO:0008649,GO:0008757,GO:0008988,GO:0009056,GO:0009057,GO:0009451,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016422,GO:0016433,GO:0016556,GO:0016740,GO:0016741,GO:0017069,GO:0017070,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022613,GO:0030629,GO:0031023,GO:0031167,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035613,GO:0040025,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043484,GO:0043487,GO:0043488,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048569,GO:0048731,GO:0048856,GO:0050684,GO:0050779,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0052907,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070475,GO:0071704,GO:0071840,GO:0080009,GO:0080090,GO:0090304,GO:0097159,GO:0120048,GO:0120049,GO:0140098,GO:0140102,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903311,GO:1903313,GO:2000112,GO:2000113
EggNOG free text desc.23S rRNA (adenine(1618)-N(6))-methyltransferase activity
EggNOG OGsCOG3129@1,COG5077@1,KOG1866@2759,KOG2912@2759
EC2.1.1.181,3.4.19.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-3-O-sulfotransferase
Ec32 orthologEc-11_001430.1
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.994546-CDS-H-elongata_contig61292:2310..23701622930988.994546-CDS-H-elongata_contig61292:2310..2370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61292 2311..2370 +
1691679652.5385444-CDS-H-elongata_contig61292:2310..23701691679652.5385444-CDS-H-elongata_contig61292:2310..2370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61292 2311..2370 +
1622930989.0222578-CDS-H-elongata_contig61292:2632..28571622930989.0222578-CDS-H-elongata_contig61292:2632..2857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61292 2633..2857 +
1691679652.5493963-CDS-H-elongata_contig61292:2632..28571691679652.5493963-CDS-H-elongata_contig61292:2632..2857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61292 2633..2857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61292.13678.1prot_H-elongata_contig61292.13678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61292 2311..2857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61292.13678.1

>prot_H-elongata_contig61292.13678.1 ID=prot_H-elongata_contig61292.13678.1|Name=mRNA_H-elongata_contig61292.13678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
LVFIKSFKTGSTTLATYIAQIGHQNGAYFLHPRSTGWFAKGELESRRDQG
ETFDISLRHVTPYTPYSVLEALVPRAVFATIMRDPVERFMSLFNF
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mRNA from alignment at H-elongata_contig61292:2311..2857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61292.13678.1 ID=mRNA_H-elongata_contig61292.13678.1|Name=mRNA_H-elongata_contig61292.13678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=547bp|location=Sequence derived from alignment at H-elongata_contig61292:2311..2857+ (Himanthalia elongata Himel1 dioecious)
TTGGTATTCATTAAGTCTTTCAAGACCGGAAGCACGACCCTGGCCACCTA
TATCGCGCAGGTGAACCTATGCAATACCGCTAGCCTGTTATACCACCTGG
CAGCTAATAATCGTGGTTTGATTTCAAGATGATTCGTGAAGATTGGTGCT
TGAATCCGCTCCCGACGGCCGGTGCCTTGTGCCTGATTCCTATTGTTCCT
ATTCCTGTTGCAAAGACCGAATATTAAGAACAGTATGTGATCATCACAAA
TAAATGTTTGCCTCCCAATGACCTCTTTCATACATACGCGGTATACATTC
GGCACTGGTGCTTGCTCGAAAGATTGGCCACCAAAACGGAGCGTACTTCC
TGCACCCAAGATCAACGGGTTGGTTCGCGAAGGGAGAGCTCGAGTCACGG
CGAGATCAGGGGGAAACGTTCGATATCAGCCTCCGCCACGTGACGCCTTA
TACCCCCTACAGCGTTCTCGAGGCCCTCGTGCCCAGGGCCGTCTTTGCGA
CGATCATGCGCGACCCGGTAGAGCGATTCATGTCGCTCTTCAACTTC
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Coding sequence (CDS) from alignment at H-elongata_contig61292:2311..2857+

>mRNA_H-elongata_contig61292.13678.1 ID=mRNA_H-elongata_contig61292.13678.1|Name=mRNA_H-elongata_contig61292.13678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig61292:2311..2857+ (Himanthalia elongata Himel1 dioecious)
TTGGTATTCATTAAGTCTTTCAAGACCGGAAGCACGACCCTGGCCACCTA
TATCGCGCAGTTGGTATTCATTAAGTCTTTCAAGACCGGAAGCACGACCC
TGGCCACCTATATCGCGCAGATTGGCCACCAAAACGGAGCGTACTTCCTG
CACCCAAGATCAACGGGTTGGTTCGCGAAGGGAGAGCTCGAGTCACGGCG
AGATCAGGGGGAAACGTTCGATATCAGCCTCCGCCACGTGACGCCTTATA
CCCCCTACAGCGTTCTCGAGGCCCTCGTGCCCAGGGCCGTCTTTGCGACG
ATCATGCGCGACCCGGTAGAGCGATTCATGTCGCTCTTCAACTTCATTGG
CCACCAAAACGGAGCGTACTTCCTGCACCCAAGATCAACGGGTTGGTTCG
CGAAGGGAGAGCTCGAGTCACGGCGAGATCAGGGGGAAACGTTCGATATC
AGCCTCCGCCACGTGACGCCTTATACCCCCTACAGCGTTCTCGAGGCCCT
CGTGCCCAGGGCCGTCTTTGCGACGATCATGCGCGACCCGGTAGAGCGAT
TCATGTCGCTCTTCAACTTC
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